Experiment set2S486 for Erwinia tracheiphila SCR3

Compare to:

Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

200 most detrimental genes:

  gene name fitness t score description  
LU632_RS20620 cpdA +7.8 26.8 3',5'-cyclic-AMP phosphodiesterase compare
LU632_RS10510 rcsA +6.5 9.0 transcriptional regulator RcsA compare
LU632_RS25570 +6.1 8.1 ribbon-helix-helix domain-containing protein compare
LU632_RS02465 +5.7 4.8 IS256 family transposase compare
LU632_RS08170 rcsC +5.5 38.3 two-component system sensor histidine kinase RcsC compare
LU632_RS08180 rcsD +5.5 29.7 phosphotransferase RcsD compare
LU632_RS00745 +5.3 4.9 hypothetical protein compare
LU632_RS00835 +5.1 12.4 DeoR/GlpR family DNA-binding transcription regulator compare
LU632_RS03330 +4.3 20.0 LacI family DNA-binding transcriptional regulator compare
LU632_RS10450 +3.9 7.7 LysR family transcriptional regulator compare
LU632_RS13340 +3.6 2.6 hypothetical protein compare
LU632_RS20625 +3.6 4.4 DUF1249 family protein compare
LU632_RS12635 +3.6 2.0 FMN-dependent NADH-azoreductase compare
LU632_RS06480 rpoS +3.4 17.0 RNA polymerase sigma factor RpoS compare
LU632_RS19580 fabR +2.7 4.3 HTH-type transcriptional repressor FabR compare
LU632_RS08765 wbaP +2.6 9.1 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
LU632_RS00115 +2.6 12.1 acyltransferase compare
LU632_RS03200 +2.6 5.6 sigma-54 dependent transcriptional regulator compare
LU632_RS11100 +2.5 2.5 integrase core domain-containing protein compare
LU632_RS22790 +2.5 10.3 phosphoribulokinase compare
LU632_RS03325 +2.4 8.0 hypothetical protein compare
LU632_RS13210 cspE +2.3 4.1 transcription antiterminator/RNA stability regulator CspE compare
LU632_RS05115 +2.3 1.1 hypothetical protein compare
LU632_RS24150 +2.3 1.8 lipoprotein compare
LU632_RS03185 +2.3 3.3 sigma-70 family RNA polymerase sigma factor compare
LU632_RS12350 +2.2 1.3 adenosine deaminase compare
LU632_RS12430 +2.2 1.8 DUF3164 family protein compare
LU632_RS01740 +2.2 4.2 hypothetical protein compare
LU632_RS08570 metG +2.2 1.1 methionine--tRNA ligase compare
LU632_RS23785 +2.1 4.3 hypothetical protein compare
LU632_RS08590 thiD +2.1 2.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
LU632_RS00490 +2.1 2.3 EscR/YscR/HrcR family type III secretion system export apparatus protein compare
LU632_RS10745 sirB1 +2.1 1.2 invasion regulator SirB1 compare
LU632_RS21515 fis +2.1 7.4 DNA-binding transcriptional regulator Fis compare
LU632_RS03565 +2.0 2.0 GPO family capsid scaffolding protein compare
LU632_RS13285 +2.0 1.2 phage integrase compare
LU632_RS10180 +2.0 5.0 autoinducer synthase compare
LU632_RS22170 fabY +2.0 7.3 fatty acid biosynthesis protein FabY compare
LU632_RS08825 galF +2.0 6.9 UTP--glucose-1-phosphate uridylyltransferase GalF compare
LU632_RS14660 +1.9 4.1 IS5 family transposase compare
LU632_RS04465 +1.9 3.1 helix-turn-helix domain-containing protein compare
LU632_RS21350 +1.9 3.5 DUF1043 family protein compare
LU632_RS20100 panB +1.9 2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
LU632_RS08080 +1.9 1.5 LysR family transcriptional regulator compare
LU632_RS06150 +1.8 3.2 TauD/TfdA family dioxygenase compare
LU632_RS20315 +1.8 2.8 hypothetical protein compare
