Experiment set2S490 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_all64 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
GFF249 -6.6 -4.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF1575 -6.5 -4.4 Nudix-related transcriptional regulator NrtR compare
GFF5566 -5.0 -3.4 FIG002207: Probable transmembrane protein compare
GFF245 -5.0 -3.4 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF1222 -5.0 -7.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF5559 -4.9 -5.2 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF3695 -4.8 -3.3 FIG003089: Probable transmembrane protein compare
GFF3690 -4.7 -3.2 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF3692 -4.4 -4.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1228 -4.4 -3.0 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3682 -4.4 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF3361 -4.4 -11.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3686 -4.3 -4.1 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF5772 -4.2 -2.9 Phosphomannomutase (EC 5.4.2.8) compare
GFF3363 -4.1 -16.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3687 -4.1 -3.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF2574 -4.0 -4.7 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF3360 -4.0 -24.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5561 -3.9 -5.9 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF5584 -3.9 -9.8 DNA polymerase I (EC 2.7.7.7) compare
GFF590 -3.8 -2.6 Sugar kinases, ribokinase family compare
GFF2615 -3.8 -6.2 Ferric uptake regulation protein FUR compare
GFF4600 -3.7 -9.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF709 -3.6 -3.4 Cysteine synthase B (EC 2.5.1.47) compare
GFF1227 -3.5 -2.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF2894 -3.5 -2.4 Putative translation initiation inhibitor, yjgF family compare
GFF1341 -3.4 -5.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF3803 -3.4 -8.4 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
GFF3684 -3.4 -3.2 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF1764 -3.4 -4.0 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF4962 -3.2 -4.8 Excinuclease ABC subunit B compare
GFF4889 -3.2 -3.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1350 -3.2 -3.1 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF2573 -3.2 -8.5 Peptide deformylase (EC 3.5.1.88) compare
GFF4535 -3.1 -3.6 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1787 -3.1 -9.9 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3694 -3.1 -3.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF775 -3.1 -2.0 Cell division protein FtsK compare
GFF2923 -3.0 -8.4 Cytochrome c-type biogenesis protein ResA compare
GFF5766 -2.8 -6.1 PMID: 11481431 compare
GFF1767 -2.8 -2.7 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF770 -2.8 -15.5 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF3888 -2.8 -3.1 Biopolymer transport protein ExbD/TolR compare
GFF4292 -2.7 -5.5 Oxidoreductase probably involved in sulfite reduction compare
GFF1339 -2.6 -6.9 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1839 -2.6 -11.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF2936 -2.6 -5.1 Proposed lipoate regulatory protein YbeD compare
GFF248 -2.6 -3.4 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF5340 -2.6 -2.8 Outer membrane protein A precursor compare
GFF1788 -2.6 -10.4 Probable proline rich signal peptide protein compare
GFF2018 -2.6 -8.9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2495 -2.5 -14.2 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF4243 -2.5 -6.0 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF1354 -2.5 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF222 -2.4 -3.2 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF4861 -2.4 -6.4 Mlr7403 protein compare
GFF5110 -2.4 -9.5 Phytoene synthase (EC 2.5.1.32) compare
GFF2043 -2.4 -13.8 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster compare
GFF4293 -2.4 -12.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF4534 -2.4 -5.8 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF4788 -2.3 -17.2 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF4893 -2.3 -2.9 Nitrogen regulation protein NR(I) compare
GFF697 -2.2 -8.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF4042 -2.2 -5.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF5734 -2.1 -3.0 Ribosome small subunit-stimulated GTPase EngC compare
GFF5497 -2.1 -12.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF5173 -2.1 -2.4 MotA/TolQ/ExbB proton channel family protein compare
GFF2036 -2.0 -15.1 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF4513 -2.0 -11.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF689 -2.0 -9.4 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF688 -2.0 -8.8 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF2512 -2.0 -5.7 Exported zinc metalloprotease YfgC precursor compare
GFF1267 -1.9 -11.4 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF1803 -1.9 -2.1 Translation elongation factor G compare
GFF3310 -1.9 -2.2 Transcriptional regulator, GntR family compare
GFF5742 -1.9 -3.9 Probable transmembrane protein compare
GFF3933 -1.9 -5.4 membrane protein, putative compare
GFF1916 -1.8 -15.1 Probable transmembrane protein compare
GFF1666 -1.8 -2.6 Holliday junction DNA helicase RuvA compare
GFF3326 -1.8 -10.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF3880 -1.7 -7.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4731 -1.7 -12.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF57 -1.7 -1.7 hypothetical protein compare
GFF589 -1.7 -2.0 Probable transmembrane protein compare
GFF3324 -1.7 -11.5 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF2485 -1.7 -5.0 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF5509 -1.7 -4.3 Gluconate utilization system Gnt-I transcriptional repressor compare
GFF4888 -1.7 -8.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1011 -1.7 -8.2 Transcriptional regulator, IclR family compare
GFF1862 -1.7 -9.9 Probable glycosyltransferase compare
GFF4043 -1.6 -10.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF5771 -1.6 -5.1 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF3838 -1.6 -2.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF1861 -1.6 -13.5 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF693 -1.6 -2.4 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF3356 -1.6 -4.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF494 -1.6 -1.5 hypothetical protein compare
