Experiment set2S44 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS13805 -3.0 -2.1 HAD family hydrolase compare
A4249_RS01590 -2.8 -1.9 site-specific DNA-methyltransferase compare
A4249_RS12210 -2.1 -2.7 tyrosine recombinase XerC compare
A4249_RS09405 -2.1 -2.4 beta-N-acetylhexosaminidase compare
A4249_RS16085 -1.7 -2.0 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS09330 -1.5 -1.7 glycine cleavage system protein GcvH compare
A4249_RS04475 -1.5 -2.2 response regulator transcription factor compare
A4249_RS12970 -1.5 -4.6 glycosyltransferase family 61 protein compare
A4249_RS10965 -1.4 -1.3 response regulator compare
A4249_RS09255 -1.4 -0.9 phosphoribosylamine--glycine ligase compare
A4249_RS04085 -1.4 -3.1 ribonuclease E/G compare
A4249_RS02325 -1.4 -1.6 23S ribosomal RNA compare
A4249_RS17075 -1.3 -1.5 energy transducer TonB compare
A4249_RS11125 -1.3 -9.0 glycosyltransferase family 9 protein compare
A4249_RS16765 -1.3 -2.6 hypothetical protein compare
A4249_RS07920 -1.2 -4.5 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS13200 -1.2 -2.5 thiamine pyrophosphate-dependent enzyme compare
A4249_RS09265 -1.2 -1.9 exodeoxyribonuclease VII large subunit compare
A4249_RS09605 -1.2 -1.7 DUF6468 domain-containing protein compare
A4249_RS14135 -1.2 -1.9 ATP-binding protein compare
A4249_RS07320 -1.1 -2.1 hypothetical protein compare
A4249_RS05620 -1.1 -5.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13640 -1.1 -2.0 molecular chaperone DnaJ compare
A4249_RS00100 -1.1 -2.0 PadR family transcriptional regulator compare
A4249_RS08405 -1.0 -2.2 TIGR01841 family phasin compare
A4249_RS14065 -1.0 -2.5 MFS transporter compare
A4249_RS06165 -1.0 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS08865 -1.0 -1.4 DUF1192 domain-containing protein compare
A4249_RS11825 -1.0 -1.0 DUF6521 family protein compare
A4249_RS05845 -1.0 -2.0 sigma-70 family RNA polymerase sigma factor compare
A4249_RS15360 -0.9 -1.2 DNA replication/repair protein RecF compare
A4249_RS13560 -0.9 -1.8 glutaredoxin 3 compare
A4249_RS16585 -0.9 -1.6 hypothetical protein compare
A4249_RS16505 -0.9 -3.0 SEC-C metal-binding domain-containing protein compare
A4249_RS03690 -0.9 -1.2 hypothetical protein compare
A4249_RS04045 -0.9 -3.8 GNAT family N-acetyltransferase compare
A4249_RS06230 -0.9 -1.3 OmpH family outer membrane protein compare
A4249_RS03645 -0.9 -3.4 TonB-dependent receptor compare
A4249_RS05625 -0.8 -6.4 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS03060 -0.8 -1.4 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS00720 -0.8 -1.5 DUF1294 domain-containing protein compare
A4249_RS08855 -0.8 -1.8 L,D-transpeptidase family protein compare
A4249_RS14875 -0.8 -1.6 benzoate/H(+) symporter BenE family transporter compare
A4249_RS11430 -0.8 -2.4 cell division protein compare
A4249_RS07910 -0.8 -1.0 2-hydroxyacid dehydrogenase compare
A4249_RS15865 -0.8 -1.2 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS01905 -0.8 -1.2 TrbC/VirB2 family protein compare
A4249_RS05590 -0.8 -1.5 amino acid ABC transporter substrate-binding protein compare
A4249_RS14230 -0.7 -1.9 hypothetical protein compare
A4249_RS08285 -0.7 -1.2 preQ(1) synthase compare
A4249_RS07810 -0.7 -2.2 hypothetical protein compare
A4249_RS12225 -0.7 -0.8 SDR family oxidoreductase compare
A4249_RS09210 -0.7 -0.9 hypothetical protein compare
A4249_RS06665 -0.7 -1.1 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS15110 -0.7 -1.8 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS16135 -0.7 -2.0 glycoside hydrolase family 3 N-terminal domain-containing protein compare
A4249_RS10105 -0.7 -0.7 DUF2460 domain-containing protein compare
A4249_RS07865 -0.6 -2.1 RluA family pseudouridine synthase compare
A4249_RS16725 -0.6 -1.5 hypothetical protein compare
A4249_RS03570 -0.6 -1.2 TonB family protein compare
A4249_RS04350 -0.6 -1.4 lipopolysaccharide biosynthesis protein compare
A4249_RS10375 -0.6 -2.8 DUF1491 family protein compare
A4249_RS13480 -0.6 -2.6 protein-export chaperone SecB compare
A4249_RS04960 -0.6 -1.9 UvrD-helicase domain-containing protein compare
A4249_RS01010 -0.6 -3.4 capsular polysaccharide biosynthesis protein compare
A4249_RS01275 -0.6 -2.0 hypothetical protein compare
A4249_RS05300 -0.6 -1.0 hypothetical protein compare
A4249_RS14025 -0.6 -0.7 CHAP domain-containing protein compare
A4249_RS16940 -0.6 -1.8 GIY-YIG nuclease family protein compare
A4249_RS11450 -0.6 -2.8 histidinol-phosphate transaminase compare
A4249_RS13750 -0.6 -0.8 hypothetical protein compare
A4249_RS01285 -0.6 -1.9 head decoration protein compare
A4249_RS02650 -0.6 -1.3 hypothetical protein compare
A4249_RS02675 -0.6 -2.6 N-acetyltransferase compare
A4249_RS11570 -0.6 -1.6 YeeE/YedE thiosulfate transporter family protein compare
A4249_RS14900 -0.6 -2.8 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS07995 -0.6 -0.9 type II 3-dehydroquinate dehydratase compare
A4249_RS13705 -0.6 -2.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
A4249_RS09250 -0.6 -1.8 murein L,D-transpeptidase catalytic domain family protein compare
A4249_RS04125 -0.5 -1.2 mechanosensitive ion channel family protein compare
A4249_RS06930 -0.5 -1.4 SOS response-associated peptidase family protein compare
A4249_RS08375 -0.5 -1.0 hypothetical protein compare
A4249_RS14360 -0.5 -1.4 pilus assembly protein compare
A4249_RS12455 -0.5 -1.3 hypothetical protein compare
A4249_RS16485 -0.5 -0.7 hypothetical protein compare
A4249_RS09275 -0.5 -1.8 DUF3035 domain-containing protein compare
A4249_RS10020 -0.5 -3.1 acetolactate synthase 2 catalytic subunit compare
A4249_RS16615 -0.5 -1.4 hypothetical protein compare
A4249_RS13960 -0.5 -1.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
A4249_RS01610 -0.5 -0.7 TetR/AcrR family transcriptional regulator compare
A4249_RS11185 -0.5 -1.4 exopolysaccharide biosynthesis protein compare
A4249_RS09115 -0.5 -1.0 sigma-54 dependent transcriptional regulator compare
A4249_RS16545 -0.5 -1.2 hypothetical protein compare
A4249_RS13535 -0.5 -1.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS08725 -0.5 -1.9 hypothetical protein compare
A4249_RS04080 -0.5 -1.6 M48 family metalloprotease compare
A4249_RS13745 -0.5 -2.7 DUF3576 domain-containing protein compare
A4249_RS14580 -0.5 -1.4 hypothetical protein compare
A4249_RS11285 -0.5 -1.2 double-strand break repair protein AddB compare
A4249_RS02735 -0.5 -2.0 flagellin compare
A4249_RS13020 -0.5 -2.6 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS04345 -0.5 -1.5 glycosyltransferase family A protein compare
A4249_RS06830 -0.5 -1.5 chorismate mutase compare
A4249_RS01325 -0.5 -0.5 hypothetical protein compare
A4249_RS11425 -0.5 -0.9 ATP-binding cassette domain-containing protein compare
A4249_RS01075 -0.5 -1.3 DNA-binding domain-containing protein compare
A4249_RS02295 -0.5 -2.1 holdfast anchoring protein HfaA compare
A4249_RS01415 -0.5 -0.7 phage Gp37/Gp68 family protein compare
A4249_RS01090 -0.5 -0.6 sigma-70 family RNA polymerase sigma factor compare
A4249_RS11645 -0.5 -1.5 helix-turn-helix domain-containing protein compare
A4249_RS14550 -0.5 -1.9 AMP nucleosidase compare
A4249_RS02560 -0.5 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
A4249_RS01120 -0.5 -1.3 uracil-DNA glycosylase compare
A4249_RS16520 -0.4 -1.8 hypothetical protein compare
A4249_RS05340 -0.4 -1.4 helix-hairpin-helix domain-containing protein compare
A4249_RS06560 -0.4 -2.2 amino acid permease compare
A4249_RS06155 -0.4 -1.7 anthranilate synthase component I compare
A4249_RS07985 -0.4 -1.2 type II toxin-antitoxin system VapC family toxin compare
A4249_RS01670 -0.4 -1.8 excinuclease ABC subunit UvrC compare
A4249_RS10835 -0.4 -1.2 c-type cytochrome biogenesis protein CcmI compare
A4249_RS16685 -0.4 -0.6 tRNA-Arg compare
A4249_RS08380 -0.4 -1.3 RidA family protein compare
A4249_RS04060 -0.4 -0.8 ABC transporter ATP-binding protein compare
A4249_RS07930 -0.4 -2.8 homocysteine S-methyltransferase family protein compare
A4249_RS12365 -0.4 -1.8 D-glycerate dehydrogenase compare
A4249_RS08705 -0.4 -1.8 response regulator compare
A4249_RS13195 -0.4 -1.3 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS11920 -0.4 -2.7 ornithine carbamoyltransferase compare
A4249_RS10710 -0.4 -0.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
A4249_RS03225 -0.4 -1.2 hypothetical protein compare
A4249_RS08775 -0.4 -1.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS01235 -0.4 -0.5 hypothetical protein compare
A4249_RS16970 -0.4 -2.1 hypothetical protein compare
A4249_RS09995 -0.4 -2.7 3-isopropylmalate dehydrogenase compare
A4249_RS08820 -0.4 -1.5 bacterioferritin compare
A4249_RS07665 -0.4 -1.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS11730 -0.4 -2.1 DUF305 domain-containing protein compare
A4249_RS16695 -0.4 -0.7 potassium-transporting ATPase subunit F compare
A4249_RS01340 -0.4 -1.6 phosphoadenosine phosphosulfate reductase family protein compare
A4249_RS13590 -0.4 -1.7 [protein-PII] uridylyltransferase compare
A4249_RS05920 -0.4 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
A4249_RS12860 -0.4 -0.8 DUF350 domain-containing protein compare
A4249_RS09830 -0.4 -1.6 ATP-binding protein compare
A4249_RS11265 -0.4 -1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
A4249_RS16105 -0.4 -3.1 glutamate synthase large subunit compare
A4249_RS05960 -0.4 -0.6 MerR family transcriptional regulator compare
A4249_RS13105 -0.4 -1.5 RNA polymerase sigma factor compare
A4249_RS10100 -0.4 -1.2 DUF2163 domain-containing protein compare
A4249_RS16275 -0.4 -2.1 recombinase family protein compare
A4249_RS13310 -0.4 -1.7 transglutaminase family protein compare
A4249_RS04490 -0.4 -0.7 cobaltochelatase subunit CobS compare
A4249_RS10025 -0.4 -2.3 ketol-acid reductoisomerase compare
A4249_RS02060 -0.4 -1.3 SDR family oxidoreductase compare
A4249_RS00685 -0.4 -1.5 hypothetical protein compare
A4249_RS11605 -0.4 -1.3 isoprenylcysteine carboxylmethyltransferase family protein compare
A4249_RS15590 -0.4 -1.3 chemotaxis protein CheD compare
A4249_RS00425 -0.4 -1.1 VOC family protein compare
A4249_RS08145 -0.4 -1.3 NAD(P)H-binding protein compare
A4249_RS08020 -0.4 -1.7 EF-hand domain-containing protein compare
A4249_RS10010 -0.4 -1.9 2-isopropylmalate synthase compare
A4249_RS12085 -0.4 -0.7 DUF883 family protein compare
A4249_RS14155 -0.4 -1.3 thioredoxin compare
A4249_RS11350 -0.4 -1.1 pseudouridine synthase compare
A4249_RS00745 -0.3 -1.7 SDR family NAD(P)-dependent oxidoreductase compare
A4249_RS10700 -0.3 -1.9 imidazoleglycerol-phosphate dehydratase HisB compare
A4249_RS02770 -0.3 -2.0 hypothetical protein compare
A4249_RS08500 -0.3 -0.9 K+/H+ antiporter subunit F compare
A4249_RS02105 -0.3 -2.0 methyl-accepting chemotaxis protein compare
A4249_RS11010 -0.3 -2.4 ATP-dependent chaperone ClpB compare
A4249_RS10035 -0.3 -1.5 hypothetical protein compare
A4249_RS00755 -0.3 -0.9 YbdD/YjiX family protein compare
A4249_RS00260 -0.3 -0.7 YqgE/AlgH family protein compare
A4249_RS10695 -0.3 -2.0 histidinol dehydrogenase compare
A4249_RS07120 -0.3 -0.9 hypothetical protein compare
A4249_RS15225 -0.3 -0.6 flagellar biosynthesis protein FliQ compare
A4249_RS16740 -0.3 -1.6 hypothetical protein compare
A4249_RS02185 -0.3 -1.9 polysaccharide biosynthesis tyrosine autokinase compare
A4249_RS01770 -0.3 -2.0 hypothetical protein compare
A4249_RS10360 -0.3 -0.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS10975 -0.3 -1.7 DUF599 family protein compare
A4249_RS10750 -0.3 -1.1 hypothetical protein compare
A4249_RS09515 -0.3 -0.7 hypothetical protein compare
A4249_RS16950 -0.3 -0.9 flavin reductase family protein compare
A4249_RS14680 -0.3 -0.7 PAS domain-containing sensor histidine kinase compare
A4249_RS04310 -0.3 -1.1 hypothetical protein compare
A4249_RS00925 -0.3 -0.4 multidrug efflux SMR transporter compare
A4249_RS14835 -0.3 -1.4 S41 family peptidase compare
A4249_RS16490 -0.3 -1.5 hypothetical protein compare
A4249_RS10295 -0.3 -0.5 hypothetical protein compare
A4249_RS15000 -0.3 -0.9 endonuclease III compare
A4249_RS03670 -0.3 -0.7 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS02875 -0.3 -1.6 autotransporter assembly complex family protein compare
A4249_RS01400 -0.3 -0.7 ParB N-terminal domain-containing protein compare
A4249_RS10160 -0.3 -0.9 HK97 family phage prohead protease compare
A4249_RS02595 -0.3 -2.4 isocitrate lyase compare
A4249_RS08885 -0.3 -0.8 DUF465 domain-containing protein compare
A4249_RS10565 -0.3 -1.6 VOC family protein compare
A4249_RS03175 -0.3 -1.6 ParB N-terminal domain-containing protein compare
A4249_RS16010 -0.3 -0.9 flagellar type III secretion system pore protein FliP compare
A4249_RS11665 -0.3 -1.8 NAD(P)/FAD-dependent oxidoreductase compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source HMW_DNA_from_Pseudomonas_EB271-B4-1 across organisms