Experiment set2S488 for Bacteroides stercoris CC31F

Compare to:

Pectin from citrus peel; filtered 1 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1181_RS16620 -8.6 -4.8 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1181_RS03440 -8.3 -8.1 pyrroline-5-carboxylate reductase compare
HMPREF1181_RS06570 -8.0 -7.8 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1181_RS14990 -7.9 -5.5 aspartate carbamoyltransferase compare
HMPREF1181_RS11050 -7.9 -5.4 diaminopimelate decarboxylase compare
HMPREF1181_RS03445 -7.6 -7.4 aspartate aminotransferase family protein compare
HMPREF1181_RS00050 -7.4 -15.0 threonine synthase compare
HMPREF1181_RS08230 -7.4 -4.1 hypothetical protein compare
HMPREF1181_RS06565 -7.3 -5.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1181_RS15320 -7.2 -5.0 tryptophan synthase subunit beta compare
HMPREF1181_RS01245 -7.2 -3.9 type II 3-dehydroquinate dehydratase compare
HMPREF1181_RS08795 -7.0 -9.5 hypothetical protein compare
HMPREF1181_RS03465 -6.8 -4.7 GNAT family N-acetyltransferase compare
HMPREF1181_RS15350 -6.8 -10.7 tryptophan synthase subunit alpha compare
HMPREF1181_RS14125 -6.6 -11.9 3-isopropylmalate dehydrogenase compare
HMPREF1181_RS02880 -6.5 -9.0 M20 family metallo-hydrolase compare
HMPREF1181_RS03460 -6.5 -9.9 argininosuccinate synthase compare
HMPREF1181_RS15455 -6.4 -7.6 altronate dehydratase compare
HMPREF1181_RS15440 -6.4 -3.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HMPREF1181_RS00165 -6.4 -9.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1181_RS16865 -6.4 -4.4 D-3-phosphoglycerate dehydrogenase compare
HMPREF1181_RS03450 -6.4 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1181_RS14145 -6.3 -13.4 3-isopropylmalate dehydratase large subunit compare
HMPREF1181_RS15345 -6.3 -8.6 phosphoribosylanthranilate isomerase compare
HMPREF1181_RS03410 -6.3 -12.1 argininosuccinate lyase compare
HMPREF1181_RS08950 -6.2 -11.7 MFS transporter compare
HMPREF1181_RS09235 -6.1 -8.1 hypothetical protein compare
HMPREF1181_RS06575 -6.0 -6.9 prephenate dehydrogenase compare
HMPREF1181_RS15335 -5.9 -4.1 anthranilate phosphoribosyltransferase compare
HMPREF1181_RS14140 -5.9 -4.8 3-isopropylmalate dehydratase small subunit compare
HMPREF1181_RS15325 -5.8 -5.7 anthranilate synthase component I family protein compare
HMPREF1181_RS03235 -5.8 -4.0 elongation factor P compare
HMPREF1181_RS06355 -5.8 -8.9 orotidine-5'-phosphate decarboxylase compare
HMPREF1181_RS02530 -5.8 -3.9 shikimate kinase compare
HMPREF1181_RS00060 -5.8 -14.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1181_RS15340 -5.7 -3.9 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1181_RS03325 -5.7 -13.3 glutamate 5-kinase compare
HMPREF1181_RS08050 -5.5 -3.1 hypothetical protein compare
HMPREF1181_RS14180 -5.5 -9.9 dihydroorotate dehydrogenase compare
HMPREF1181_RS02540 -5.5 -5.4 acetylglutamate kinase compare
HMPREF1181_RS03315 -5.4 -10.9 N-acetylornithine carbamoyltransferase compare
HMPREF1181_RS08315 -5.4 -8.2 ketol-acid reductoisomerase compare
HMPREF1181_RS11075 -5.4 -11.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1181_RS14150 -5.3 -10.1 2-isopropylmalate synthase compare
HMPREF1181_RS14185 -5.2 -10.5 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1181_RS13340 -5.1 -10.4 tetratricopeptide repeat protein compare
HMPREF1181_RS06660 -5.1 -3.5 hypothetical protein compare
HMPREF1181_RS14410 -5.1 -9.9 tagaturonate reductase compare
HMPREF1181_RS15445 -5.1 -3.5 sugar kinase compare
