Experiment set2S483 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_OrganicAcid7 rep A; time point 3

200 most detrimental genes:

  gene name fitness t score description  
GFF4847 +3.8 1.3 Arylesterase precursor (EC 3.1.1.2) compare
GFF2884 +2.7 1.9 Urea ABC transporter, ATPase protein UrtE compare
GFF2142 +1.6 5.7 hypothetical protein compare
GFF1285 +1.6 1.8 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) compare
GFF731 +1.5 2.1 putative exported protein compare
GFF5435 +1.4 2.4 ABC-type tungstate transport system, ATP-binding protein compare
GFF600 +1.4 2.1 Phosphohydrolase (MutT/nudix family protein) compare
GFF2462 +1.4 1.8 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF5758 +1.4 1.9 Transcriptional regulators, LysR family compare
GFF5822 +1.3 1.4 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
GFF2974 +1.1 2.7 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF4399 +1.0 1.7 Chromosome (plasmid) partitioning protein ParA compare
GFF2537 +1.0 6.1 Two-component response regulator compare
GFF86 +0.9 2.0 hypothetical protein compare
GFF5017 +0.9 2.0 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF2854 +0.9 2.0 Probable hydrolase compare
GFF5489 +0.9 1.8 TPR domain protein, putative component of TonB system compare
GFF1706 +0.9 1.3 YbaK/prolyl-tRNA synthetase associated region compare
GFF2536 +0.9 4.6 two-component hybrid sensor and regulator compare
GFF3174 +0.9 1.5 response regulator, NarL-family compare
GFF2692 +0.9 3.4 hypothetical protein compare
GFF171 +0.9 2.6 hypothetical protein compare
GFF3027 +0.9 2.9 Tricarboxylate transport transcriptional regulator TctD compare
GFF831 +0.8 3.8 Heat-inducible transcription repressor HrcA compare
GFF4641 +0.8 1.6 Cobalt-precorrin-6 synthase, anaerobic compare
GFF5288 +0.8 2.9 Phage DNA transfer protein compare
GFF4005 +0.8 1.3 hypothetical protein compare
GFF2867 +0.8 1.6 hypothetical protein compare
GFF1542 +0.8 2.0 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF479 +0.8 1.4 Citronellol and citronellal dehydrogenase compare
GFF419 +0.8 2.1 hypothetical protein compare
GFF4065 +0.8 2.3 RNA polymerase sigma factor for flagellar operon compare
GFF1129 +0.8 1.7 Heavy metal RND efflux outer membrane protein, CzcC family compare
GFF4473 +0.8 1.0 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF3853 +0.8 1.4 DNA-binding protein HU-beta compare
GFF1610 +0.8 1.2 hypothetical protein compare
GFF4026 +0.8 1.7 Cytosine deaminase (EC 3.5.4.1) compare
GFF3619 +0.7 2.3 Tricarboxylate transport protein TctC compare
GFF2713 +0.7 1.5 Aminopeptidase Y (Arg, Lys, Leu preference) (EC 3.4.11.15) compare
GFF802 +0.7 3.3 NnrU family protein, required for expression of nitric oxide and nitrite reductases (Nir and Nor) compare
GFF1937 +0.7 1.0 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) compare
GFF1954 +0.7 2.4 hypothetical protein compare
GFF3200 +0.7 1.7 hypothetical protein compare
GFF3738 +0.7 0.9 hypothetical protein compare
GFF2958 +0.7 1.8 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5 compare
GFF2966 +0.7 2.8 putative periplasmic protein kinase ArgK and related GTPases of G3E family compare
GFF1217 +0.7 2.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF5750 +0.7 1.9 Zinc ABC transporter, inner membrane permease protein ZnuB compare
GFF1446 +0.7 1.9 Flagellin protein FlaA compare
GFF4338 +0.7 2.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
GFF3270 +0.7 1.6 Two-component response regulator compare
GFF1824 +0.7 2.2 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
GFF209 +0.7 2.4 Hypothetical protein with Rieske (2Fe-2S) region compare
GFF539 +0.7 2.2 Transcriptional regulator, GntR family compare
GFF2591 +0.7 2.7 VfmD protein compare
GFF2299 +0.7 2.1 hypothetical protein compare
GFF2698 +0.6 1.1 response regulator compare
GFF2579 +0.6 2.4 Tricarboxylate transport sensor protein TctE compare
GFF2972 +0.6 2.7 TRAP-type C4-dicarboxylate transport system, large permease component compare
GFF4765 +0.6 2.1 glycosyl transferase, group 1 compare
GFF1111 +0.6 1.1 Arsenate reductase (EC 1.20.4.1) compare
GFF748 +0.6 1.2 Tricarboxylate transport protein TctB compare
GFF3198 +0.6 1.5 hypothetical protein compare
GFF727 +0.6 1.8 hypothetical protein compare
