Experiment set2S487 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_sugar7 rep B; time point 3

200 most detrimental genes:

  gene name fitness t score description  
GFF4521 +5.3 44.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4042 +3.8 21.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF831 +1.8 11.1 Heat-inducible transcription repressor HrcA compare
GFF2558 +1.5 7.9 hypothetical protein compare
GFF394 +1.4 10.1 transcriptional regulator, LuxR family compare
GFF1272 +1.4 10.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
GFF2721 +1.4 8.3 Twitching motility protein PilT compare
GFF1971 +1.2 9.6 Transcriptional regulator, TetR family compare
GFF1473 +1.2 5.5 Probable two-component sensor, near polyamine transporter compare
GFF1428 +0.9 5.3 RNA polymerase sigma factor for flagellar operon compare
GFF4005 +0.9 1.5 hypothetical protein compare
GFF3584 +0.9 1.8 FIG027190: Putative transmembrane protein compare
GFF4456 +0.9 1.9 Two-component system sensory histidine kinase compare
GFF2462 +0.9 1.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF1294 +0.9 3.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF3973 +0.9 3.5 hypothetical protein compare
GFF4473 +0.9 1.5 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF1472 +0.9 4.9 Regulatory protein, LuxR:Response regulator receiver compare
GFF5658 +0.8 2.4 Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) compare
GFF1932 +0.8 1.4 Bll5738 protein compare
GFF107 +0.8 4.5 Transcriptional regulator, LuxR family compare
GFF2732 +0.8 7.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF2039 +0.8 4.8 hypothetical protein compare
GFF5628 +0.8 1.1 Transcriptional regulator, LysR family compare
GFF3752 +0.8 2.0 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF1389 +0.8 1.5 General secretion pathway protein N compare
GFF5130 +0.8 2.2 Tricarboxylate transport transcriptional regulator TctD compare
GFF3853 +0.8 1.7 DNA-binding protein HU-beta compare
GFF4417 +0.8 1.2 Electron transfer flavoprotein, beta subunit compare
GFF3410 +0.8 2.3 Transcriptional regulator, LysR family compare
GFF1438 +0.7 4.6 Flagellar transcriptional activator FlhC compare
GFF1335 +0.7 5.2 Type IV pilus biogenesis protein PilO compare
GFF1337 +0.7 6.3 Type IV pilus biogenesis protein PilM compare
GFF1454 +0.7 3.0 Flagellum-specific ATP synthase FliI compare
GFF1336 +0.7 4.8 Type IV pilus biogenesis protein PilN compare
GFF2586 +0.7 2.0 FIG039061: hypothetical protein related to heme utilization compare
GFF5157 +0.7 4.6 Type IV fimbrial biogenesis protein PilX compare
GFF31 +0.7 1.7 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF1334 +0.7 4.1 Type IV pilus biogenesis protein PilP compare
GFF2306 +0.7 1.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF1333 +0.7 5.1 Type IV pilus biogenesis protein PilQ compare
GFF393 +0.7 5.8 Sensor histidine kinase compare
GFF5431 +0.7 1.1 Vitamin B12 ABC transporter, permease component BtuC compare
GFF392 +0.7 5.0 FOG: CheY-like receiver compare
GFF1652 +0.7 1.8 similar to protocatechuate 4,5-dioxygenase beta chain compare
GFF1495 +0.7 1.3 Tricarboxylate transport protein TctC compare
GFF3442 +0.7 1.2 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF4180 +0.7 1.4 Conjugative transfer protein TrbJ compare
GFF5705 +0.7 5.1 Transcriptional regulator, GntR family compare
GFF2567 +0.6 2.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
GFF3798 +0.6 4.2 4-oxalomesaconate hydratase (EC 4.2.1.83) compare
GFF3141 +0.6 1.6 hypothetical protein compare
GFF5072 +0.6 1.1 Taurine transport ATP-binding protein TauB compare
GFF1459 +0.6 1.9 Flagellar motor switch protein FliN compare
GFF5656 +0.6 1.6 Transcriptional regulator, TetR family compare
GFF1487 +0.6 1.8 Universal stress family protein compare
GFF4041 +0.6 2.4 hypothetical protein compare
GFF1171 +0.6 1.4 hypothetical protein compare
GFF3028 +0.6 2.6 Tricarboxylate transport sensor protein TctE compare
GFF5084 +0.6 1.9 Major membrane protein I compare
GFF3022 +0.6 3.5 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
GFF2139 +0.6 1.3 transcriptional regulator, LysR family compare
GFF3874 +0.6 1.6 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) compare