LU632_RS13255 proQ +1.8 3.5 RNA chaperone ProQ compare
LU632_RS05385 +1.7 3.8 IS6 family transposase compare
LU632_RS17485 +1.7 1.5 hypothetical protein compare
LU632_RS06380 +1.7 2.6 hypothetical protein compare
LU632_RS09155 +1.7 5.6 ATP-binding cassette domain-containing protein compare
LU632_RS06145 +1.7 8.0 sulfotransferase compare
LU632_RS20090 pcnB +1.7 4.0 polynucleotide adenylyltransferase PcnB compare
LU632_RS12740 +1.7 10.0 glycosyltransferase compare
LU632_RS03465 +1.7 2.4 hypothetical protein compare
LU632_RS14040 +1.6 2.1 transposase compare
LU632_RS18540 +1.6 2.4 DcrB-related protein compare
LU632_RS00360 +1.6 3.6 Tn3 family transposase compare
LU632_RS03190 +1.6 5.7 PAS domain-containing sensor histidine kinase compare
LU632_RS23035 +1.6 1.1 helix-turn-helix domain-containing protein compare
LU632_RS13610 +1.6 2.8 glutamine amidotransferase compare
LU632_RS22245 +1.6 4.8 hypothetical protein compare
LU632_RS06470 +1.5 3.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LU632_RS02735 apaG +1.5 3.6 Co2+/Mg2+ efflux protein ApaG compare
LU632_RS21510 dusB +1.5 5.2 tRNA dihydrouridine synthase DusB compare
LU632_RS11820 +1.5 3.1 hypothetical protein compare
LU632_RS09410 +1.5 2.6 flavin reductase compare
LU632_RS16210 +1.5 2.9 hypothetical protein compare
LU632_RS03770 +1.5 2.3 hypothetical protein compare
LU632_RS01790 +1.5 1.2 hypothetical protein compare
LU632_RS01070 +1.5 7.1 endonuclease/exonuclease/phosphatase family protein compare
LU632_RS16050 ybgC +1.5 2.1 tol-pal system-associated acyl-CoA thioesterase compare
LU632_RS19705 glpK +1.5 3.4 glycerol kinase GlpK compare
LU632_RS21750 rnr +1.4 7.1 ribonuclease R compare
LU632_RS00855 +1.4 1.9 helix-turn-helix domain-containing protein compare
LU632_RS21055 rbfA +1.4 1.5 30S ribosome-binding factor RbfA compare
LU632_RS22715 fkpA +1.4 5.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LU632_RS05130 +1.4 1.2 TIGR03750 family conjugal transfer protein compare
LU632_RS13480 cutC +1.4 3.7 copper homeostasis protein CutC compare
LU632_RS04710 +1.4 1.0 IS110 family transposase compare
LU632_RS06110 ptsP +1.4 8.0 phosphoenolpyruvate--protein phosphotransferase compare
LU632_RS06770 +1.4 2.4 hypothetical protein compare
LU632_RS21120 +1.4 2.4 tyrosine-type recombinase/integrase compare
LU632_RS17240 +1.4 2.0 hypothetical protein compare
LU632_RS03295 +1.4 7.8 aminoimidazole riboside kinase compare
LU632_RS11545 pspD +1.4 2.2 phage shock protein PspD compare
LU632_RS18970 +1.4 1.1 YaiA family protein compare
LU632_RS10140 wrbA +1.4 2.3 NAD(P)H:quinone oxidoreductase compare
LU632_RS22200 spoT +1.4 2.4 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
LU632_RS21500 prmA +1.4 0.8 50S ribosomal protein L11 methyltransferase compare
LU632_RS13130 rnd +1.4 3.3 ribonuclease D compare
LU632_RS05395 +1.3 2.7 TetR/AcrR family transcriptional regulator compare
LU632_RS06965 +1.3 3.0 ERF family protein compare
LU632_RS11625 +1.3 2.2 antibiotic biosynthesis monooxygenase compare
LU632_RS08240 +1.3 1.7 YfgG family protein compare
LU632_RS11890 +1.3 2.5 DUF3164 family protein compare
LU632_RS10170 +1.3 2.0 autoinducer binding domain-containing protein compare