GFF3449 +0.6 1.5 Conjugative transfer protein TrbJ compare
GFF1578 +0.6 2.7 Methylisocitrate lyase (EC 4.1.3.30) compare
GFF789 +0.6 2.7 hypothetical protein compare
GFF1606 +0.6 1.4 Transcriptional regulator, LysR family compare
GFF2559 +0.6 1.3 hypothetical protein compare
GFF3780 +0.6 1.5 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF801 +0.6 3.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4835 +0.6 2.0 hypothetical protein compare
GFF4180 +0.6 1.4 Conjugative transfer protein TrbJ compare
GFF3056 +0.6 1.3 MmgE/PrpD family protein compare
GFF5394 +0.6 2.8 FIG01210906: hypothetical protein compare
GFF3723 +0.6 1.7 putative exported protein compare
GFF1780 +0.6 1.3 hypothetical protein compare
GFF1429 +0.6 2.2 hypothetical protein compare
GFF5378 +0.6 3.7 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
GFF5628 +0.6 0.8 Transcriptional regulator, LysR family compare
GFF5380 +0.6 2.0 Transcriptional activator of acetoin/glycerol metabolism compare
GFF2680 +0.6 1.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
GFF5241 +0.6 2.6 Glutathione S-transferase (EC 2.5.1.18) compare
GFF2902 +0.6 2.0 Tricarboxylate transport protein TctC compare
GFF2201 +0.6 1.8 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
GFF3442 +0.6 1.1 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF5534 +0.6 1.6 Two-component hybrid sensor and regulator compare
GFF5076 +0.6 1.0 Alkanesulfonates transport system permease protein compare
GFF5633 +0.6 1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) compare
GFF4973 +0.6 2.6 Aerotaxis sensor receptor protein compare
GFF544 +0.6 1.5 hypothetical protein compare
GFF3211 +0.6 1.8 hypothetical protein compare
GFF5707 +0.6 1.7 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF1407 +0.6 2.7 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF3567 +0.6 2.4 NAD(P)H dehydrogenase, quinone family compare
GFF2963 +0.6 1.0 Dimethylmenaquinone methyltransferase family protein compare
GFF1985 +0.6 1.3 hypothetical protein compare
GFF922 +0.6 3.6 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
GFF1064 +0.5 2.3 Mobile element protein compare
GFF3412 +0.5 1.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
GFF5477 +0.5 1.3 Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-) compare
GFF2645 +0.5 1.8 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
GFF5431 +0.5 0.7 Vitamin B12 ABC transporter, permease component BtuC compare
GFF2869 +0.5 2.9 Transcriptional regulator, IclR family compare
GFF3792 +0.5 1.6 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF4438 +0.5 3.7 Conjugative transfer protein TrbE compare
GFF1571 +0.5 1.0 Hypothetical Nudix-like regulator compare
GFF5449 +0.5 2.1 ATP-dependent 23S rRNA helicase DbpA compare
GFF3170 +0.5 1.0 hypothetical protein compare
GFF2473 +0.5 2.5 hypothetical protein compare
GFF1642 +0.5 0.9 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
GFF5715 +0.5 1.3 Urea carboxylase-related ABC transporter, ATPase protein compare
GFF1529 +0.5 1.8 Putative transcriptional regulator compare
GFF2289 +0.5 2.9 Catechol 2,3-dioxygenase (EC 1.13.11.2) compare
GFF3900 +0.5 1.0 hypothetical protein compare
GFF4481 +0.5 1.9 Glycosyl transferase, group 1 compare
GFF2640 +0.5 1.3 Single-stranded DNA-binding protein compare
GFF3757 +0.5 1.8 Inner membrane component of tripartite multidrug resistance system compare
GFF3395 +0.5 0.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1189 +0.5 2.2 putative exported protein compare
GFF2734 +0.5 0.9 hypothetical protein compare
GFF5437 +0.5 1.8 Periplasmic molybdate-binding domain compare
GFF3843 +0.5 1.6 membrane protein compare
GFF5774 +0.5 2.0 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF3129 +0.5 2.1 Mobile element protein compare
GFF1409 +0.5 0.9 Flagellar L-ring protein FlgH compare
GFF1651 +0.5 1.5 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
GFF2064 +0.5 1.7 D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) compare
GFF2117 +0.5 2.5 Sigma-fimbriae tip adhesin compare
GFF5053 +0.5 1.3 Predicted metal-dependent membrane protease compare
GFF4768 +0.5 2.5 FIG137776: Glycosyltransferase compare
GFF434 +0.5 0.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF1525 +0.5 2.4 Benzoylformate decarboxylase (EC 4.1.1.7) compare