GFF1863 +0.6 4.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF366 +0.6 1.2 Probable transmembrane protein compare
GFF1439 +0.6 4.3 Flagellar transcriptional activator FlhD compare
GFF1571 +0.6 1.8 Hypothetical Nudix-like regulator compare
GFF1494 +0.6 1.7 Transcriptional regulator, LysR family compare
GFF1496 +0.6 2.0 beta-lactamase domain protein compare
GFF3714 +0.6 1.8 Carbon monoxide oxidation accessory protein CoxG compare
GFF2201 +0.6 1.9 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
GFF2807 +0.6 1.6 Glycerol kinase (EC 2.7.1.30) compare
GFF5402 +0.6 1.9 Proline iminopeptidase (EC 3.4.11.5) compare
GFF1830 +0.6 2.3 Homoprotocatechuate degradative operon repressor compare
GFF1642 +0.6 1.2 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
GFF5241 +0.6 2.7 Glutathione S-transferase (EC 2.5.1.18) compare
GFF1242 +0.6 2.4 mRNA 3-end processing factor compare
GFF2602 +0.6 1.6 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
GFF973 +0.6 1.5 hypothetical protein compare
GFF2737 +0.6 2.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF1414 +0.6 1.8 Flagellar basal-body rod protein FlgC compare
GFF4355 +0.6 1.7 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF4010 +0.5 1.9 Homoserine/homoserine lactone efflux protein compare
GFF323 +0.5 2.2 Probable sulfite reductase compare
GFF458 +0.5 1.5 DGPFAETKE family protein compare
GFF5427 +0.5 1.3 hypothetical protein compare
GFF5643 +0.5 2.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF5156 +0.5 4.1 Type IV fimbrial biogenesis protein PilW compare
GFF2154 +0.5 2.5 possible transcriptional regulator, TetR family compare
GFF106 +0.5 3.9 FIG00931285: hypothetical protein compare
GFF5696 +0.5 1.0 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF1883 +0.5 4.3 hypothetical protein compare
GFF2736 +0.5 1.6 Glycine cleavage system transcriptional activator compare
GFF165 +0.5 1.5 FIG00932121: hypothetical protein compare
GFF2005 +0.5 1.6 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1430 +0.5 2.9 Flagellar biosynthesis protein FlhF compare
GFF3800 +0.5 1.2 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF3623 +0.5 1.0 Endoribonuclease L-PSP compare
GFF3391 +0.5 1.7 hypothetical protein compare
GFF2964 +0.5 0.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF3998 +0.5 1.1 Cobyric acid synthase (EC 6.3.5.10) compare
GFF642 +0.5 3.3 twitching motility protein PilG compare
GFF1905 +0.5 1.0 membrane protein, putative compare
GFF1956 +0.5 1.0 Inner membrane protein YqiK compare
GFF4338 +0.5 1.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
GFF152 +0.5 1.1 hypothetical protein compare
GFF2031 +0.5 2.2 hypothetical protein compare
GFF484 +0.5 0.9 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
GFF2571 +0.5 2.5 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake compare
GFF3843 +0.5 1.9 membrane protein compare
GFF2209 +0.5 0.9 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) compare
GFF1486 +0.5 3.8 hypothetical protein compare
GFF2405 +0.5 1.4 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
GFF4213 +0.5 3.4 FIG00932012: hypothetical protein compare
GFF519 +0.5 1.9 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF1274 +0.5 2.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF1293 +0.5 1.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF1609 +0.5 1.9 Regulator of competence-specific genes compare
GFF260 +0.5 0.9 Sulfur oxidation protein SoxY compare
GFF3900 +0.5 1.1 hypothetical protein compare
GFF3252 +0.5 3.1 Serine/threonine protein kinase (EC 2.7.11.1) compare
GFF86 +0.5 1.3 hypothetical protein compare
GFF5806 +0.5 0.8 tRNA-Ala-CGC compare
GFF1556 +0.5 1.3 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
GFF2961 +0.5 1.6 putative exported protein compare
GFF1821 +0.5 0.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF2958 +0.5 1.5 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5 compare
GFF1270 +0.5 3.4 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
GFF4400 +0.5 1.2 Glycosidases compare
GFF5028 +0.4 0.9 FMN reductase (EC 1.5.1.29) compare
GFF744 +0.4 2.0 Putative deoxyribonuclease YjjV compare
GFF5271 +0.4 1.6 hypothetical protein compare
GFF2591 +0.4 1.8 VfmD protein compare