LU632_RS08060 +1.3 0.7 phage protease compare
LU632_RS10990 +1.3 6.8 sensor domain-containing phosphodiesterase compare
LU632_RS10690 +1.3 1.6 hypothetical protein compare
LU632_RS25250 gspI +1.3 2.6 type II secretion system minor pseudopilin GspI compare
LU632_RS15635 +1.3 4.6 regulatory phage cox family protein compare
LU632_RS06555 +1.3 2.2 IS110 family transposase compare
LU632_RS22970 +1.3 3.1 DUF1471 domain-containing protein compare
LU632_RS07315 +1.3 2.5 3-ketoacyl-CoA thiolase compare
LU632_RS03195 +1.3 4.6 response regulator transcription factor compare
LU632_RS19460 uspA +1.3 2.3 universal stress protein UspA compare
LU632_RS05565 +1.3 1.8 hypothetical protein compare
LU632_RS08425 +1.3 2.7 Rpn family recombination-promoting nuclease/putative transposase compare
LU632_RS02730 rsmA +1.3 2.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LU632_RS16725 +1.3 1.7 hypothetical protein compare
LU632_RS12200 +1.2 1.8 excisionase family protein compare
LU632_RS22165 dtd +1.2 2.0 D-aminoacyl-tRNA deacylase compare
LU632_RS25800 traL +1.2 1.8 type IV conjugative transfer system protein TraL compare
LU632_RS19360 +1.2 1.6 hypothetical protein compare
LU632_RS07705 +1.2 1.6 hypothetical protein compare
LU632_RS25375 +1.2 1.6 hypothetical protein compare
LU632_RS10320 solA +1.2 3.4 N-methyl-L-tryptophan oxidase compare
LU632_RS19020 +1.2 3.0 MarC family NAAT transporter compare
LU632_RS15085 +1.2 2.9 hypothetical protein compare
LU632_RS07570 +1.2 1.4 hypothetical protein compare
LU632_RS00135 +1.2 1.1 YibL family ribosome-associated protein compare
LU632_RS02025 +1.2 1.9 hypothetical protein compare
LU632_RS23080 +1.2 1.7 hypothetical protein compare
LU632_RS22050 +1.2 5.7 YicC family protein compare
LU632_RS04650 +1.2 1.8 hypothetical protein compare
LU632_RS07260 +1.2 1.1 hypothetical protein compare
LU632_RS12855 +1.2 1.5 HI1450 family dsDNA-mimic protein compare
LU632_RS09735 +1.1 2.8 hypothetical protein compare
LU632_RS00435 sctF +1.1 0.7 type III secretion system needle filament subunit SctF compare
LU632_RS12325 +1.1 0.9 H-NS histone family protein compare
LU632_RS20705 plsY +1.1 1.6 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
LU632_RS08890 gndA +1.1 2.5 NADP-dependent phosphogluconate dehydrogenase compare
LU632_RS16755 +1.1 1.8 transposase compare
LU632_RS08455 +1.1 2.3 DUF496 family protein compare
LU632_RS21300 npr +1.1 2.8 PTS phosphocarrier protein NPr compare
LU632_RS21315 gltB +1.1 7.5 glutamate synthase large subunit compare
LU632_RS19365 +1.1 1.9 hypothetical protein compare
LU632_RS20420 +1.1 1.4 DNA-binding protein compare
LU632_RS06155 +1.1 2.3 SDR family oxidoreductase compare
LU632_RS20260 +1.1 0.9 DUF4113 domain-containing protein compare
LU632_RS17460 +1.1 2.1 cell wall-binding protein compare
LU632_RS11355 +1.1 0.6 hypothetical protein compare
LU632_RS25615 +1.0 1.1 hypothetical protein compare
LU632_RS19015 cspA +1.0 1.1 RNA chaperone/antiterminator CspA compare
LU632_RS19310 +1.0 1.4 hypothetical protein compare
LU632_RS03345 +1.0 2.2 iron ABC transporter substrate-binding protein compare
LU632_RS19130 +1.0 2.7 transposase compare
LU632_RS23735 +1.0 2.7 hypothetical protein compare
LU632_RS14670 +1.0 1.8 host specificity protein compare
