Experiment set2S486 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_sugar7 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
GFF5768 -7.6 -7.4 Putative O-antigen biosynthesis protein precursor compare
GFF5497 -7.4 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3361 -7.3 -5.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3068 -7.1 -16.0 RNA polymerase sigma-54 factor RpoN compare
GFF1853 -6.9 -8.2 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF3324 -6.8 -8.0 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF1856 -6.7 -9.2 hypothetical protein compare
GFF1846 -6.7 -10.3 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF4731 -6.7 -10.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF5395 -6.7 -4.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF3326 -6.6 -6.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF1855 -6.6 -10.0 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF1851 -6.5 -16.3 hypothetical protein compare
GFF1861 -6.5 -13.2 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF1848 -6.4 -9.8 hypothetical protein compare
GFF1862 -6.4 -9.8 Probable glycosyltransferase compare
GFF1844 -6.4 -7.6 Aminotransferase compare
GFF5771 -6.3 -6.1 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF1854 -6.3 -6.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF5344 -6.2 -8.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF1843 -6.1 -7.3 hypothetical protein compare
GFF1859 -6.1 -12.4 CgeB family protein compare
GFF5343 -6.1 -10.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF3106 -6.1 -11.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3354 -6.0 -5.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF5239 -6.0 -9.1 Chorismate synthase (EC 4.2.3.5) compare
GFF3360 -6.0 -12.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF4292 -5.9 -8.6 Oxidoreductase probably involved in sulfite reduction compare
GFF1332 -5.9 -4.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF4893 -5.8 -4.0 Nitrogen regulation protein NR(I) compare
GFF1864 -5.7 -5.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF4147 -5.7 -8.7 Isocitrate lyase (EC 4.1.3.1) compare
GFF301 -5.7 -3.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF1858 -5.5 -9.7 glycosyl transferase family 2 compare
GFF4513 -5.5 -6.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF3107 -5.5 -5.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF1845 -5.4 -9.6 O-antigen export system, permease protein compare
GFF3040 -5.3 -5.2 Malate synthase G (EC 2.3.3.9) compare
GFF249 -5.3 -5.1 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF1842 -5.3 -24.6 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF1331 -5.2 -11.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF245 -5.2 -3.5 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF5566 -5.2 -3.5 FIG002207: Probable transmembrane protein compare
GFF1865 -5.1 -22.6 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF4892 -5.1 -11.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF2447 -5.1 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF1839 -5.0 -3.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF651 -5.0 -4.8 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF4293 -5.0 -14.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF3363 -5.0 -11.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3695 -4.9 -3.3 FIG003089: Probable transmembrane protein compare
GFF5509 -4.9 -4.7 Gluconate utilization system Gnt-I transcriptional repressor compare
GFF2763 -4.8 -3.3 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF248 -4.8 -3.3 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF2574 -4.8 -3.3 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF3888 -4.8 -3.3 Biopolymer transport protein ExbD/TolR compare
GFF5398 -4.7 -5.5 Nitrogen regulation protein NR(I) compare
GFF4300 -4.7 -9.4 N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF1228 -4.6 -3.2 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3355 -4.6 -3.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1882 -4.6 -5.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF1274 -4.6 -6.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3110 -4.6 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2806 -4.5 -3.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1379 -4.5 -19.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF3356 -4.5 -3.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3111 -4.5 -3.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF2498 -4.5 -13.5 Response regulator receiver:Transcriptional regulatory protein, C- terminal compare
