Experiment set2S486 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

200 most important genes:

  gene name fitness t score description  
LU632_RS15245 purE -6.3 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
LU632_RS07865 purF -5.0 -11.7 amidophosphoribosyltransferase compare
LU632_RS15425 rpoE -5.0 -9.9 RNA polymerase sigma factor RpoE compare
LU632_RS23980 tatC -4.9 -9.7 Sec-independent protein translocase subunit TatC compare
LU632_RS08815 -4.8 -3.1 colanic acid biosynthesis glycosyltransferase WcaL compare
LU632_RS21755 -4.8 -11.1 adenylosuccinate synthase compare
LU632_RS08785 -4.7 -5.6 glycosyltransferase family 2 protein compare
LU632_RS17820 ndk -4.7 -2.7 nucleoside-diphosphate kinase compare
LU632_RS09955 pyrD -4.6 -6.3 quinone-dependent dihydroorotate dehydrogenase compare
LU632_RS06615 ptsI -4.6 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
LU632_RS21240 mlaE -4.4 -4.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LU632_RS08275 purM -4.4 -6.0 phosphoribosylformylglycinamidine cyclo-ligase compare
LU632_RS16110 sdhD -4.3 -7.8 succinate dehydrogenase membrane anchor subunit compare
LU632_RS02750 carB -4.3 -3.0 carbamoyl-phosphate synthase large subunit compare
LU632_RS20950 pyrB -4.3 -5.1 aspartate carbamoyltransferase compare
LU632_RS22810 -4.3 -9.1 aspartate aminotransferase family protein compare
LU632_RS16115 sdhC -4.3 -6.8 succinate dehydrogenase cytochrome b556 subunit compare
LU632_RS07775 aroC -4.2 -6.3 chorismate synthase compare
LU632_RS08925 hisA -4.2 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LU632_RS08790 -4.1 -5.7 EpsG family protein compare
LU632_RS08780 wzc -4.1 -7.9 tyrosine-protein kinase Wzc compare
LU632_RS10340 pyrC -4.1 -3.9 dihydroorotase compare
LU632_RS08775 -4.0 -5.5 protein tyrosine phosphatase compare
LU632_RS24155 -4.0 -1.9 class I adenylate cyclase compare
LU632_RS17975 purL -4.0 -11.8 phosphoribosylformylglycinamidine synthase compare
LU632_RS08820 -4.0 -2.8 lipopolysaccharide biosynthesis protein compare
LU632_RS04270 ulaD -3.8 -6.4 3-keto-L-gulonate-6-phosphate decarboxylase UlaD compare
LU632_RS16100 -3.8 -3.7 succinate dehydrogenase iron-sulfur subunit compare
LU632_RS02875 leuB -3.8 -10.3 3-isopropylmalate dehydrogenase compare
LU632_RS08930 hisH -3.8 -8.0 imidazole glycerol phosphate synthase subunit HisH compare
LU632_RS16105 sdhA -3.7 -8.3 succinate dehydrogenase flavoprotein subunit compare
LU632_RS19615 argC -3.7 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
LU632_RS21360 degS -3.7 -12.7 outer membrane-stress sensor serine endopeptidase DegS compare
LU632_RS02100 -3.7 -14.9 hemolysin family protein compare
LU632_RS12500 pyrF -3.7 -5.0 orotidine-5'-phosphate decarboxylase compare
LU632_RS02870 leuC -3.6 -13.0 3-isopropylmalate dehydratase large subunit compare
LU632_RS03310 -3.6 -13.3 sucrose-6-phosphate hydrolase compare
LU632_RS07995 nuoH -3.6 -3.2 NADH-quinone oxidoreductase subunit NuoH compare
LU632_RS08920 hisF -3.5 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
LU632_RS21875 gpsA -3.5 -11.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
LU632_RS19610 argB -3.5 -3.3 acetylglutamate kinase compare
LU632_RS01180 -3.5 -1.1 hypothetical protein compare
LU632_RS01430 -3.4 -1.4 hypothetical protein compare
LU632_RS08770 -3.4 -8.0 polysaccharide export protein compare
LU632_RS08800 -3.4 -1.7 glycosyltransferase compare
LU632_RS02755 carA -3.4 -7.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
LU632_RS19930 rseP -3.3 -4.6 sigma E protease regulator RseP compare
LU632_RS19665 ftsN -3.3 -3.2 cell division protein FtsN compare
