Experiment set2S493 for Bacteroides stercoris CC31F

Compare to:

MRS 1 x carbon source complex media

200 most important genes:

  gene name fitness t score description  
HMPREF1181_RS03405 -8.6 -7.4 SRPBCC family protein compare
HMPREF1181_RS02680 -6.2 -12.7 magnesium transporter CorA family protein compare
HMPREF1181_RS02505 -4.7 -16.2 UDP-galactopyranose mutase compare
HMPREF1181_RS02460 -4.3 -9.2 glycosyltransferase family 2 protein compare
HMPREF1181_RS08265 -4.2 -5.7 (d)CMP kinase compare
HMPREF1181_RS15095 -4.1 -12.5 UDP-glucose 4-epimerase GalE compare
HMPREF1181_RS01615 -4.1 -7.3 polysaccharide deacetylase family protein compare
HMPREF1181_RS06865 -4.0 -2.8 branched-chain amino acid aminotransferase compare
HMPREF1181_RS03235 -3.8 -5.8 elongation factor P compare
HMPREF1181_RS04935 -3.5 -20.5 transporter substrate-binding domain-containing protein compare
HMPREF1181_RS15490 -3.5 -7.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1181_RS16965 -3.3 -14.4 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1181_RS04525 -3.3 -13.9 transporter substrate-binding domain-containing protein compare
HMPREF1181_RS02450 -3.2 -1.9 hypothetical protein compare
HMPREF1181_RS08115 -3.2 -6.9 DUF5056 domain-containing protein compare
HMPREF1181_RS04810 -3.2 -3.3 phosphatidylglycerophosphatase A compare
HMPREF1181_RS06930 -3.1 -2.1 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1181_RS15485 -3.1 -11.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1181_RS08230 -3.1 -8.7 hypothetical protein compare
HMPREF1181_RS00190 -3.1 -2.1 translocation/assembly module TamB domain-containing protein compare
HMPREF1181_RS12535 -3.0 -9.5 GDP-L-fucose synthase compare
HMPREF1181_RS14790 -2.9 -16.7 alpha amylase C-terminal domain-containing protein compare
HMPREF1181_RS05610 -2.9 -11.7 response regulator compare
HMPREF1181_RS00185 -2.8 -2.7 BamA/TamA family outer membrane protein compare
HMPREF1181_RS14355 -2.6 -9.4 redoxin domain-containing protein compare
HMPREF1181_RS04795 -2.6 -13.2 inositol phosphorylceramide synthase compare
HMPREF1181_RS05800 -2.6 -7.3 hypothetical protein compare
HMPREF1181_RS08795 -2.6 -14.5 hypothetical protein compare
HMPREF1181_RS16620 -2.6 -5.6 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1181_RS12530 -2.5 -8.0 GDP-mannose 4,6-dehydratase compare
HMPREF1181_RS14835 -2.5 -10.7 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1181_RS06100 -2.4 -11.1 DUF4270 domain-containing protein compare
HMPREF1181_RS04800 -2.4 -9.9 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1181_RS01135 -2.3 -3.3 tRNA-Arg compare
HMPREF1181_RS01180 -2.2 -14.1 translational GTPase TypA compare
HMPREF1181_RS07010 -2.2 -8.1 adenylosuccinate lyase compare
HMPREF1181_RS06655 -2.2 -2.6 malate dehydrogenase compare
HMPREF1181_RS03270 -2.2 -9.5 DeoR/GlpR transcriptional regulator compare
HMPREF1181_RS03560 -2.1 -6.2 tRNA-Pro compare
HMPREF1181_RS07480 -2.1 -10.1 ABC transporter ATP-binding protein compare
HMPREF1181_RS01240 -2.1 -2.7 pyruvate kinase compare
HMPREF1181_RS00235 -2.1 -10.7 TetR/AcrR family transcriptional regulator compare
HMPREF1181_RS07410 -2.0 -5.7 hypothetical protein compare
HMPREF1181_RS18085 -2.0 -14.0 hypothetical protein compare
HMPREF1181_RS05665 -2.0 -6.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1181_RS07720 -2.0 -2.3 RteC domain-containing protein compare
HMPREF1181_RS05780 -2.0 -4.6 SurA N-terminal domain-containing protein compare