HMPREF1181_RS01615 -5.0 -5.9 polysaccharide deacetylase family protein compare
HMPREF1181_RS00055 -5.0 -9.0 cofactor-independent phosphoglycerate mutase compare
HMPREF1181_RS10195 -4.9 -9.5 SMI1/KNR4 family protein compare
HMPREF1181_RS06100 -4.9 -8.2 DUF4270 domain-containing protein compare
HMPREF1181_RS08595 -4.9 -8.4 aspartate--ammonia ligase compare
HMPREF1181_RS08785 -4.9 -4.8 S9 family peptidase compare
HMPREF1181_RS06560 -4.9 -4.6 prephenate dehydratase compare
HMPREF1181_RS01255 -4.7 -4.6 tetratricopeptide repeat protein compare
HMPREF1181_RS14420 -4.7 -7.8 glucuronate isomerase compare
HMPREF1181_RS06320 -4.6 -2.6 shikimate dehydrogenase compare
HMPREF1181_RS02275 -4.6 -2.6 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1181_RS16385 -4.6 -3.2 tetratricopeptide repeat protein compare
HMPREF1181_RS08335 -4.5 -16.7 dihydroxy-acid dehydratase compare
HMPREF1181_RS04860 -4.5 -11.6 histidinol dehydrogenase compare
HMPREF1181_RS05725 -4.5 -10.0 DUF4831 family protein compare
HMPREF1181_RS11070 -4.5 -8.4 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1181_RS08330 -4.3 -10.9 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1181_RS07010 -4.3 -5.9 adenylosuccinate lyase compare
HMPREF1181_RS08190 -4.3 -3.0 cardiolipin synthase compare
HMPREF1181_RS01580 -4.3 -10.7 phosphoribosylamine--glycine ligase compare
HMPREF1181_RS02450 -4.3 -1.7 hypothetical protein compare
HMPREF1181_RS04650 -4.3 -10.0 dihydroorotase compare
HMPREF1181_RS14085 -4.2 -9.4 adenylosuccinate synthase compare
HMPREF1181_RS09265 -4.2 -2.9 3-dehydroquinate synthase compare
HMPREF1181_RS15095 -4.1 -10.3 UDP-glucose 4-epimerase GalE compare
HMPREF1181_RS07480 -4.1 -9.7 ABC transporter ATP-binding protein compare
HMPREF1181_RS01325 -4.0 -12.7 glycosyltransferase compare
HMPREF1181_RS08885 -4.0 -21.5 response regulator compare
HMPREF1181_RS05800 -4.0 -5.5 hypothetical protein compare
HMPREF1181_RS07475 -4.0 -8.3 ABC transporter permease compare
HMPREF1181_RS06310 -3.9 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1181_RS05510 -3.9 -11.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1181_RS06130 -3.9 -6.0 glutamine-hydrolyzing GMP synthase compare
HMPREF1181_RS08650 -3.9 -9.1 MCE family protein compare
HMPREF1181_RS15115 -3.8 -2.6 RnfABCDGE type electron transport complex subunit D compare
HMPREF1181_RS05515 -3.8 -20.6 TonB-dependent receptor compare
HMPREF1181_RS03400 -3.8 -2.6 orotate phosphoribosyltransferase compare
HMPREF1181_RS03320 -3.8 -6.8 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1181_RS06865 -3.7 -2.6 branched-chain amino acid aminotransferase compare
HMPREF1181_RS12530 -3.7 -10.7 GDP-mannose 4,6-dehydratase compare
HMPREF1181_RS09330 -3.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1181_RS04855 -3.6 -13.2 histidinol-phosphate transaminase compare
HMPREF1181_RS15330 -3.6 -7.4 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1181_RS05665 -3.6 -2.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1181_RS07435 -3.6 -13.5 IMP dehydrogenase compare
HMPREF1181_RS08325 -3.6 -9.4 acetolactate synthase small subunit compare
HMPREF1181_RS04850 -3.6 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1181_RS04125 -3.5 -10.0 hypothetical protein compare
HMPREF1181_RS05605 -3.5 -15.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1181_RS14610 -3.4 -4.8 DUF4296 domain-containing protein compare
HMPREF1181_RS14135 -3.4 -8.9 2-isopropylmalate synthase compare
HMPREF1181_RS12535 -3.4 -8.7 GDP-L-fucose synthase compare