LU632_RS15250 purK -3.3 -4.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
LU632_RS21225 mlaB -3.2 -4.8 lipid asymmetry maintenance protein MlaB compare
LU632_RS21235 mlaD -3.2 -7.3 outer membrane lipid asymmetry maintenance protein MlaD compare
LU632_RS22140 glnL -3.2 -11.3 nitrogen regulation protein NR(II) compare
LU632_RS08335 -3.2 -1.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LU632_RS16415 tatE -3.1 -0.7 twin-arginine translocase subunit TatE compare
LU632_RS21245 mlaF -3.1 -8.0 phospholipid ABC transporter ATP-binding protein MlaF compare
LU632_RS25495 -3.0 -1.5 type II toxin-antitoxin system MqsA family antitoxin compare
LU632_RS22015 pyrE -3.0 -2.1 orotate phosphoribosyltransferase compare
LU632_RS19275 ftsE -3.0 -7.0 cell division ATP-binding protein FtsE compare
LU632_RS22960 feoA -3.0 -0.7 ferrous iron transporter A compare
LU632_RS14835 plsX -3.0 -4.5 phosphate acyltransferase PlsX compare
LU632_RS09475 mntR -3.0 -2.3 manganese-binding transcriptional regulator MntR compare
LU632_RS18420 -3.0 -1.0 LysE family translocator compare
LU632_RS08935 hisB -2.9 -7.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LU632_RS20900 argF -2.9 -10.8 ornithine carbamoyltransferase compare
LU632_RS10270 -2.9 -2.2 glucan biosynthesis protein G compare
LU632_RS08000 nuoI -2.9 -3.6 NADH-quinone oxidoreductase subunit NuoI compare
LU632_RS01015 purD -2.9 -6.0 phosphoribosylamine--glycine ligase compare
LU632_RS22135 glnG -2.9 -7.1 nitrogen regulation protein NR(I) compare
LU632_RS04205 -2.8 -0.9 hypothetical protein compare
LU632_RS01085 -2.8 -3.8 class I SAM-dependent methyltransferase compare
LU632_RS19600 argH -2.8 -9.0 argininosuccinate lyase compare
LU632_RS02865 leuD -2.8 -5.2 3-isopropylmalate dehydratase small subunit compare
LU632_RS19620 argE -2.8 -3.8 acetylornithine deacetylase compare
LU632_RS24405 -2.8 -11.9 branched-chain amino acid transaminase compare
LU632_RS09745 -2.7 -1.2 DNA translocase FtsK 4TM domain-containing protein compare
LU632_RS04250 yiaK -2.7 -4.4 3-dehydro-L-gulonate 2-dehydrogenase compare
LU632_RS17615 -2.7 -3.2 YejL family protein compare
LU632_RS19585 sthA -2.7 -12.4 Si-specific NAD(P)(+) transhydrogenase compare
LU632_RS21955 -2.6 -1.4 glycosyltransferase family 4 protein compare
LU632_RS02070 hflC -2.6 -1.7 protease modulator HflC compare
LU632_RS07300 mlaA -2.6 -8.7 phospholipid-binding lipoprotein MlaA compare
LU632_RS02880 leuA -2.6 -9.3 2-isopropylmalate synthase compare
LU632_RS24385 ilvC -2.5 -6.7 ketol-acid reductoisomerase compare
LU632_RS14010 ldcA -2.5 -4.1 muramoyltetrapeptide carboxypeptidase compare
LU632_RS07985 nuoF -2.5 -5.7 NADH-quinone oxidoreductase subunit NuoF compare
LU632_RS16555 -2.5 -2.0 hypothetical protein compare
LU632_RS21625 -2.4 -2.3 IS6 family transposase compare
LU632_RS07965 -2.4 -5.2 NADH-quinone oxidoreductase subunit A compare
LU632_RS23360 -2.4 -4.5 Sua5/YciO/YrdC/YwlC family protein compare
LU632_RS20175 -2.4 -1.2 hypothetical protein compare
LU632_RS22865 aroB -2.4 -2.3 3-dehydroquinate synthase compare
LU632_RS02065 hflK -2.4 -1.6 FtsH protease activity modulator HflK compare
LU632_RS22090 -2.4 -1.3 pyocin activator PrtN family protein compare
LU632_RS02910 rsmH -2.4 -7.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
LU632_RS01020 purH -2.4 -1.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LU632_RS05320 -2.3 -1.0 hypothetical protein compare
LU632_RS20695 bacA -2.3 -3.7 undecaprenyl-diphosphate phosphatase compare
LU632_RS19605 -2.3 -7.2 argininosuccinate synthase compare