LU632_RS07310 +1.0 1.7 YfcZ/YiiS family protein compare
LU632_RS24700 asnC +1.0 1.9 transcriptional regulator AsnC compare
LU632_RS14335 +1.0 2.7 hypothetical protein compare
LU632_RS25000 +1.0 1.4 DUF3164 family protein compare
LU632_RS06440 +1.0 2.6 DUF3561 family protein compare
LU632_RS14285 +1.0 1.5 hypothetical protein compare
LU632_RS21730 yjfP +1.0 1.6 esterase compare
LU632_RS14880 +1.0 2.8 MFS transporter compare
LU632_RS23180 +1.0 1.7 AAA family ATPase compare
LU632_RS04490 +1.0 2.1 hypothetical protein compare
LU632_RS15950 +1.0 2.0 cation diffusion facilitator family transporter compare
LU632_RS16525 +1.0 2.3 iron-containing alcohol dehydrogenase compare
LU632_RS13330 +1.0 1.3 hypothetical protein compare
LU632_RS05020 +1.0 1.2 TIGR03746 family integrating conjugative element protein compare
LU632_RS04830 +1.0 2.1 integrative conjugative element protein, RAQPRD family compare
LU632_RS21320 +1.0 5.1 glutamate synthase small subunit compare
LU632_RS01175 +1.0 1.7 porin compare
LU632_RS03590 +1.0 1.7 phage holin family protein compare
LU632_RS23520 +1.0 2.7 FAD-dependent oxidoreductase compare
LU632_RS06530 +1.0 4.1 NupC/NupG family nucleoside CNT transporter compare
LU632_RS15080 +1.0 1.7 antitermination protein Q compare
LU632_RS18430 +1.0 4.0 LysR substrate-binding domain-containing protein compare
LU632_RS06860 +1.0 0.9 hypothetical protein compare
LU632_RS08565 +1.0 1.9 CidA/LrgA family protein compare
LU632_RS16675 +1.0 2.0 hypothetical protein compare
LU632_RS00200 +1.0 1.9 helix-turn-helix domain-containing protein compare
LU632_RS07050 +1.0 1.9 DNA cytosine methyltransferase compare
LU632_RS21535 +1.0 1.1 DUF1493 family protein compare
LU632_RS09585 +1.0 1.0 hypothetical protein compare
LU632_RS01200 +1.0 1.8 HNH endonuclease compare
LU632_RS14220 +0.9 1.2 ORF6N domain-containing protein compare
LU632_RS01170 crl +0.9 3.5 sigma factor-binding protein Crl compare
LU632_RS06355 +0.9 1.1 hypothetical protein compare
LU632_RS02190 +0.9 1.6 DgaE family pyridoxal phosphate-dependent ammonia lyase compare
LU632_RS07125 +0.9 1.7 scaffolding protein compare
LU632_RS24085 rhtB +0.9 2.0 homoserine/homoserine lactone efflux protein compare
LU632_RS21575 +0.9 0.8 Rpn family recombination-promoting nuclease/putative transposase compare
LU632_RS10545 fliL +0.9 1.7 flagellar basal body-associated protein FliL compare
LU632_RS04110 +0.9 3.1 DUF945 domain-containing protein compare
LU632_RS01875 +0.9 1.7 DUF4156 domain-containing protein compare
LU632_RS04400 +0.9 1.7 recombinase family protein compare
LU632_RS02890 ilvN +0.9 1.6 acetolactate synthase small subunit compare
LU632_RS11235 +0.9 1.1 DUF1289 domain-containing protein compare
LU632_RS18895 +0.9 1.9 hypothetical protein compare
LU632_RS20330 +0.9 1.7 IS6 family transposase compare
LU632_RS13555 cheW +0.9 2.8 chemotaxis protein CheW compare
LU632_RS01905 frdD +0.9 1.0 fumarate reductase subunit FrdD compare
LU632_RS11045 +0.9 2.8 hotdog fold thioesterase compare
LU632_RS10025 yccS +0.9 3.2 YccS family putative transporter compare
LU632_RS03515 +0.9 1.1 TraR/DksA family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Erwinia tracheiphila SCR3 in in planta experiments