GFF523 -4.4 -6.0 Dihydroorotase (EC 3.5.2.3) compare
GFF5340 -4.4 -3.0 Outer membrane protein A precursor compare
GFF1341 -4.4 -3.0 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF5772 -4.4 -3.0 Phosphomannomutase (EC 5.4.2.8) compare
GFF4290 -4.4 -14.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1841 -4.3 -25.3 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF2495 -4.3 -16.3 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF5766 -4.3 -2.9 PMID: 11481431 compare
GFF2641 -4.3 -9.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2615 -4.2 -5.6 Ferric uptake regulation protein FUR compare
GFF4289 -4.1 -16.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF2923 -4.1 -7.3 Cytochrome c-type biogenesis protein ResA compare
GFF3934 -4.0 -7.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4889 -4.0 -2.7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1916 -3.8 -27.4 Probable transmembrane protein compare
GFF590 -3.8 -3.7 Sugar kinases, ribokinase family compare
GFF581 -3.8 -13.4 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
GFF1354 -3.8 -2.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF1227 -3.8 -2.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF4107 -3.7 -23.4 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
GFF2573 -3.7 -9.7 Peptide deformylase (EC 3.5.1.88) compare
GFF1222 -3.6 -9.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF1787 -3.5 -10.9 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4211 -3.5 -7.4 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF4291 -3.4 -8.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF1350 -3.4 -3.3 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF4788 -3.4 -22.9 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF1767 -3.3 -3.1 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF1257 -3.2 -3.7 FAD/FMN-containing dehydrogenases compare
GFF1764 -3.2 -4.7 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF775 -3.2 -2.1 Cell division protein FtsK compare
GFF2027 -3.1 -8.9 hypothetical protein compare
GFF4535 -3.1 -3.6 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1294 -2.9 -6.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF5228 -2.9 -17.8 Transcriptional regulator, TetR family compare
GFF3018 -2.9 -12.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
GFF1788 -2.9 -10.7 Probable proline rich signal peptide protein compare
GFF5584 -2.6 -7.2 DNA polymerase I (EC 2.7.7.7) compare
GFF4042 -2.6 -7.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF5559 -2.6 -4.5 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF5420 -2.6 -8.8 FIG00443700: hypothetical protein compare
GFF550 -2.6 -3.8 C4-type zinc finger protein, DksA/TraR family compare
GFF5173 -2.6 -2.1 MotA/TolQ/ExbB proton channel family protein compare
GFF770 -2.5 -15.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF2931 -2.5 -14.2 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF3829 -2.5 -6.6 granule-associated protein compare
GFF1293 -2.5 -7.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF2507 -2.5 -6.4 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF5418 -2.4 -5.4 ABC transporter permease protein compare
GFF5461 -2.4 -3.2 Tyrosine recombinase XerD compare
GFF2512 -2.4 -6.8 Exported zinc metalloprotease YfgC precursor compare
GFF689 -2.4 -10.5 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF3687 -2.4 -4.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF5561 -2.4 -5.5 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF5396 -2.3 -3.7 amino acid ABC transporter, periplasmic substrate-binding protein compare
GFF688 -2.3 -9.6 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF2497 -2.3 -9.9 Sensor protein basS/pmrB (EC 2.7.3.-) compare
GFF2485 -2.2 -7.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF1847 -2.2 -14.0 hypothetical protein compare
GFF5742 -2.2 -4.0 Probable transmembrane protein compare
GFF3694 -2.2 -3.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF691 -2.2 -6.5 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF5415 -2.2 -7.8 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
GFF4925 -2.1 -12.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
GFF3420 -2.1 -7.1 Acetylornithine aminotransferase (EC 2.6.1.11) compare