HMPREF1181_RS07410 -3.4 -3.0 hypothetical protein compare
HMPREF1181_RS10585 -3.4 -5.1 precorrin-4 C(11)-methyltransferase compare
HMPREF1181_RS10540 -3.3 -4.5 cobyrinate a,c-diamide synthase compare
HMPREF1181_RS18085 -3.3 -6.5 hypothetical protein compare
HMPREF1181_RS05535 -3.2 -8.8 LacI family DNA-binding transcriptional regulator compare
HMPREF1181_RS08265 -3.2 -4.5 (d)CMP kinase compare
HMPREF1181_RS10630 -3.1 -5.1 precorrin-2 C(20)-methyltransferase compare
HMPREF1181_RS08500 -3.1 -4.2 methylmalonyl-CoA mutase small subunit compare
HMPREF1181_RS03405 -3.0 -5.9 SRPBCC family protein compare
HMPREF1181_RS15660 -3.0 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1181_RS06340 -3.0 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1181_RS05540 -3.0 -7.3 SLC45 family MFS transporter compare
HMPREF1181_RS00190 -2.9 -2.0 translocation/assembly module TamB domain-containing protein compare
HMPREF1181_RS10575 -2.9 -5.2 precorrin-3B C(17)-methyltransferase compare
HMPREF1181_RS04130 -2.9 -18.0 SLBB domain-containing protein compare
HMPREF1181_RS06930 -2.9 -2.0 tRNA 2-thiouridine(34) synthase MnmA compare
HMPREF1181_RS08495 -2.9 -5.4 methylmalonyl-CoA mutase compare
HMPREF1181_RS16965 -2.8 -9.6 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1181_RS11065 -2.8 -5.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1181_RS01780 -2.8 -11.0 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1181_RS04865 -2.8 -5.0 ATP phosphoribosyltransferase compare
HMPREF1181_RS15670 -2.7 -2.8 cobalamin biosynthesis protein CobD compare
HMPREF1181_RS15655 -2.7 -3.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1181_RS10565 -2.7 -8.2 TonB-dependent receptor compare
HMPREF1181_RS15010 -2.7 -9.0 serine hydroxymethyltransferase compare
HMPREF1181_RS00185 -2.7 -2.6 BamA/TamA family outer membrane protein compare
HMPREF1181_RS05780 -2.6 -5.0 SurA N-terminal domain-containing protein compare
HMPREF1181_RS04445 -2.6 -8.5 galactokinase compare
HMPREF1181_RS04275 -2.5 -7.4 tetratricopeptide repeat protein compare
HMPREF1181_RS02505 -2.5 -9.4 UDP-galactopyranose mutase compare
HMPREF1181_RS09810 -2.5 -1.3 hypothetical protein compare
HMPREF1181_RS01320 -2.5 -6.8 glycosyltransferase compare
HMPREF1181_RS10185 -2.5 -5.6 SMI1/KNR4 family protein compare
HMPREF1181_RS14835 -2.5 -7.6 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1181_RS06505 -2.4 -2.7 ribulose-phosphate 3-epimerase compare
HMPREF1181_RS04435 -2.4 -9.9 galactose mutarotase compare
HMPREF1181_RS14235 -2.4 -4.6 carbon-nitrogen hydrolase compare
HMPREF1181_RS14790 -2.4 -10.8 alpha amylase C-terminal domain-containing protein compare
HMPREF1181_RS06155 -2.4 -9.4 DUF4847 family protein compare
HMPREF1181_RS15650 -2.3 -2.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1181_RS08935 -2.3 -6.8 glycoside hydrolase family 88 protein compare
HMPREF1181_RS02460 -2.3 -5.4 glycosyltransferase family 2 protein compare
HMPREF1181_RS15120 -2.3 -2.1 electron transport complex subunit RsxC compare
HMPREF1181_RS06085 -2.2 -4.6 aspartate 1-decarboxylase compare
HMPREF1181_RS08845 -2.2 -15.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1181_RS08880 -2.2 -11.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1181_RS03270 -2.2 -7.1 DeoR/GlpR transcriptional regulator compare
HMPREF1181_RS05375 -2.2 -2.1 DUF4286 family protein compare
HMPREF1181_RS04365 -2.2 -9.2 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1181_RS06635 -2.1 -2.3 biopolymer transporter ExbD compare
