Experiment set2S489 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_all64 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
GFF249 -6.4 -4.4 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF1575 -6.4 -4.4 Nudix-related transcriptional regulator NrtR compare
GFF3687 -5.5 -3.8 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1222 -5.2 -8.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF5566 -4.9 -3.4 FIG002207: Probable transmembrane protein compare
GFF245 -4.8 -3.3 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF3888 -4.6 -3.1 Biopolymer transport protein ExbD/TolR compare
GFF3686 -4.5 -3.1 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF3690 -4.5 -3.1 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF3692 -4.4 -4.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF3361 -4.4 -10.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1228 -4.3 -2.9 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3682 -4.2 -2.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF3363 -4.1 -12.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3360 -4.1 -23.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2574 -3.9 -4.6 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF3684 -3.9 -2.6 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF709 -3.8 -2.6 Cysteine synthase B (EC 2.5.1.47) compare
GFF1341 -3.7 -3.6 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF4889 -3.7 -2.6 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF590 -3.7 -2.5 Sugar kinases, ribokinase family compare
GFF5561 -3.7 -6.0 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF3695 -3.6 -3.4 FIG003089: Probable transmembrane protein compare
GFF5584 -3.5 -9.4 DNA polymerase I (EC 2.7.7.7) compare
GFF5559 -3.5 -5.8 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF2923 -3.5 -8.1 Cytochrome c-type biogenesis protein ResA compare
GFF1227 -3.4 -2.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF5340 -3.4 -3.9 Outer membrane protein A precursor compare
GFF2894 -3.4 -2.3 Putative translation initiation inhibitor, yjgF family compare
GFF1350 -3.3 -2.3 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF1787 -3.3 -9.6 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF770 -3.3 -16.1 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF2573 -3.2 -8.6 Peptide deformylase (EC 3.5.1.88) compare
GFF1354 -3.2 -3.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF4600 -3.1 -9.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3694 -3.1 -3.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF248 -3.0 -4.0 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF2027 -3.0 -8.6 hypothetical protein compare
GFF4535 -2.9 -3.4 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1764 -2.9 -3.9 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF5766 -2.9 -6.0 PMID: 11481431 compare
GFF5772 -2.8 -3.2 Phosphomannomutase (EC 5.4.2.8) compare
GFF3803 -2.8 -7.9 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
GFF5461 -2.8 -3.2 Tyrosine recombinase XerD compare
GFF5110 -2.8 -9.4 Phytoene synthase (EC 2.5.1.32) compare
GFF222 -2.7 -3.1 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF4293 -2.7 -13.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF1788 -2.7 -9.8 Probable proline rich signal peptide protein compare
GFF4292 -2.6 -6.8 Oxidoreductase probably involved in sulfite reduction compare
GFF698 -2.6 -5.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF4788 -2.6 -19.2 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF1767 -2.6 -3.0 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF2018 -2.6 -8.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2615 -2.6 -5.8 Ferric uptake regulation protein FUR compare
GFF2043 -2.5 -14.9 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster compare
GFF693 -2.5 -3.3 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF1839 -2.4 -11.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF3933 -2.4 -5.6 membrane protein, putative compare
GFF2936 -2.4 -4.7 Proposed lipoate regulatory protein YbeD compare
GFF5497 -2.4 -13.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF697 -2.3 -9.6 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF3356 -2.3 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF2495 -2.3 -13.6 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF4731 -2.2 -15.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF2036 -2.2 -15.6 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF775 -2.2 -2.1 Cell division protein FtsK compare