HMPREF1181_RS01535 -2.0 -3.2 phosphatase PAP2 family protein compare
HMPREF1181_RS05125 -1.9 -4.2 terminase compare
HMPREF1181_RS09330 -1.9 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1181_RS14175 -1.9 -7.3 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1181_RS06315 -1.9 -4.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1181_RS08650 -1.9 -10.8 MCE family protein compare
HMPREF1181_RS07475 -1.8 -8.7 ABC transporter permease compare
HMPREF1181_RS14235 -1.8 -4.3 carbon-nitrogen hydrolase compare
HMPREF1181_RS09235 -1.8 -10.5 hypothetical protein compare
HMPREF1181_RS02000 -1.8 -2.4 redox-regulated ATPase YchF compare
HMPREF1181_RS05470 -1.8 -2.5 HAD-IIIA family hydrolase compare
HMPREF1181_RS01095 -1.8 -11.7 type I DNA topoisomerase compare
HMPREF1181_RS05875 -1.8 -2.8 30S ribosomal protein S1 compare
HMPREF1181_RS01325 -1.8 -11.3 glycosyltransferase compare
HMPREF1181_RS14245 -1.7 -4.9 agmatine deiminase family protein compare
HMPREF1181_RS03400 -1.7 -3.1 orotate phosphoribosyltransferase compare
HMPREF1181_RS04805 -1.6 -5.6 GtrA family protein compare
HMPREF1181_RS01550 -1.6 -2.1 ribonuclease R compare
HMPREF1181_RS06320 -1.6 -2.2 shikimate dehydrogenase compare
HMPREF1181_RS15475 -1.5 -7.1 AhpC/TSA family protein compare
HMPREF1181_RS06370 -1.5 -4.7 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase compare
HMPREF1181_RS08645 -1.4 -6.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1181_RS16640 -1.4 -1.6 hypothetical protein compare
HMPREF1181_RS02105 -1.4 -7.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1181_RS09265 -1.4 -2.3 3-dehydroquinate synthase compare
HMPREF1181_RS16000 -1.4 -10.0 threonine/serine exporter family protein compare
HMPREF1181_RS04815 -1.3 -6.5 inositol-3-phosphate synthase compare
HMPREF1181_RS12515 -1.3 -8.5 6-phosphogluconolactonase compare
HMPREF1181_RS06130 -1.3 -6.7 glutamine-hydrolyzing GMP synthase compare
HMPREF1181_RS04930 -1.3 -2.6 uridine kinase compare
HMPREF1181_RS00900 -1.3 -2.4 rubredoxin compare
HMPREF1181_RS06505 -1.2 -2.5 ribulose-phosphate 3-epimerase compare
HMPREF1181_RS15235 -1.2 -2.6 UvrD-helicase domain-containing protein compare
HMPREF1181_RS01320 -1.2 -7.2 glycosyltransferase compare
HMPREF1181_RS04125 -1.2 -6.3 hypothetical protein compare
HMPREF1181_RS07450 -1.2 -4.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1181_RS09000 -1.2 -4.7 NADH-quinone oxidoreductase subunit A compare
HMPREF1181_RS06660 -1.2 -3.8 hypothetical protein compare
HMPREF1181_RS04440 -1.2 -6.3 MFS transporter compare
HMPREF1181_RS00960 -1.2 -1.6 adenosine kinase compare
HMPREF1181_RS04590 -1.2 -5.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1181_RS09005 -1.2 -5.1 NADH-quinone oxidoreductase subunit B compare
HMPREF1181_RS15240 -1.2 -4.4 PD-(D/E)XK nuclease family protein compare
HMPREF1181_RS13230 -1.2 -7.5 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1181_RS00335 -1.1 -7.4 TetR/AcrR family transcriptional regulator compare
HMPREF1181_RS08725 -1.1 -2.6 50S ribosomal protein L9 compare
HMPREF1181_RS16950 -1.1 -8.3 RNA polymerase sigma factor compare
HMPREF1181_RS15745 -1.1 -2.3 DUF4134 domain-containing protein compare
HMPREF1181_RS05475 -1.1 -5.2 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1181_RS04130 -1.1 -8.3 SLBB domain-containing protein compare
HMPREF1181_RS04925 -1.1 -1.2 Dabb family protein compare
HMPREF1181_RS09010 -1.1 -5.9 NADH-quinone oxidoreductase subunit D compare
HMPREF1181_RS12525 -1.1 -2.7 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