HMPREF1181_RS06190 -2.1 -3.7 tetratricopeptide repeat protein compare
HMPREF1181_RS01095 -2.1 -9.6 type I DNA topoisomerase compare
HMPREF1181_RS04440 -2.1 -5.6 MFS transporter compare
HMPREF1181_RS10610 -2.1 -2.0 ABC transporter substrate-binding protein compare
HMPREF1181_RS05520 -2.0 -10.0 DUF4982 domain-containing protein compare
HMPREF1181_RS08840 -2.0 -14.0 TonB-dependent receptor compare
HMPREF1181_RS04380 -1.9 -6.7 glycosyltransferase family 2 protein compare
HMPREF1181_RS12645 -1.9 -5.4 hypothetical protein compare
HMPREF1181_RS00940 -1.9 -1.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1181_RS04350 -1.9 -5.5 glycosyltransferase compare
HMPREF1181_RS04375 -1.8 -6.1 EpsG family protein compare
HMPREF1181_RS11305 -1.8 -5.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1181_RS04355 -1.8 -3.8 LicD family protein compare
HMPREF1181_RS10580 -1.8 -1.8 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
HMPREF1181_RS14105 -1.8 -2.2 AraC family transcriptional regulator compare
HMPREF1181_RS04370 -1.8 -6.6 glycosyltransferase family 4 protein compare
HMPREF1181_RS03390 -1.7 -4.6 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1181_RS13310 -1.7 -4.2 hypothetical protein compare
HMPREF1181_RS01315 -1.7 -8.3 hypothetical protein compare
HMPREF1181_RS03220 -1.7 -1.9 DUF59 domain-containing protein compare
HMPREF1181_RS04405 -1.7 -5.2 sugar transferase compare
HMPREF1181_RS06770 -1.7 -6.7 hypothetical protein compare
HMPREF1181_RS14995 -1.6 -4.7 aspartate carbamoyltransferase regulatory subunit compare
HMPREF1181_RS00960 -1.6 -2.0 adenosine kinase compare
HMPREF1181_RS10590 -1.6 -2.3 cobalamin biosynthesis protein CbiD compare
HMPREF1181_RS14415 -1.6 -2.9 substrate-binding domain-containing protein compare
HMPREF1181_RS09720 -1.6 -0.9 DUF4134 domain-containing protein compare
HMPREF1181_RS12045 -1.6 -1.6 ParA family protein compare
HMPREF1181_RS04800 -1.6 -5.9 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1181_RS08875 -1.6 -10.0 TonB-dependent receptor compare
HMPREF1181_RS03765 -1.6 -7.8 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1181_RS15490 -1.6 -2.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1181_RS01565 -1.6 -3.1 serine acetyltransferase compare
HMPREF1181_RS12860 -1.6 -3.9 hypothetical protein compare
HMPREF1181_RS04395 -1.5 -5.8 hypothetical protein compare
HMPREF1181_RS01310 -1.5 -8.6 NTP transferase domain-containing protein compare
HMPREF1181_RS09260 -1.5 -3.2 hypothetical protein compare
HMPREF1181_RS08725 -1.5 -2.0 50S ribosomal protein L9 compare
HMPREF1181_RS04795 -1.5 -7.3 inositol phosphorylceramide synthase compare
HMPREF1181_RS04400 -1.5 -4.8 polysaccharide biosynthesis protein compare
HMPREF1181_RS07785 -1.5 -1.2 antibiotic biosynthesis monooxygenase compare
HMPREF1181_RS03380 -1.5 -4.7 hypothetical protein compare
HMPREF1181_RS15485 -1.4 -5.7 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1181_RS01305 -1.4 -7.3 N-acetylneuraminate synthase family protein compare
HMPREF1181_RS08645 -1.4 -3.8 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1181_RS16400 -1.4 -8.6 tetratricopeptide repeat protein compare
HMPREF1181_RS01340 -1.4 -5.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1181_RS00315 -1.4 -0.8 hypothetical protein compare
HMPREF1181_RS04810 -1.4 -1.2 phosphatidylglycerophosphatase A compare


Specific Phenotypes

None in this experiment

For Bacteroides stercoris CC31F in carbon source experiments

For carbon source Pectin from citrus peel; filtered across organisms