GFF4962 -2.2 -4.5 Excinuclease ABC subunit B compare
GFF4042 -2.2 -6.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF5768 -2.2 -9.8 Putative O-antigen biosynthesis protein precursor compare
GFF1916 -2.2 -17.3 Probable transmembrane protein compare
GFF3326 -2.1 -12.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF2512 -2.1 -5.4 Exported zinc metalloprotease YfgC precursor compare
GFF4534 -2.1 -5.4 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF1848 -2.1 -14.2 hypothetical protein compare
GFF1267 -2.0 -11.4 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF4888 -2.0 -9.0 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1854 -2.0 -7.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3324 -2.0 -12.9 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF4243 -2.0 -5.2 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF689 -2.0 -9.1 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF2123 -2.0 -4.2 Translation initiation factor 1 compare
GFF1846 -2.0 -16.1 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF1853 -1.9 -11.2 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF1864 -1.9 -8.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF3357 -1.9 -3.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3880 -1.9 -8.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF1855 -1.9 -15.3 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF1851 -1.9 -14.6 hypothetical protein compare
GFF1856 -1.9 -13.6 hypothetical protein compare
GFF1861 -1.9 -15.5 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF4513 -1.8 -9.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF4892 -1.8 -11.7 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1862 -1.8 -9.6 Probable glycosyltransferase compare
GFF1845 -1.8 -12.6 O-antigen export system, permease protein compare
GFF1339 -1.8 -6.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1666 -1.8 -2.4 Holliday junction DNA helicase RuvA compare
GFF3311 -1.8 -3.9 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF1859 -1.8 -14.1 CgeB family protein compare
GFF1865 -1.8 -13.8 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF688 -1.8 -6.1 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF5577 -1.7 -4.3 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF1858 -1.7 -9.4 glycosyl transferase family 2 compare
GFF5143 -1.7 -3.8 TPR repeat precursor compare
GFF691 -1.7 -5.3 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF5737 -1.7 -7.8 LSU ribosomal protein L19p compare
GFF4786 -1.7 -12.6 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF2367 -1.7 -5.9 hypothetical protein compare
GFF4861 -1.6 -5.0 Mlr7403 protein compare
GFF5509 -1.6 -4.1 Gluconate utilization system Gnt-I transcriptional repressor compare
GFF3308 -1.6 -4.1 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
GFF4043 -1.6 -10.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2614 -1.6 -2.8 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF5767 -1.6 -3.5 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF1842 -1.6 -13.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF5228 -1.6 -11.2 Transcriptional regulator, TetR family compare
GFF4290 -1.6 -9.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF5734 -1.6 -3.1 Ribosome small subunit-stimulated GTPase EngC compare
GFF5759 -1.6 -8.1 Glutaryl-CoA dehydrogenase (EC 1.3.99.7) compare
GFF676 -1.6 -7.5 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF4785 -1.6 -10.0 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF5742 -1.6 -3.3 Probable transmembrane protein compare
GFF3438 -1.6 -6.8 Poly(A) polymerase (EC 2.7.7.19) compare
GFF2347 -1.5 -5.1 tRNA-Pro-CGG compare
GFF1847 -1.5 -13.6 hypothetical protein compare
GFF3881 -1.5 -7.1 Lipoprotein NlpD compare
GFF2040 -1.5 -8.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3310 -1.5 -2.1 Transcriptional regulator, GntR family compare
GFF2718 -1.5 -7.3 21 kDa hemolysin precursor compare
GFF5491 -1.5 -2.9 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1715 -1.5 -11.8 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
GFF5771 -1.4 -6.8 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF598 -1.4 -1.6 CcsA-related protein compare
GFF1257 -1.4 -2.6 FAD/FMN-containing dehydrogenases compare
