Experiment set2S411 for Bacteroides ovatus ATCC 8483

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Mucin from porcine stomach type II 2.5 mg/ml carbon source

Group: carbon source
Media: Varel_Bryant_medium + Mucin from porcine stomach,Type II (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 2 genes in this experiment

For carbon source Mucin from porcine stomach,Type II in Bacteroides ovatus ATCC 8483

For carbon source Mucin from porcine stomach,Type II across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
adenosylcobalamin salvage from cobalamin 5 5 4
adenosylcobinamide-GDP salvage from cobinamide I 5 5 3
adenosylcobinamide-GDP salvage from cobinamide II 6 4 3
adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide 6 4 3
cobalamin salvage (eukaryotic) 8 4 4
superpathway of adenosylcobalamin salvage from cobinamide I 8 8 3
superpathway of adenosylcobalamin salvage from cobinamide II 9 7 3
adenosylcobalamin biosynthesis II (aerobic) 33 11 3
adenosylcobalamin biosynthesis I (anaerobic) 36 10 3