GFF1376 -2.1 -14.8 Outer membrane porin protein 32 precursor; putative 3-hydroxyphenylpropionic acid porine compare
GFF3692 -2.0 -5.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF2894 -2.0 -3.2 Putative translation initiation inhibitor, yjgF family compare
GFF3374 -2.0 -6.0 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4098 -2.0 -2.1 Glutamate racemase (EC 5.1.1.3) compare
GFF767 -2.0 -3.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
GFF4243 -2.0 -5.5 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF2614 -2.0 -3.1 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF4785 -1.9 -14.0 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF709 -1.9 -3.2 Cysteine synthase B (EC 2.5.1.47) compare
GFF4795 -1.9 -3.6 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF5767 -1.8 -5.1 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF3252 -1.8 -8.5 Serine/threonine protein kinase (EC 2.7.11.1) compare
GFF4786 -1.8 -13.4 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF4534 -1.8 -5.4 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF4890 -1.8 -8.4 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4440 -1.8 -2.7 Conjugative transfer protein TrbL compare
GFF3686 -1.8 -4.0 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF4523 -1.7 -7.9 FIG000859: hypothetical protein YebC compare
GFF4924 -1.7 -5.8 PhbF compare
GFF4493 -1.7 -9.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
GFF3803 -1.7 -6.6 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
GFF4294 -1.7 -9.6 Putative sulfate permease compare
GFF1860 -1.7 -12.1 Radical SAM compare
GFF1613 -1.7 -1.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4856 -1.7 -8.3 HflK protein compare
GFF4962 -1.6 -3.7 Excinuclease ABC subunit B compare
GFF1733 -1.6 -10.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
GFF697 -1.5 -8.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF1666 -1.5 -2.8 Holliday junction DNA helicase RuvA compare
GFF2323 -1.5 -9.0 Transcriptional regulator, IclR family compare
GFF4855 -1.5 -6.9 HflC protein compare
GFF2367 -1.5 -5.9 hypothetical protein compare
GFF4797 -1.5 -10.8 Polyhydroxyalkanoic acid synthase compare
GFF4779 -1.5 -11.4 Intracellular PHB depolymerase (EC 3.1.1.-) compare
GFF693 -1.5 -2.7 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF652 -1.4 -2.6 Dihydroorotase (EC 3.5.2.3) compare
GFF3340 -1.4 -3.9 Sigma factor RpoE negative regulatory protein RseA compare
GFF328 -1.4 -5.2 Transmembrane regulator protein PrtR compare
GFF29 -1.4 -3.3 Transcriptional regulator, MarR family compare
GFF3341 -1.4 -7.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
GFF4527 -1.4 -4.5 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
GFF1760 -1.4 -11.7 Tricarboxylate transport membrane protein TctA compare
GFF5734 -1.4 -3.2 Ribosome small subunit-stimulated GTPase EngC compare
GFF1758 -1.4 -9.7 periplasmic sensor signal transduction histidine kinase compare
GFF5737 -1.4 -6.3 LSU ribosomal protein L19p compare
GFF5397 -1.4 -3.2 Cytochrome C550 (Soluble cytochrome C) compare
GFF1759 -1.4 -11.2 Tricarboxylate transport protein TctB compare
GFF4043 -1.4 -9.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF698 -1.4 -4.6 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF4333 -1.4 -8.7 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF57 -1.3 -1.5 hypothetical protein compare
GFF708 -1.3 -9.4 Nucleoside-diphosphate-sugar epimerases compare
GFF4861 -1.3 -4.5 Mlr7403 protein compare
GFF5110 -1.3 -6.1 Phytoene synthase (EC 2.5.1.32) compare
GFF1267 -1.3 -8.1 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF3531 -1.3 -9.9 ABC transporter compare
GFF1075 -1.3 -2.3 tRNA-Arg-CCT compare
GFF5732 -1.3 -5.7 macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides compare
GFF5153 -1.3 -6.7 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF1757 -1.3 -9.5 response regulator in two-component regulatory system with PhoQ compare
GFF2508 -1.2 -9.4 FIG00576366: hypothetical protein compare
GFF5407 -1.2 -3.9 Coenzyme PQQ synthesis protein E compare
GFF5315 -1.2 -3.9 hypothetical protein compare
GFF2715 -1.2 -4.8 rRNA small subunit methyltransferase I compare
GFF4888 -1.2 -6.8 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1324 -1.2 -7.9 Uncharacterized ABC transporter, permease component YrbE compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_sugar7 across organisms