Experiment set2S493 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_AminoAcid20 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
GFF249 -6.5 -4.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF5497 -6.2 -11.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5584 -6.1 -4.2 DNA polymerase I (EC 2.7.7.7) compare
GFF1222 -5.9 -5.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3687 -5.6 -3.8 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF523 -5.1 -3.6 Dihydroorotase (EC 3.5.2.3) compare
GFF245 -4.9 -3.4 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF4211 -4.8 -4.7 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF3695 -4.8 -3.2 FIG003089: Probable transmembrane protein compare
GFF651 -4.7 -4.6 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF3888 -4.7 -3.2 Biopolymer transport protein ExbD/TolR compare
GFF3686 -4.6 -3.2 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF248 -4.6 -3.1 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF4600 -4.5 -8.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF2763 -4.5 -3.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF3692 -4.5 -4.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF770 -4.5 -14.0 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1882 -4.5 -3.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF4893 -4.4 -3.1 Nitrogen regulation protein NR(I) compare
GFF1228 -4.4 -3.0 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3682 -4.3 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF4788 -4.3 -21.5 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF3326 -4.3 -15.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF2574 -4.3 -4.1 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF5561 -4.3 -5.0 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF1916 -4.2 -25.3 Probable transmembrane protein compare
GFF5772 -4.2 -2.8 Phosphomannomutase (EC 5.4.2.8) compare
GFF3684 -3.9 -2.7 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF709 -3.9 -2.7 Cysteine synthase B (EC 2.5.1.47) compare
GFF4523 -3.9 -8.9 FIG000859: hypothetical protein YebC compare
GFF2495 -3.8 -14.4 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF2573 -3.8 -6.4 Peptide deformylase (EC 3.5.1.88) compare
GFF5559 -3.8 -5.7 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF2923 -3.8 -7.1 Cytochrome c-type biogenesis protein ResA compare
GFF5766 -3.7 -4.4 PMID: 11481431 compare
GFF4535 -3.7 -2.5 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF4513 -3.7 -11.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF590 -3.6 -3.5 Sugar kinases, ribokinase family compare
GFF1267 -3.6 -13.0 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF1839 -3.6 -10.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF3438 -3.6 -9.2 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1341 -3.5 -4.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1227 -3.5 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF1764 -3.4 -3.3 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF1011 -3.4 -13.8 Transcriptional regulator, IclR family compare
GFF2894 -3.4 -2.4 Putative translation initiation inhibitor, yjgF family compare
GFF2027 -3.4 -7.2 hypothetical protein compare
GFF1350 -3.4 -2.3 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF1803 -3.4 -2.3 Translation elongation factor G compare
GFF1767 -3.4 -2.3 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF2615 -3.2 -5.7 Ferric uptake regulation protein FUR compare
GFF2936 -3.1 -5.0 Proposed lipoate regulatory protein YbeD compare
GFF1339 -3.1 -7.1 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1864 -3.1 -11.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF4892 -3.1 -15.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1787 -3.1 -9.4 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4962 -3.1 -4.6 Excinuclease ABC subunit B compare
GFF697 -3.0 -10.6 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF775 -3.0 -2.0 Cell division protein FtsK compare
GFF4786 -3.0 -19.0 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF4243 -2.9 -6.1 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF5767 -2.8 -5.3 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF3694 -2.8 -3.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2018 -2.8 -8.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF4042 -2.8 -7.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF4785 -2.7 -16.2 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF2500 -2.7 -9.7 RecA protein compare