GFF1858 -1.6 -9.4 glycosyl transferase family 2 compare
GFF1859 -1.5 -12.6 CgeB family protein compare
GFF1846 -1.5 -12.0 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF676 -1.5 -6.5 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF5737 -1.5 -8.0 LSU ribosomal protein L19p compare
GFF5228 -1.5 -10.3 Transcriptional regulator, TetR family compare
GFF547 -1.5 -3.8 Tyrosine recombinase XerC compare
GFF691 -1.5 -3.3 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF4892 -1.5 -7.5 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1856 -1.5 -11.6 hypothetical protein compare
GFF138 -1.5 -3.9 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
GFF2718 -1.5 -7.9 21 kDa hemolysin precursor compare
GFF1845 -1.5 -10.2 O-antigen export system, permease protein compare
GFF5768 -1.5 -3.7 Putative O-antigen biosynthesis protein precursor compare
GFF1865 -1.5 -12.4 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF1848 -1.4 -10.4 hypothetical protein compare
GFF1855 -1.4 -11.4 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF2347 -1.4 -5.5 tRNA-Pro-CGG compare
GFF1853 -1.4 -10.0 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF984 -1.4 -2.1 hypothetical protein compare
GFF1851 -1.4 -11.4 hypothetical protein compare
GFF2806 -1.4 -1.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF598 -1.4 -3.5 CcsA-related protein compare
GFF5143 -1.4 -3.0 TPR repeat precursor compare
GFF3355 -1.4 -2.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF2614 -1.4 -1.9 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF3311 -1.3 -2.9 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF2123 -1.3 -3.0 Translation initiation factor 1 compare
GFF5577 -1.3 -3.8 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF5322 -1.3 -1.6 hypothetical protein compare
GFF4290 -1.3 -7.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1842 -1.3 -10.7 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF463 -1.3 -1.7 Transcriptional regulator, GntR family compare
GFF301 -1.3 -2.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3354 -1.3 -6.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3438 -1.3 -7.0 Poly(A) polymerase (EC 2.7.7.19) compare
GFF2027 -1.3 -3.0 hypothetical protein compare
GFF2040 -1.3 -7.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3971 -1.3 -3.1 DNA topoisomerase III (EC 5.99.1.2) compare
GFF677 -1.3 -2.0 FIG00433688: hypothetical protein compare
GFF1864 -1.3 -6.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF1331 -1.3 -7.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2367 -1.3 -5.6 hypothetical protein compare
GFF4786 -1.2 -10.1 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF1854 -1.2 -6.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1844 -1.2 -9.9 Aminotransferase compare
GFF3530 -1.2 -1.7 ATP-dependent RNA helicase RhlE compare
GFF1715 -1.2 -9.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
GFF1843 -1.2 -8.8 hypothetical protein compare
GFF2559 -1.2 -7.2 hypothetical protein compare
GFF4289 -1.2 -8.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF4098 -1.2 -2.4 Glutamate racemase (EC 5.1.1.3) compare
GFF4785 -1.2 -8.6 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF1204 -1.2 -4.6 Regulatory protein of benzoate catabolism compare
GFF630 -1.2 -5.1 GTP-binding and nucleic acid-binding protein YchF compare
GFF4523 -1.2 -5.5 FIG000859: hypothetical protein YebC compare
GFF2443 -1.2 -4.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
GFF4944 -1.1 -7.9 transcriptional regulator, TetR family compare
GFF4252 -1.1 -5.3 FIG000557: hypothetical protein co-occurring with RecR compare
GFF235 -1.1 -2.3 Putative RNA polymerase sigma factor compare
GFF5491 -1.1 -2.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1741 -1.1 -10.0 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
GFF3308 -1.1 -3.5 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
GFF1257 -1.1 -2.2 FAD/FMN-containing dehydrogenases compare
GFF2179 -1.1 -1.5 LysR family transcriptional regulator YbhD compare
GFF2562 -1.1 -7.2 hypothetical protein compare
GFF698 -1.1 -3.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF1169 -1.1 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF580 -1.1 -6.7 TldD protein, part of TldE/TldD proteolytic complex compare
GFF2500 -1.1 -5.3 RecA protein compare
GFF4229 -1.1 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
GFF3934 -1.1 -6.1 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF5183 -1.1 -1.4 glutamyl-Q-tRNA synthetase compare
GFF1841 -1.1 -8.7 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF2897 -1.1 -3.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2560 -1.1 -5.7 hypothetical protein compare
GFF3655 -1.1 -6.5 TldE protein, part of TldE/TldD proteolytic complex compare
GFF3358 -1.0 -5.5 Translation initiation factor 2 compare
GFF3881 -1.0 -4.8 Lipoprotein NlpD compare
GFF3587 -1.0 -3.3 Formiminoglutamase (EC 3.5.3.8) compare
GFF29 -1.0 -2.7 Transcriptional regulator, MarR family compare
GFF5759 -1.0 -4.9 Glutaryl-CoA dehydrogenase (EC 1.3.99.7) compare
GFF5280 -1.0 -1.5 FIG00641052: hypothetical protein compare
GFF2466 -1.0 -5.3 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF3357 -1.0 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF1223 -1.0 -4.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
GFF426 -1.0 -2.8 Transcriptional regulator, GntR family compare
GFF627 -1.0 -5.5 N-formylglutamate deformylase (EC 3.5.1.68) compare
GFF1338 -1.0 -6.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
GFF2628 -1.0 -1.5 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF2715 -1.0 -3.2 rRNA small subunit methyltransferase I compare
GFF3278 -1.0 -1.6 Urea ABC transporter, ATPase protein UrtD compare
GFF232 -1.0 -2.5 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
GFF5146 -1.0 -5.6 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
GFF724 -1.0 -4.7 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF4868 -1.0 -3.3 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF2037 -1.0 -7.9 glutamine synthetase family protein compare
GFF4856 -1.0 -5.9 HflK protein compare
GFF4291 -1.0 -3.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF5461 -0.9 -1.8 Tyrosine recombinase XerD compare
GFF1468 -0.9 -1.5 putative inner membrane protein compare
GFF1847 -0.9 -8.3 hypothetical protein compare
GFF2539 -0.9 -2.7 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_all64 across organisms