GFF4289 -1.4 -8.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF3358 -1.4 -5.6 Translation initiation factor 2 compare
GFF1843 -1.4 -10.8 hypothetical protein compare
GFF1011 -1.4 -7.8 Transcriptional regulator, IclR family compare
GFF5173 -1.4 -2.1 MotA/TolQ/ExbB proton channel family protein compare
GFF2576 -1.4 -1.4 Probable transmembrane protein compare
GFF3354 -1.4 -7.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF4893 -1.3 -1.6 Nitrogen regulation protein NR(I) compare
GFF1860 -1.3 -10.3 Radical SAM compare
GFF1844 -1.3 -10.8 Aminotransferase compare
GFF138 -1.3 -2.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
GFF1841 -1.3 -10.3 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF3698 -1.3 -1.8 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) compare
GFF2806 -1.3 -2.0 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF4229 -1.3 -3.9 Exopolyphosphatase (EC 3.6.1.11) compare
GFF2500 -1.3 -6.3 RecA protein compare
GFF1338 -1.2 -7.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
GFF1741 -1.2 -11.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
GFF3655 -1.2 -6.4 TldE protein, part of TldE/TldD proteolytic complex compare
GFF2731 -1.2 -4.0 Two-component system response regulator compare
GFF4870 -1.2 -5.3 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF3940 -1.2 -2.3 Molybdenum cofactor biosynthesis protein MoaE compare
GFF4297 -1.2 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF627 -1.2 -6.3 N-formylglutamate deformylase (EC 3.5.1.68) compare
GFF4944 -1.2 -7.6 transcriptional regulator, TetR family compare
GFF1863 -1.2 -6.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1544 -1.2 -2.7 Transcriptional regulatory protein compare
GFF4856 -1.2 -5.9 HflK protein compare
GFF724 -1.1 -4.4 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF2179 -1.1 -1.2 LysR family transcriptional regulator YbhD compare
GFF3800 -1.1 -3.3 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF580 -1.1 -7.3 TldD protein, part of TldE/TldD proteolytic complex compare
GFF5032 -1.1 -1.2 Glyoxalase/bleomycin resistance protein (EC 4.4.1.5) compare
GFF1711 -1.1 -6.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF1331 -1.1 -6.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF4101 -1.1 -2.4 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF2037 -1.1 -9.2 glutamine synthetase family protein compare
GFF2266 -1.1 -2.5 hypothetical protein compare
GFF1075 -1.1 -2.7 tRNA-Arg-CCT compare
GFF4592 -1.1 -7.4 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
GFF5790 -1.1 -1.1 tRNA-Leu-TAG compare
GFF3829 -1.1 -2.6 granule-associated protein compare
GFF4291 -1.1 -5.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF696 -1.1 -5.1 Probable transmembrane protein compare
GFF716 -1.1 -6.1 Glyoxalase family protein compare
GFF324 -1.1 -1.8 FIG00537944: hypothetical protein compare
GFF1803 -1.0 -1.4 Translation elongation factor G compare
GFF1716 -1.0 -5.9 Transcriptional regulator, AraC family compare
GFF29 -1.0 -3.3 Transcriptional regulator, MarR family compare
GFF3343 -1.0 -9.0 Translation elongation factor LepA compare
GFF2507 -1.0 -3.2 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF708 -1.0 -7.6 Nucleoside-diphosphate-sugar epimerases compare
GFF4346 -1.0 -7.2 GTP-binding protein TypA/BipA compare
GFF1973 -1.0 -8.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
GFF1204 -1.0 -3.7 Regulatory protein of benzoate catabolism compare
GFF1733 -1.0 -7.1 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
GFF3530 -1.0 -3.1 ATP-dependent RNA helicase RhlE compare
GFF4001 -1.0 -2.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
GFF2602 -1.0 -1.9 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
GFF4501 -1.0 -4.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
GFF2323 -1.0 -6.3 Transcriptional regulator, IclR family compare
GFF2566 -1.0 -8.2 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF4523 -1.0 -4.9 FIG000859: hypothetical protein YebC compare
GFF1223 -1.0 -4.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
GFF3420 -1.0 -4.0 Acetylornithine aminotransferase (EC 2.6.1.11) compare
GFF5261 -0.9 -1.7 Transcriptional regulator, LuxR family compare
GFF3653 -0.9 -3.6 Molybdopterin biosynthesis molybdochelatase MogA compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_all64 in Hydrogenophaga sp. GW460-11-11-14-LB1

For carbon source Ying_all64 across organisms