HMPREF1181_RS09040 -1.1 -7.8 NADH-quinone oxidoreductase subunit M compare
HMPREF1181_RS10165 -1.1 -2.0 hypothetical protein compare
HMPREF1181_RS06495 -1.1 -1.7 DHH family phosphoesterase compare
HMPREF1181_RS09045 -1.1 -7.9 NADH-quinone oxidoreductase subunit N compare
HMPREF1181_RS09015 -1.1 -4.4 NADH-quinone oxidoreductase subunit NuoH compare
HMPREF1181_RS09035 -1.0 -7.2 NADH-quinone oxidoreductase subunit L compare
HMPREF1181_RS05660 -1.0 -3.1 ATP-binding protein compare
HMPREF1181_RS09970 -1.0 -2.4 helix-turn-helix domain-containing protein compare
HMPREF1181_RS16420 -1.0 -9.5 patatin-like phospholipase family protein compare
HMPREF1181_RS07870 -1.0 -4.1 YicC family protein compare
HMPREF1181_RS09025 -1.0 -6.7 NADH-quinone oxidoreductase subunit J compare
HMPREF1181_RS05315 -1.0 -4.9 copper resistance protein NlpE N-terminal domain-containing protein compare
HMPREF1181_RS00035 -1.0 -3.4 thiamine diphosphokinase compare
HMPREF1181_RS04200 -0.9 -1.8 hypothetical protein compare
HMPREF1181_RS03220 -0.9 -2.1 DUF59 domain-containing protein compare
HMPREF1181_RS09100 -0.9 -3.2 DUF1573 domain-containing protein compare
HMPREF1181_RS08995 -0.9 -4.1 hypothetical protein compare
HMPREF1181_RS14095 -0.9 -2.6 DNA alkylation repair protein compare
HMPREF1181_RS06085 -0.9 -3.1 aspartate 1-decarboxylase compare
HMPREF1181_RS09020 -0.9 -1.6 4Fe-4S binding protein compare
HMPREF1181_RS08190 -0.9 -3.1 cardiolipin synthase compare
HMPREF1181_RS02070 -0.9 -2.6 DNA polymerase I compare
HMPREF1181_RS09125 -0.9 -3.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1181_RS01310 -0.9 -4.1 NTP transferase domain-containing protein compare
HMPREF1181_RS11710 -0.9 -3.8 hypothetical protein compare
HMPREF1181_RS04465 -0.9 -2.2 tetratricopeptide repeat protein compare
HMPREF1181_RS15440 -0.9 -1.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1181_RS02530 -0.9 -2.2 shikimate kinase compare
HMPREF1181_RS13360 -0.8 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1181_RS09685 -0.8 -1.6 DUF3989 domain-containing protein compare
HMPREF1181_RS09030 -0.8 -1.6 NADH-quinone oxidoreductase subunit NuoK compare
HMPREF1181_RS16590 -0.8 -2.0 elongation factor 4 compare
HMPREF1181_RS01315 -0.8 -6.1 hypothetical protein compare
HMPREF1181_RS16305 -0.8 -6.8 translocation/assembly module TamB compare
HMPREF1181_RS09260 -0.8 -1.7 hypothetical protein compare
HMPREF1181_RS12740 -0.8 -4.2 energy-dependent translational throttle protein EttA compare
HMPREF1181_RS04975 -0.8 -5.8 GGGtGRT protein compare
HMPREF1181_RS09215 -0.8 -2.3 M23 family metallopeptidase compare
HMPREF1181_RS00940 -0.8 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1181_RS06160 -0.8 -4.1 dCMP deaminase family protein compare
HMPREF1181_RS01730 -0.8 -4.6 class I SAM-dependent methyltransferase compare
HMPREF1181_RS01305 -0.8 -6.1 N-acetylneuraminate synthase family protein compare
HMPREF1181_RS10835 -0.8 -5.7 tetratricopeptide repeat protein compare
HMPREF1181_RS14610 -0.8 -3.3 DUF4296 domain-containing protein compare
HMPREF1181_RS06600 -0.8 -3.3 DoxX family protein compare
HMPREF1181_RS10620 -0.7 -1.9 YkgB family protein compare
HMPREF1181_RS16410 -0.7 -5.3 ATP-dependent Clp protease ATP-binding subunit compare
HMPREF1181_RS14180 -0.7 -4.2 dihydroorotate dehydrogenase compare
HMPREF1181_RS15050 -0.7 -4.7 F0F1 ATP synthase subunit gamma compare
HMPREF1181_RS01915 -0.7 -3.5 RNA methyltransferase compare