LU632_RS08945 hisD -2.3 -6.0 histidinol dehydrogenase compare
LU632_RS13085 dsbB -2.3 -4.8 disulfide bond formation protein DsbB compare
LU632_RS08020 nuoM -2.2 -5.3 NADH-quinone oxidoreductase subunit M compare
LU632_RS06520 -2.2 -2.2 zinc ABC transporter substrate-binding protein compare
LU632_RS02085 cysQ -2.2 -1.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
LU632_RS21230 mlaC -2.2 -6.1 phospholipid-binding protein MlaC compare
LU632_RS07975 nuoC -2.2 -9.9 NADH-quinone oxidoreductase subunit C/D compare
LU632_RS08005 nuoJ -2.2 -5.1 NADH-quinone oxidoreductase subunit J compare
LU632_RS04280 araD -2.2 -10.1 L-ribulose-5-phosphate 4-epimerase compare
LU632_RS24400 ilvD -2.2 -8.1 dihydroxy-acid dehydratase compare
LU632_RS02140 -2.2 -2.8 ribosome-associated protein compare
LU632_RS05960 sdhE -2.2 -3.7 FAD assembly factor SdhE compare
LU632_RS12925 rssB -2.1 -1.1 two-component system response regulator RssB compare
LU632_RS19270 ftsX -2.1 -10.8 permease-like cell division protein FtsX compare
LU632_RS09245 -2.1 -4.6 L,D-transpeptidase family protein compare
LU632_RS02615 thrB -2.1 -2.0 homoserine kinase compare
LU632_RS16250 nagA -2.1 -6.5 N-acetylglucosamine-6-phosphate deacetylase compare
LU632_RS03305 -2.1 -6.5 sucrose-specific PTS transporter subunit IIBC compare
LU632_RS15445 tyrA -2.1 -8.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
LU632_RS07990 nuoG -2.0 -6.3 NADH-quinone oxidoreductase subunit NuoG compare
LU632_RS08880 -2.0 -2.8 ABC transporter permease compare
LU632_RS16090 odhB -2.0 -1.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
LU632_RS18500 tgt -2.0 -3.9 tRNA guanosine(34) transglycosylase Tgt compare
LU632_RS21880 secB -2.0 -2.9 protein-export chaperone SecB compare
LU632_RS08025 nuoN -2.0 -4.8 NADH-quinone oxidoreductase subunit NuoN compare
LU632_RS24840 kup -2.0 -9.3 low affinity potassium transporter Kup compare
LU632_RS01320 crcB -2.0 -1.7 fluoride efflux transporter CrcB compare
LU632_RS21365 mdh -2.0 -4.1 malate dehydrogenase compare
LU632_RS16485 arnA -2.0 -8.9 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
LU632_RS08915 hisIE -1.9 -3.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
LU632_RS11790 -1.9 -1.3 DUF2313 domain-containing protein compare
LU632_RS14915 -1.9 -1.5 DDE-type integrase/transposase/recombinase compare
LU632_RS09635 -1.9 -1.7 YbjN domain-containing protein compare
LU632_RS08015 nuoL -1.9 -8.6 NADH-quinone oxidoreductase subunit L compare
LU632_RS19285 rsmD -1.9 -1.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
LU632_RS05510 speA -1.9 -1.7 biosynthetic arginine decarboxylase compare
LU632_RS22935 envZ -1.9 -5.9 two-component system sensor histidine kinase EnvZ compare
LU632_RS06885 -1.9 -1.5 Phage antitermination protein q compare
LU632_RS15415 rseB -1.9 -3.3 sigma-E factor regulatory protein RseB compare
LU632_RS12910 -1.9 -2.1 NAD-dependent epimerase compare
LU632_RS22445 aroE -1.9 -3.6 shikimate dehydrogenase compare
LU632_RS08940 hisC -1.8 -6.4 histidinol-phosphate transaminase compare
LU632_RS07970 -1.8 -6.5 NADH-quinone oxidoreductase subunit B compare
LU632_RS22150 typA -1.8 -1.2 ribosome-dependent GTPase TypA compare
LU632_RS01160 gpt -1.8 -1.2 xanthine phosphoribosyltransferase compare
LU632_RS22945 -1.8 -1.1 hypothetical protein compare
LU632_RS09915 ompC -1.8 -2.1 porin OmpC compare
LU632_RS09795 aroA -1.8 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
LU632_RS03300 -1.8 -8.2 carbohydrate porin compare
LU632_RS23985 tatB -1.7 -2.4 Sec-independent protein translocase protein TatB compare
LU632_RS19450 pitA -1.7 -2.3 inorganic phosphate transporter PitA compare