GFF5491 -2.6 -3.9 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF3374 -2.6 -5.9 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF693 -2.6 -3.4 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF4229 -2.6 -5.5 Exopolyphosphatase (EC 3.6.1.11) compare
GFF4861 -2.6 -6.2 Mlr7403 protein compare
GFF2726 -2.5 -13.9 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
GFF5228 -2.5 -14.6 Transcriptional regulator, TetR family compare
GFF689 -2.5 -10.3 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF5734 -2.5 -3.8 Ribosome small subunit-stimulated GTPase EngC compare
GFF1862 -2.4 -13.7 Probable glycosyltransferase compare
GFF4889 -2.4 -3.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1354 -2.4 -4.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF5340 -2.4 -3.8 Outer membrane protein A precursor compare
GFF1788 -2.4 -9.3 Probable proline rich signal peptide protein compare
GFF5737 -2.3 -9.8 LSU ribosomal protein L19p compare
GFF2511 -2.3 -5.2 Molybdenum cofactor biosynthesis protein MoaC compare
GFF3690 -2.3 -2.3 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF4731 -2.3 -16.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF5566 -2.3 -2.4 FIG002207: Probable transmembrane protein compare
GFF4534 -2.3 -5.5 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF4293 -2.3 -11.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF3324 -2.2 -14.5 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF5110 -2.2 -8.4 Phytoene synthase (EC 2.5.1.32) compare
GFF676 -2.2 -8.8 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF5509 -2.2 -4.6 Gluconate utilization system Gnt-I transcriptional repressor compare
GFF3933 -2.2 -5.3 membrane protein, putative compare
GFF691 -2.2 -5.0 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF2512 -2.1 -5.8 Exported zinc metalloprotease YfgC precursor compare
GFF5768 -2.1 -8.2 Putative O-antigen biosynthesis protein precursor compare
GFF3940 -2.1 -3.8 Molybdenum cofactor biosynthesis protein MoaE compare
GFF4292 -2.1 -6.4 Oxidoreductase probably involved in sulfite reduction compare
GFF1846 -2.1 -15.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF4944 -2.1 -12.5 transcriptional regulator, TetR family compare
GFF1855 -2.1 -14.4 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF1861 -2.1 -16.7 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF1854 -2.1 -6.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1257 -2.1 -3.0 FAD/FMN-containing dehydrogenases compare
GFF2367 -2.1 -7.2 hypothetical protein compare
GFF3361 -2.1 -7.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3587 -2.0 -4.5 Formiminoglutamase (EC 3.5.3.8) compare
GFF1859 -2.0 -14.2 CgeB family protein compare
GFF1575 -2.0 -4.2 Nudix-related transcriptional regulator NrtR compare
GFF1666 -2.0 -2.9 Holliday junction DNA helicase RuvA compare
GFF1851 -2.0 -15.1 hypothetical protein compare
GFF5742 -2.0 -3.1 Probable transmembrane protein compare
GFF1856 -2.0 -13.9 hypothetical protein compare
GFF1853 -1.9 -10.0 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF1848 -1.9 -11.6 hypothetical protein compare
GFF1845 -1.9 -12.8 O-antigen export system, permease protein compare
GFF2804 -1.9 -8.3 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF3938 -1.9 -5.0 Molybdopterin biosynthesis protein MoeA compare
GFF3360 -1.9 -14.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5759 -1.8 -6.9 Glutaryl-CoA dehydrogenase (EC 1.3.99.7) compare
GFF2485 -1.8 -5.8 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF546 -1.8 -4.2 Protein of unknown function DUF484 compare
GFF589 -1.8 -2.0 Probable transmembrane protein compare
GFF1865 -1.8 -12.6 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF1858 -1.8 -7.8 glycosyl transferase family 2 compare
GFF2479 -1.8 -1.6 ABC-type hemin transport system, ATPase component compare
GFF3880 -1.8 -8.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF2610 -1.7 -9.8 Patatin compare
GFF2123 -1.7 -3.4 Translation initiation factor 1 compare
GFF2036 -1.7 -13.4 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF5731 -1.7 -9.7 3'-to-5' oligoribonuclease (orn) compare
GFF4252 -1.7 -7.2 FIG000557: hypothetical protein co-occurring with RecR compare