HMPREF1181_RS14020 -0.7 -1.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1181_RS05230 -0.7 -1.1 hypothetical protein compare
HMPREF1181_RS06400 -0.7 -1.1 hemerythrin domain-containing protein compare
HMPREF1181_RS03390 -0.7 -2.7 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1181_RS08625 -0.7 -3.4 GtrA family protein compare
HMPREF1181_RS15085 -0.7 -3.0 ATP synthase F1 subunit epsilon compare
HMPREF1181_RS15120 -0.7 -1.2 electron transport complex subunit RsxC compare
HMPREF1181_RS14185 -0.7 -4.7 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1181_RS06545 -0.7 -4.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1181_RS07645 -0.7 -3.3 thiamine-phosphate kinase compare
HMPREF1181_RS00020 -0.7 -1.5 mechanosensitive ion channel compare
HMPREF1181_RS07880 -0.7 -0.9 DUF4290 domain-containing protein compare
HMPREF1181_RS14860 -0.7 -4.7 hypothetical protein compare
HMPREF1181_RS06165 -0.7 -3.7 S41 family peptidase compare
HMPREF1181_RS09615 -0.7 -1.9 hypothetical protein compare
HMPREF1181_RS12045 -0.7 -1.0 ParA family protein compare
HMPREF1181_RS15670 -0.7 -1.6 cobalamin biosynthesis protein CobD compare
HMPREF1181_RS14340 -0.7 -2.9 endopeptidase La compare
HMPREF1181_RS05750 -0.7 -1.9 tetratricopeptide repeat protein compare
HMPREF1181_RS14395 -0.7 -3.1 FHA domain-containing protein compare
HMPREF1181_RS14600 -0.7 -5.7 BamA/TamA family outer membrane protein compare
HMPREF1181_RS04970 -0.7 -3.5 nitrogen-fixing protein NifU compare
HMPREF1181_RS17165 -0.6 -2.1 phage integrase SAM-like domain-containing protein compare
HMPREF1181_RS11825 -0.6 -1.5 hypothetical protein compare
HMPREF1181_RS00265 -0.6 -3.8 23S ribosomal RNA compare
HMPREF1181_RS15070 -0.6 -1.4 ATP synthase F0 subunit C compare
HMPREF1181_RS10580 -0.6 -1.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1181_RS12465 -0.6 -1.5 DUF4492 domain-containing protein compare
HMPREF1181_RS08340 -0.6 -3.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1181_RS17795 -0.6 -1.6 hypothetical protein compare
HMPREF1181_RS00865 -0.6 -2.1 helix-turn-helix transcriptional regulator compare
HMPREF1181_RS09200 -0.6 -4.5 transglycosylase SLT domain-containing protein compare
HMPREF1181_RS01710 -0.6 -3.0 tRNA pseudouridine(55) synthase TruB compare
HMPREF1181_RS09385 -0.6 -2.3 nucleoside deaminase compare
HMPREF1181_RS18080 -0.6 -2.5 hypothetical protein compare
HMPREF1181_RS04370 -0.6 -3.2 glycosyltransferase family 4 protein compare
HMPREF1181_RS13340 -0.6 -4.5 tetratricopeptide repeat protein compare
HMPREF1181_RS11545 -0.6 -2.1 DUF3872 domain-containing protein compare
HMPREF1181_RS15565 -0.6 -1.6 DUF2807 domain-containing protein compare
HMPREF1181_RS02275 -0.6 -1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1181_RS10965 -0.6 -1.4 HU family DNA-binding protein compare
HMPREF1181_RS13655 -0.6 -2.6 TIR domain-containing protein compare
HMPREF1181_RS13295 -0.6 -4.3 DUF4199 domain-containing protein compare
HMPREF1181_RS14865 -0.6 -4.8 tyrosine-protein kinase compare
HMPREF1181_RS09240 -0.6 -2.4 DUF3822 family protein compare
HMPREF1181_RS15090 -0.6 -4.9 F0F1 ATP synthase subunit beta compare
HMPREF1181_RS04385 -0.6 -4.1 glycosyl transferase compare
HMPREF1181_RS00625 -0.6 -2.9 tyrosine recombinase XerC compare
HMPREF1181_RS11705 -0.6 -3.8 hypothetical protein compare
HMPREF1181_RS04380 -0.6 -3.0 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source complex media MRS in Bacteroides stercoris CC31F

For carbon source complex media MRS across organisms