GFF611 +0.4 1.4 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
GFF5466 +0.4 2.7 Tricarboxylate transport protein TctC compare
GFF2652 +0.4 1.8 Transcriptional regulator, MarR family compare
GFF3100 +0.4 1.6 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
GFF4727 +0.4 3.5 P-hydroxybenzoate hydroxylase (EC 1.14.13.2) compare
GFF2692 +0.4 1.7 hypothetical protein compare
GFF596 +0.4 3.3 Two-component sensor PilS compare
GFF4065 +0.4 1.2 RNA polymerase sigma factor for flagellar operon compare
GFF2758 +0.4 2.0 Adenylate cyclase (EC 4.6.1.1) compare
GFF1093 +0.4 0.9 Mobile element protein compare
GFF1041 +0.4 1.4 Aerotaxis sensor receptor protein compare
GFF2389 +0.4 0.7 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF2302 +0.4 1.7 hypothetical protein compare
GFF1924 +0.4 0.9 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
GFF1488 +0.4 1.3 Two-component system response regulator compare
GFF2244 +0.4 1.0 putative exported protein compare
GFF3007 +0.4 0.8 Polysaccharide deacetylase compare
GFF5158 +0.4 3.7 Type IV fimbrial biogenesis protein PilY1 compare
GFF2509 +0.4 2.5 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF2645 +0.4 1.9 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
GFF1155 +0.4 1.4 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF419 +0.4 1.5 hypothetical protein compare
GFF1647 +0.4 1.0 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF799 +0.4 2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3008 +0.4 2.8 FIG025233: SAM-dependent methyltransferases compare
GFF153 +0.4 1.3 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF1141 +0.4 1.9 Putative integrase compare
GFF5200 +0.4 1.8 putative exported protein compare
GFF3412 +0.4 1.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
GFF3727 +0.4 1.5 Membrane-associated phospholipid phosphatase compare
GFF4739 +0.4 1.6 hypothetical protein compare
GFF4847 +0.4 2.3 Arylesterase precursor (EC 3.1.1.2) compare
GFF4765 +0.4 1.6 glycosyl transferase, group 1 compare
GFF4641 +0.4 1.1 Cobalt-precorrin-6 synthase, anaerobic compare
GFF3738 +0.4 0.7 hypothetical protein compare
GFF2007 +0.4 1.6 hypothetical protein compare
GFF2595 +0.4 1.2 hypothetical protein compare
GFF185 +0.4 0.4 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
GFF3021 +0.4 2.9 Alkanesulfonates transport system permease protein compare
GFF3837 +0.4 1.2 putative inner membrane efflux protein compare
GFF418 +0.4 1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5221 +0.4 1.8 hypothetical protein compare
GFF3723 +0.4 1.1 putative exported protein compare
GFF3238 +0.4 1.2 HNS-like transcription regulator protein compare
GFF3254 +0.4 2.0 Ribonuclease PH (EC 2.7.7.56) compare
GFF5555 +0.4 1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
GFF2956 +0.4 2.7 L-lactate dehydrogenase (EC 1.1.2.3) compare
GFF1706 +0.4 0.6 YbaK/prolyl-tRNA synthetase associated region compare
GFF2296 +0.4 2.0 Transcriptional regulator, IclR family compare
GFF1525 +0.4 2.0 Benzoylformate decarboxylase (EC 4.1.1.7) compare
GFF1234 +0.4 1.6 Glyoxalase family protein compare
GFF2710 +0.4 1.2 Transcriptional regulator, LysR family compare
GFF5405 +0.4 0.9 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
GFF1543 +0.4 1.4 Beta-lactamase-like compare
GFF1410 +0.4 1.9 Flagellar basal-body rod protein FlgG compare
GFF2705 +0.4 0.8 hypothetical protein compare
GFF4981 +0.4 1.6 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit compare
GFF2998 +0.4 1.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF807 +0.4 1.3 Selenide,water dikinase (EC 2.7.9.3) compare
GFF3319 +0.4 1.9 S-formylglutathione hydrolase (EC 3.1.2.12) compare
GFF440 +0.4 1.3 Short chain dehydrogenase compare
GFF4072 +0.4 0.9 Flagellar basal-body rod protein FlgB compare
GFF873 +0.4 1.9 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF3024 +0.4 0.9 Glutamine amidotransferase, class-II compare
GFF5750 +0.4 1.1 Zinc ABC transporter, inner membrane permease protein ZnuB compare
GFF479 +0.4 0.7 Citronellol and citronellal dehydrogenase compare
GFF5018 +0.4 0.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_sugar7 in Hydrogenophaga sp. GW460-11-11-14-LB1

For carbon source Ying_sugar7 across organisms