GFF688 -1.7 -7.4 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF3363 -1.7 -8.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF5268 -1.7 -5.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF1841 -1.7 -13.1 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF1844 -1.7 -13.6 Aminotransferase compare
GFF2566 -1.7 -12.7 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF1842 -1.7 -13.3 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF4006 -1.7 -8.6 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF652 -1.7 -2.8 Dihydroorotase (EC 3.5.2.3) compare
GFF550 -1.6 -3.3 C4-type zinc finger protein, DksA/TraR family compare
GFF2725 -1.6 -8.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
GFF698 -1.6 -4.0 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF5461 -1.6 -2.3 Tyrosine recombinase XerD compare
GFF1843 -1.6 -12.4 hypothetical protein compare
GFF2931 -1.6 -9.9 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF3355 -1.6 -2.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF222 -1.6 -2.7 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF2323 -1.6 -9.2 Transcriptional regulator, IclR family compare
GFF2347 -1.6 -5.5 tRNA-Pro-CGG compare
GFF5771 -1.6 -7.0 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF1741 -1.5 -12.4 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
GFF2446 -1.5 -3.3 RNA-binding protein compare
GFF1331 -1.5 -9.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF3357 -1.5 -3.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF4101 -1.5 -1.5 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF1204 -1.4 -5.4 Regulatory protein of benzoate catabolism compare
GFF4501 -1.4 -4.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
GFF547 -1.4 -4.1 Tyrosine recombinase XerC compare
GFF695 -1.4 -6.2 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF4290 -1.4 -7.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1194 -1.4 -1.3 Formate dehydrogenase subunit or accessory protein compare
GFF3980 -1.3 -2.3 Vitamin B12 ABC transporter, B12-binding component BtuF compare
GFF1338 -1.3 -7.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
GFF4897 -1.3 -7.3 Transcription elongation factor GreA compare
GFF3838 -1.3 -1.6 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF4264 -1.3 -8.9 Molybdenum cofactor biosynthesis protein MoaA compare
GFF2614 -1.3 -1.8 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF3348 -1.3 -6.7 DNA recombination and repair protein RecO compare
GFF2731 -1.3 -4.2 Two-component system response regulator compare
GFF5577 -1.3 -2.7 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF4289 -1.3 -8.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF5173 -1.3 -1.8 MotA/TolQ/ExbB proton channel family protein compare
GFF630 -1.3 -5.1 GTP-binding and nucleic acid-binding protein YchF compare
GFF4321 -1.3 -7.9 Transcriptional regulator, IclR family compare
GFF1847 -1.2 -10.0 hypothetical protein compare
GFF2897 -1.2 -3.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5143 -1.2 -2.4 TPR repeat precursor compare
GFF1544 -1.2 -3.2 Transcriptional regulatory protein compare
GFF3007 -1.2 -1.6 Polysaccharide deacetylase compare
GFF114 -1.2 -6.5 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
GFF3354 -1.2 -6.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3817 -1.2 -1.5 hypothetical protein compare
GFF2559 -1.2 -8.5 hypothetical protein compare
GFF1973 -1.2 -9.2 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
GFF1250 -1.2 -3.1 Transporter compare
GFF1914 -1.2 -8.0 FIG00931613: hypothetical protein compare
GFF2443 -1.2 -4.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
GFF1630 -1.2 -3.8 FolM Alternative dihydrofolate reductase 1 compare
GFF3343 -1.2 -9.7 Translation elongation factor LepA compare
GFF1716 -1.2 -5.4 Transcriptional regulator, AraC family compare
GFF466 -1.1 -1.1 Isochorismatase (EC 3.3.2.1) compare
GFF3530 -1.1 -4.1 ATP-dependent RNA helicase RhlE compare
GFF301 -1.1 -2.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF724 -1.1 -5.0 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF696 -1.1 -5.6 Probable transmembrane protein compare
GFF4856 -1.1 -6.2 HflK protein compare
GFF5202 -1.1 -2.1 Bll3817 protein compare
GFF4253 -1.1 -6.4 Recombination protein RecR compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_AminoAcid20 across organisms