LU632_RS11420 -1.7 -1.8 FNR family transcription factor compare
LU632_RS08350 -1.7 -2.3 YpfN family protein compare
LU632_RS18475 -1.7 -2.0 peroxiredoxin C compare
LU632_RS08950 hisG -1.7 -6.2 ATP phosphoribosyltransferase compare
LU632_RS04780 -1.7 -0.7 replication initiation protein compare
LU632_RS08805 -1.7 -9.1 phage tailspike protein compare
LU632_RS22940 ompR -1.7 -4.1 two-component system response regulator OmpR compare
LU632_RS06210 argA -1.7 -6.3 amino-acid N-acetyltransferase compare
LU632_RS11560 pspA -1.7 -2.0 phage shock protein PspA compare
LU632_RS24260 trxA -1.7 -2.6 thioredoxin TrxA compare
LU632_RS00220 -1.7 -5.8 family 10 glycosylhydrolase compare
LU632_RS15640 -1.7 -1.6 helix-turn-helix domain-containing protein compare
LU632_RS13110 -1.7 -1.9 YcgL domain-containing protein compare
LU632_RS24210 wzyE -1.6 -8.8 ECA oligosaccharide polymerase compare
LU632_RS14735 -1.6 -3.7 glycine zipper 2TM domain-containing protein compare
LU632_RS20960 ridA -1.6 -2.6 2-iminobutanoate/2-iminopropanoate deaminase compare
LU632_RS17785 bamB -1.6 -4.2 outer membrane protein assembly factor BamB compare
LU632_RS24205 rffM -1.6 -6.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
LU632_RS16120 -1.6 -7.3 citrate synthase compare
LU632_RS24225 rffA -1.6 -9.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
LU632_RS08885 -1.6 -3.9 ABC transporter ATP-binding protein compare
LU632_RS02210 yraP -1.6 -4.4 divisome-associated lipoprotein YraP compare
LU632_RS17320 fruK -1.6 -2.8 1-phosphofructokinase compare
LU632_RS06040 lysA -1.6 -5.9 diaminopimelate decarboxylase compare
LU632_RS23955 fadA -1.6 -1.9 acetyl-CoA C-acyltransferase compare
LU632_RS17830 -1.6 -0.9 MgtC/SapB family protein compare
LU632_RS24270 gppA -1.6 -0.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
LU632_RS12940 purU -1.6 -8.3 formyltetrahydrofolate deformylase compare
LU632_RS21085 secG -1.6 -1.1 preprotein translocase subunit SecG compare
LU632_RS22020 rph -1.5 -4.9 ribonuclease PH compare
LU632_RS16990 bamE -1.5 -1.9 outer membrane protein assembly factor BamE compare
LU632_RS20545 metC -1.5 -7.4 cystathionine beta-lyase compare
LU632_RS24890 pstA -1.5 -1.3 phosphate ABC transporter permease PstA compare
LU632_RS13115 minC -1.5 -4.7 septum site-determining protein MinC compare
LU632_RS04275 -1.5 -4.9 L-ribulose-5-phosphate 3-epimerase compare
LU632_RS21895 envC -1.5 -5.7 murein hydrolase activator EnvC compare
LU632_RS25725 -1.5 -1.2 ParA family protein compare
LU632_RS14145 -1.5 -1.5 integrase core domain-containing protein compare
LU632_RS11010 -1.5 -4.8 3-deoxy-7-phosphoheptulonate synthase compare
LU632_RS24250 wecA -1.5 -9.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
LU632_RS16480 -1.5 -3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
LU632_RS22285 -1.5 -0.9 recombinase family protein compare
LU632_RS02635 mog -1.5 -2.5 molybdopterin adenylyltransferase compare
LU632_RS09700 clpS -1.5 -2.9 ATP-dependent Clp protease adapter ClpS compare
LU632_RS22410 metA -1.5 -4.9 homoserine O-succinyltransferase compare
LU632_RS08190 apbE -1.4 -1.6 FAD:protein FMN transferase ApbE compare
LU632_RS13950 ychF -1.4 -2.6 redox-regulated ATPase YchF compare
LU632_RS13120 minD -1.4 -4.9 septum site-determining protein MinD compare
LU632_RS09705 clpA -1.4 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LU632_RS03210 -1.4 -1.8 EscI/YscI/HrpB family type III secretion system inner rod protein compare
LU632_RS14570 -1.4 -1.9 NUDIX hydrolase compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments