Experiment set2S425 for Bacteroides ovatus ATCC 8483

Compare to:

RCM 1 x carbon source complex media

200 most important genes:

  gene name fitness t score description  
BACOVA_01423 -3.8 -2.6 anaerobic ribonucleoside-triphosphate reductase activating protein compare
BACOVA_05104 -3.4 -12.6 glycosyltransferase, group 1 family protein compare
BACOVA_03653 -2.9 -3.5 outer membrane protein, OMP85 family compare
BACOVA_01269 -2.8 -9.0 hypothetical protein compare
BACOVA_02352 -2.7 -3.1 DNA-binding helix-turn-helix protein compare
BACOVA_01116 -2.5 -5.3 ATP-binding protein, Mrp/Nbp35 family compare
BACOVA_00382 -2.5 -2.6 hypothetical protein compare
BACOVA_03652 -2.5 -2.9 hypothetical protein compare
BACOVA_02503 -2.3 -5.9 alpha amylase, catalytic domain protein compare
BACOVA_01422 -2.3 -5.8 anaerobic ribonucleoside-triphosphate reductase compare
BACOVA_01719 -2.3 -2.6 transporter, major facilitator family protein compare
BACOVA_01915 -2.2 -3.6 shikimate kinase compare
BACOVA_00598 -2.1 -3.9 SNARE-like domain protein compare
BACOVA_02024 -2.0 -10.4 kinase, PfkB family compare
BACOVA_03296 -2.0 -3.4 chorismate synthase compare
BACOVA_04490 -2.0 -11.1 pyruvate synthase compare
BACOVA_05119 -1.9 -11.0 hypothetical protein compare
BACOVA_05103 -1.9 -7.0 putative glycogen debranching enzyme, archaeal type compare
BACOVA_01109 -1.9 -7.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase compare
BACOVA_01268 -1.8 -2.4 hypothetical protein compare
BACOVA_02200 -1.8 -2.6 transcriptional regulator, AsnC family compare
BACOVA_01959 -1.8 -11.8 GH3 auxin-responsive promoter compare
BACOVA_03148 -1.8 -2.2 hypothetical protein compare
BACOVA_01367 -1.8 -4.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
BACOVA_02249 -1.7 -4.0 DNA-binding regulatory protein, YebC/PmpR family compare
BACOVA_02736 -1.7 -10.0 ribonuclease R compare
BACOVA_05118 -1.7 -7.7 ABC transporter, ATP-binding protein compare
BACOVA_04235 -1.7 -1.7 hypothetical protein compare
BACOVA_03548 -1.6 -2.8 regulatory protein RecX compare
BACOVA_03523 -1.6 -4.8 translation elongation factor P compare
BACOVA_01357 -1.6 -2.8 DNA-directed DNA polymerase compare
BACOVA_01561 -1.6 -5.0 zinc finger/helix-turn-helix protein, YgiT family compare
BACOVA_04712 -1.5 -3.0 hypothetical protein compare
BACOVA_01432 -1.5 -2.5 peptidase, M23 family compare
BACOVA_01050 -1.5 -2.1 site-specific recombinase, phage integrase family/ribosomal subunit interface protein compare
BACOVA_01643 -1.5 -8.1 prokaryotic transcription elongation factor, GreA/GreB domain protein compare
BACOVA_05555 -1.4 -6.6 O-succinylbenzoic acid--CoA ligase compare
BACOVA_02237 -1.4 -3.1 electron transport complex, RnfABCDGE type, C subunit compare
BACOVA_05552 -1.4 -5.7 naphthoate synthase compare
BACOVA_05067 -1.3 -4.6 ubiquinone/menaquinone biosynthesis methyltransferase compare
BACOVA_01953 -1.3 -8.5 4-phosphoerythronate dehydrogenase compare
BACOVA_05338 -1.3 -6.0 tRNA modification GTPase TrmE compare
BACOVA_01761 -1.3 -2.0 hypothetical protein compare
BACOVA_04060 -1.3 -2.4 acetyltransferase, GNAT family compare
BACOVA_02258 -1.2 -3.4 GTP-binding protein LepA compare
BACOVA_05550 -1.2 -6.3 isochorismate synthase compare
BACOVA_01078 -1.2 -10.0 GTP-binding protein TypA compare
BACOVA_00723 -1.2 -6.4 tetratricopeptide repeat protein compare
BACOVA_01350 -1.2 -3.5 hypothetical protein compare
BACOVA_05554 -1.2 -5.3 putative o-succinylbenzoate synthase compare
BACOVA_04463 -1.2 -2.8 hypothetical protein compare
BACOVA_03829 -1.2 -2.5 KDPG and KHG aldolase compare
BACOVA_05539 -1.1 -3.7 hypothetical protein compare
BACOVA_05551 -1.1 -5.3 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
BACOVA_02236 -1.1 -3.1 electron transport complex, RnfABCDGE type, B subunit compare
BACOVA_00337 -1.1 -5.7 ATP-dependent DNA helicase RecQ compare
BACOVA_01160 -1.1 -3.1 putative 3-deoxy-7-phosphoheptulonate synthase compare
BACOVA_02593 -1.0 -4.1 hypothetical protein compare
BACOVA_00715 -1.0 -1.3 hypothetical protein compare
BACOVA_04258 -1.0 -4.7 CDP-alcohol phosphatidyltransferase compare
BACOVA_05105 -1.0 -6.4 glycosyl hydrolase, family 57 compare
BACOVA_04832 -1.0 -2.6 dimethyladenosine transferase compare
BACOVA_00202 -1.0 -1.4 exonuclease compare
BACOVA_01260 -1.0 -6.8 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BACOVA_04311 -1.0 -1.7 hypothetical protein compare
BACOVA_03182 -1.0 -2.5 transcriptional regulator, MarR family compare
BACOVA_01922 -1.0 -6.3 polysaccharide deacetylase compare
BACOVA_02434 -1.0 -4.6 NAD dependent epimerase/dehydratase family protein compare
BACOVA_04198 -1.0 -1.8 hypothetical protein compare
BACOVA_00721 -1.0 -2.0 ATPase family associated with various cellular activities (AAA) compare
BACOVA_02240 -1.0 -2.3 electron transport complex, RnfABCDGE type, E subunit compare
BACOVA_03002 -0.9 -3.3 hypothetical protein compare
BACOVA_01083 -0.9 -6.5 mannose-1-phosphate guanylyltransferase compare
BACOVA_00667 -0.9 -6.0 phospholipase D domain protein compare
BACOVA_03216 -0.9 -2.7 hypothetical protein compare
BACOVA_00199 -0.9 -2.2 RNA methyltransferase, TrmH family, group 3 compare
BACOVA_02985 -0.9 -3.0 hypothetical protein compare
BACOVA_01435 -0.9 -3.3 hypothetical protein compare
BACOVA_04485 -0.9 -2.4 hypothetical protein compare
BACOVA_04828 -0.9 -1.7 hypothetical protein compare
BACOVA_05587 -0.9 -1.7 DNA-binding helix-turn-helix protein compare
BACOVA_01130 -0.9 -3.0 malate dehydrogenase, NAD-dependent compare
BACOVA_04304 -0.9 -1.8 hypothetical protein compare
BACOVA_01942 -0.9 -5.6 putative histidinol-phosphate transaminase compare
BACOVA_01691 -0.9 -1.5 bacterial transferase hexapeptide repeat protein compare
BACOVA_04354 -0.9 -5.2 Xaa-His dipeptidase compare
BACOVA_04260 -0.9 -2.3 phosphatidylglycerophosphatase A compare
BACOVA_00331 -0.9 -2.8 hypothetical protein compare
BACOVA_03193 -0.9 -3.3 tRNA methylthiotransferase YqeV compare
BACOVA_04430 -0.9 -2.6 methylmalonyl-CoA epimerase compare
BACOVA_01920 -0.9 -3.8 GtrA-like protein compare
BACOVA_03620 -0.8 -5.8 transcriptional regulator, TetR family compare
BACOVA_01496 -0.8 -2.3 hypothetical protein compare
BACOVA_01944 -0.8 -3.7 LICD family protein compare
BACOVA_04065 -0.8 -1.5 hypothetical protein compare
BACOVA_03830 -0.8 -2.8 kinase, PfkB family compare
BACOVA_04591 -0.8 -4.0 hypothetical protein compare
BACOVA_02841 -0.8 -5.6 RNA methyltransferase, TrmH family compare
BACOVA_00575 -0.8 -1.7 hypothetical protein compare
BACOVA_02853 -0.8 -4.0 radical SAM domain protein compare
BACOVA_01921 -0.8 -6.1 glycosyltransferase, group 2 family protein compare
BACOVA_04725 -0.8 -1.9 hypothetical protein compare
BACOVA_04550 -0.8 -2.1 hypothetical protein compare
BACOVA_02893 -0.8 -2.1 succinate CoA transferase compare
BACOVA_04044 -0.8 -1.6 hypothetical protein compare
BACOVA_05132 -0.8 -6.6 nucleoside transporter compare
BACOVA_05341 -0.8 -4.5 phosphorylase family compare
BACOVA_01713 -0.8 -1.5 hydrolase, NUDIX family compare
BACOVA_03528 -0.8 -5.9 pseudouridine synthase, RluA family compare
BACOVA_02561 -0.8 -2.9 FHA domain protein compare
BACOVA_02938 -0.8 -4.9 purine nucleoside phosphorylase I, inosine and guanosine-specific compare
BACOVA_01727 -0.8 -1.2 putative DNA-binding protein compare
BACOVA_02085 -0.8 -3.5 2-oxoacid:acceptor oxidoreductase, alpha subunit compare
BACOVA_04827 -0.8 -3.1 iojap-like protein compare
BACOVA_02268 -0.8 -5.9 pyruvate, phosphate dikinase compare
BACOVA_01424 -0.8 -1.0 hypothetical protein compare
BACOVA_04005 -0.8 -1.6 hypothetical protein compare
BACOVA_05120 -0.8 -5.3 peptidase M16 inactive domain protein compare
BACOVA_04637 -0.8 -5.0 phospholipase D domain protein compare
BACOVA_01918 -0.8 -6.0 putative dolichyl-phosphate-mannose-protein mannosyltransferase compare
BACOVA_05452 -0.8 -2.1 hypothetical protein compare
BACOVA_03291 -0.8 -2.3 hypothetical protein compare
BACOVA_02940 -0.8 -3.9 signal peptide peptidase SppA, 67K type compare
BACOVA_00439 -0.7 -2.1 hypothetical protein compare
BACOVA_04527 -0.7 -1.4 hypothetical protein compare
BACOVA_04677 -0.7 -2.3 hypothetical protein compare
BACOVA_00398 -0.7 -2.9 Vitamin B12 dependent methionine synthase, activation domain protein compare
BACOVA_05428 -0.7 -1.3 hypothetical protein compare
BACOVA_02238 -0.7 -2.8 electron transport complex, RnfABCDGE type, D subunit compare
BACOVA_01104 -0.7 -1.3 CoA binding domain protein compare
BACOVA_05101 -0.7 -4.4 putative membrane protein, MarC family compare
BACOVA_03684 -0.7 -1.4 hypothetical protein compare
BACOVA_00956 -0.7 -3.8 WbqC-like protein compare
BACOVA_05018 -0.7 -2.0 hypothetical protein compare
BACOVA_01919 -0.7 -5.7 arylsulfatase compare
BACOVA_02241 -0.7 -1.1 electron transport complex, RnfABCDGE type, A subunit compare
BACOVA_05051 -0.7 -3.2 hypothetical protein compare
BACOVA_03831 -0.7 -3.3 transcriptional regulator, LacI family compare
BACOVA_03986 -0.7 -2.2 ATP-binding cassette protein, ChvD family compare
BACOVA_05075 -0.7 -2.5 tRNA pseudouridine synthase A compare
BACOVA_00283 -0.7 -4.0 sigma factor regulatory protein, FecR/PupR family compare
BACOVA_00924 -0.7 -1.2 hypothetical protein compare
BACOVA_03972 -0.7 -2.3 hypothetical protein compare
BACOVA_01415 -0.6 -1.1 hypothetical protein compare
BACOVA_02123 -0.6 -2.7 tyrosine recombinase XerD compare
BACOVA_02594 -0.6 -1.6 hypothetical protein compare
BACOVA_02914 -0.6 -2.8 tRNA pseudouridine synthase B compare
BACOVA_04597 -0.6 -4.6 arylsulfatase compare
BACOVA_04797 -0.6 -1.6 hypothetical protein compare
BACOVA_05167 -0.6 -2.6 hypothetical protein compare
BACOVA_04538 -0.6 -2.2 electron transfer flavoprotein FAD-binding domain protein compare
BACOVA_03586 -0.6 -3.5 cupin domain protein compare
BACOVA_01510 -0.6 -1.5 hypothetical protein compare
BACOVA_04333 -0.6 -0.7 hypothetical protein compare
BACOVA_02302 -0.6 -1.2 hypothetical protein compare
BACOVA_04839 -0.6 -3.9 LAO/AO transport system ATPase compare
BACOVA_02481 -0.6 -3.0 peptidase M16 inactive domain protein compare
BACOVA_04027 -0.6 -2.4 hypothetical protein compare
BACOVA_02596 -0.6 -2.3 ABC transporter, ATP-binding protein compare
BACOVA_03359 -0.6 -4.6 AMP-binding enzyme compare
BACOVA_04711 -0.6 -1.8 hypothetical protein compare
BACOVA_04598 -0.6 -4.8 PAP2 family protein compare
BACOVA_05046 -0.6 -4.0 peptidase, S9A/B/C family, catalytic domain protein compare
BACOVA_00223 -0.6 -1.3 hypothetical protein compare
BACOVA_00599 -0.6 -2.0 tetratricopeptide repeat protein compare
BACOVA_00075 -0.6 -1.8 V-type ATPase, D subunit compare
BACOVA_00538 -0.6 -1.8 hypothetical protein compare
BACOVA_01669 -0.6 -0.8 hypothetical protein compare
BACOVA_03706 -0.6 -2.9 hypothetical protein compare
BACOVA_05216 -0.6 -1.2 hypothetical protein compare
BACOVA_03978 -0.6 -1.9 LemA family protein compare
BACOVA_00072 -0.6 -2.8 hypothetical protein compare
BACOVA_00781 -0.6 -2.2 hypothetical protein compare
BACOVA_03550 -0.6 -2.6 hypothetical protein compare
BACOVA_02189 -0.6 -4.4 hypothetical protein compare
BACOVA_04857 -0.6 -2.9 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
BACOVA_02239 -0.6 -1.5 electron transport complex, RnfABCDGE type, G subunit compare
BACOVA_05344 -0.6 -3.4 WD40-like protein compare
BACOVA_05463 -0.6 -1.3 hypothetical protein compare
BACOVA_01635 -0.6 -4.5 butyrate kinase compare
BACOVA_02832 -0.6 -2.5 hypothetical protein compare
BACOVA_05081 -0.6 -1.6 hypothetical protein compare
BACOVA_03041 -0.6 -2.1 hypothetical protein compare
BACOVA_04071 -0.6 -2.1 hypothetical protein compare
BACOVA_02541 -0.6 -1.3 putative RNA polymerase-binding protein DksA compare
BACOVA_04259 -0.6 -2.5 hypothetical protein compare
BACOVA_05259 -0.6 -2.0 hypothetical protein compare
BACOVA_03307 -0.6 -2.0 hypothetical protein compare
BACOVA_01129 -0.6 -1.4 hypothetical protein compare
BACOVA_02935 -0.6 -1.1 tRNA-Phe compare
BACOVA_01070 -0.6 -4.3 hypothetical protein compare
BACOVA_01980 -0.6 -4.5 hypothetical protein compare
BACOVA_01152 -0.6 -1.2 peptidase, M23 family compare
BACOVA_01759 -0.6 -1.5 hypothetical protein compare
BACOVA_00642 -0.6 -1.5 TonB-dependent receptor compare
BACOVA_02574 -0.6 -1.2 hypothetical protein compare
BACOVA_02287 -0.6 -1.9 site-specific recombinase, phage integrase family compare
BACOVA_00584 -0.5 -3.2 RyR domain protein compare
BACOVA_04397 -0.5 -2.3 hypothetical protein compare
BACOVA_02599 -0.5 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Bacteroides ovatus ATCC 8483 in carbon source complex media experiments

For carbon source complex media RCM across organisms