GFF4427 +0.5 0.9 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
GFF471 +0.5 2.0 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
GFF315 +0.5 2.4 cointegrate resolution protein S compare
GFF1821 +0.5 0.8 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF1516 +0.5 1.0 Cyanoglobin; Hemoglobin-like protein HbN compare
GFF5231 +0.5 2.3 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF5667 +0.5 0.7 6-hexanolactone hydrolase compare
GFF1116 +0.5 0.9 hypothetical protein compare
GFF5211 +0.5 0.7 hypothetical protein compare
GFF2949 +0.5 1.8 Beta-propeller domains of methanol dehydrogenase type compare
GFF1932 +0.5 0.6 Bll5738 protein compare
GFF3584 +0.5 0.5 FIG027190: Putative transmembrane protein compare
GFF1938 +0.5 2.0 Transcriptional regulator, LysR family compare
GFF4029 +0.5 1.6 Aerotaxis sensor receptor protein compare
GFF3083 +0.5 2.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
GFF2983 +0.5 1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5183 +0.5 0.8 glutamyl-Q-tRNA synthetase compare
GFF3906 +0.5 2.5 Nikel transport family protein NikM compare
GFF39 +0.5 1.3 hypothetical protein compare
GFF973 +0.5 1.0 hypothetical protein compare
GFF2200 +0.5 2.6 Transketolase (EC 2.2.1.1) compare
GFF425 +0.5 2.3 LysR-family transcriptional regulator compare
GFF3327 +0.5 2.3 Tetrapyrrole methylase family protein compare
GFF4742 +0.5 2.2 hypothetical protein compare
GFF4027 +0.5 1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF3178 +0.5 0.9 Death on curing protein, Doc toxin compare
GFF4119 +0.5 1.4 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
GFF2169 +0.5 1.2 Putative fumarylacetoacetate (FAA) hydrolase compare
GFF2107 +0.5 1.8 Alpha-methylacyl-CoA racemase (EC 5.1.99.4) compare
GFF5683 +0.4 1.9 Aquaporin Z compare
GFF5438 +0.4 0.6 Nitroreductase family protein compare
GFF2639 +0.4 2.4 hypothetical protein compare
GFF5301 +0.4 1.4 hypothetical protein compare
GFF5008 +0.4 2.6 Tricarboxylate transport protein TctC compare
GFF4142 +0.4 1.6 transcriptional regulator, Crp/Fnr family compare
GFF612 +0.4 1.8 Putative sensor-like histidine kinase YfhK compare
GFF1876 +0.4 1.7 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF3615 +0.4 1.3 hypothetical protein compare
GFF3945 +0.4 0.7 hypothetical protein compare
GFF3153 +0.4 2.2 Conjugative transfer transglycosylase compare
GFF2635 +0.4 1.5 Transcriptional regulator, HxlR family compare
GFF4766 +0.4 3.1 Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) compare
GFF5005 +0.4 0.9 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) compare
GFF1128 +0.4 0.5 hypothetical protein compare
GFF3241 +0.4 1.0 hypothetical protein compare
GFF4157 +0.4 1.2 y4eB gene in pNGR234a homolog compare
GFF1451 +0.4 1.7 Flagellar motor switch protein FliG compare
GFF5391 +0.4 2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF459 +0.4 2.1 Tricarboxylate transport protein TctC compare
GFF5552 +0.4 1.0 hypothetical protein compare
GFF3663 +0.4 2.5 Assimilatory nitrate reductase large subunit (EC:1.7.99.4) compare
GFF1178 +0.4 2.0 ABC transporter, permease protein, putative compare
GFF4414 +0.4 2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF187 +0.4 1.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF2710 +0.4 1.0 Transcriptional regulator, LysR family compare
GFF4122 +0.4 1.0 Flp pilus assembly protein CpaE compare
GFF1211 +0.4 2.8 Sulfate permease compare
GFF4950 +0.4 1.4 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF1130 +0.4 1.5 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
GFF5127 +0.4 2.6 Tricarboxylate transport membrane protein TctA compare
GFF2618 +0.4 2.1 MotA/TolQ/ExbB proton channel family protein compare
GFF5087 +0.4 1.3 Tricarboxylate transport protein TctC compare
GFF4752 +0.4 2.9 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) compare
GFF1652 +0.4 1.0 similar to protocatechuate 4,5-dioxygenase beta chain compare
GFF5630 +0.4 0.6 Transcriptional regulator, AraC family compare
GFF1454 +0.4 1.5 Flagellum-specific ATP synthase FliI compare
GFF2594 +0.4 2.6 Adenylate cyclase (EC 4.6.1.1) compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_OrganicAcid7 across organisms