Experiment set2S380 for Variovorax sp. SCN45

Compare to:

no phage control

200 most important genes:

  gene name fitness t score description  
GFF6328 -4.4 -2.3 LPS-assembly lipoprotein LptE compare
GFF2836 -3.3 -4.5 MotA/TolQ/ExbB proton channel family protein compare
GFF239 -3.2 -3.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF2835 -3.2 -3.7 putative TonB-dependent receptor compare
GFF3928 -3.0 -2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF3888 -2.9 -6.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF6042 -2.9 -5.6 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF4305 -2.9 -2.1 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF5424 -2.9 -2.7 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF5324 -2.7 -2.9 Shikimate kinase I (EC 2.7.1.71) compare
GFF3889 -2.7 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5877 -2.6 -5.5 Probable proline rich signal peptide protein compare
GFF2730 -2.6 -3.9 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF6512 -2.6 -3.0 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF255 -2.5 -3.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF2627 -2.5 -5.0 Chorismate synthase (EC 4.2.3.5) compare
GFF371 -2.5 -3.6 RNA-binding protein YhbY compare
GFF7294 -2.4 -4.0 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF3600 -2.4 -3.6 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5325 -2.4 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF5307 -2.3 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF3890 -2.3 -3.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF489 -2.3 -6.4 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1324 -2.1 -3.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF5065 -2.1 -2.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF240 -2.1 -10.9 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF2523 -2.1 -3.9 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF5513 -2.0 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF5049 -2.0 -1.9 NAD-dependent protein deacetylase of SIR2 family compare
GFF6700 -2.0 -3.7 Single-stranded-DNA-specific exonuclease RecJ compare
GFF232 -2.0 -8.3 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF4454 -2.0 -5.9 Exoribonuclease II (EC 3.1.13.1) compare
GFF1105 -2.0 -3.6 Helicase compare
GFF944 -2.0 -3.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3651 -1.9 -2.2 PTS system, IIA component compare
GFF6036 -1.8 -7.2 DNA translocase FtsK compare
GFF2734 -1.8 -6.7 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF409 -1.8 -6.5 Osmolarity sensory histidine kinase EnvZ compare
GFF487 -1.8 -10.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4748 -1.8 -2.6 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF7295 -1.7 -4.2 HPr kinase/phosphorylase compare
GFF2838 -1.7 -1.9 hypothetical protein compare
GFF219 -1.7 -4.7 GTP-binding protein TypA/BipA compare
GFF3089 -1.7 -2.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1119 -1.7 -5.1 Ribonuclease HI (EC 3.1.26.4) compare
GFF3152 -1.7 -3.7 hypothetical protein compare
GFF5876 -1.7 -7.7 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3960 -1.7 -7.7 3'-to-5' oligoribonuclease (orn) compare
GFF408 -1.7 -2.2 Two-component system response regulator OmpR compare
GFF968 -1.6 -3.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5512 -1.6 -2.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF4000 -1.6 -5.8 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF302 -1.6 -1.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF966 -1.6 -7.0 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3229 -1.5 -2.6 hypothetical protein compare
GFF3952 -1.5 -3.4 LSU ribosomal protein L19p compare
GFF5491 -1.5 -5.3 Peptide deformylase (EC 3.5.1.88) compare
GFF4557 -1.5 -4.7 Dihydroorotase (EC 3.5.2.3) compare
GFF2804 -1.5 -2.7 Membrane protein compare
GFF1756 -1.5 -1.7 hypothetical protein compare
GFF6694 -1.4 -3.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF372 -1.3 -6.4 PMID: 11481431 compare
GFF4033 -1.3 -2.1 no description compare
GFF5896 -1.3 -5.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF967 -1.3 -9.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5509 -1.3 -3.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF6618 -1.3 -1.7 Mlr6156 protein compare
GFF4447 -1.3 -6.4 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF2341 -1.3 -1.7 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF89 -1.3 -2.3 hypothetical protein compare
GFF5118 -1.3 -3.2 gluconolactonase family protein compare
GFF3085 -1.2 -2.5 no description compare
GFF6499 -1.2 -2.4 hypothetical protein compare
GFF3790 -1.2 -4.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF339 -1.2 -2.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF7231 -1.2 -1.1 no description compare
GFF1106 -1.2 -2.7 UvrD/REP helicase compare
GFF4145 -1.2 -1.4 transcriptional regulators-like protein compare
GFF821 -1.2 -2.3 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF4107 -1.2 -1.7 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF5701 -1.2 -1.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF2090 -1.2 -3.3 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF1858 -1.2 -1.7 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF4023 -1.1 -1.7 no description compare
GFF3905 -1.1 -4.2 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF272 -1.1 -1.8 thioesterase superfamily protein compare
GFF431 -1.1 -2.3 Esterase/lipase compare
GFF303 -1.1 -4.1 Probable transcriptional regulatory protein YebC compare
GFF3649 -1.1 -7.3 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF6989 -1.1 -1.9 Flagellar basal-body rod modification protein FlgD compare
GFF6324 -1.1 -8.4 Kup system potassium uptake protein compare
GFF6876 -1.1 -8.2 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF3941 -1.1 -1.8 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3034 -1.1 -1.5 no description compare
GFF3870 -1.0 -4.1 Ribonuclease III (EC 3.1.26.3) compare
GFF3401 -1.0 -1.5 P-hydroxylaminobenzoate lyase compare
GFF6878 -1.0 -8.3 hypothetical protein compare
GFF2344 -1.0 -2.6 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF4839 -1.0 -1.8 Transcriptional regulator PA2737, MerR family compare
GFF6246 -1.0 -3.7 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2343 -1.0 -3.6 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF497 -1.0 -4.8 Phytoene synthase (EC 2.5.1.32) compare
GFF6875 -1.0 -5.1 hypothetical protein compare
GFF674 -1.0 -1.3 no description compare
GFF5057 -1.0 -8.3 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF2192 -1.0 -2.3 FIG00932626: hypothetical protein compare
GFF1984 -1.0 -1.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF4133 -0.9 -1.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
GFF1625 -0.9 -2.1 Transcriptional regulator, LysR family compare
GFF23 -0.9 -1.7 no description compare
GFF2973 -0.9 -1.3 Transcriptional regulator compare
GFF5209 -0.9 -2.6 DUF1854 domain-containing protein compare
GFF2547 -0.9 -2.5 Type I antifreeze protein compare
GFF3715 -0.9 -1.7 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF5666 -0.9 -2.8 Prevent host death protein, Phd antitoxin compare
GFF5267 -0.9 -2.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2515 -0.9 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF577 -0.9 -2.0 TolA protein compare
GFF1535 -0.9 -1.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF5036 -0.9 -3.0 Opine oxidase subunit B compare
GFF576 -0.9 -2.8 Tol biopolymer transport system, TolR protein compare
GFF2482 -0.9 -1.1 Urease accessory protein UreE compare
GFF6374 -0.9 -1.3 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF2701 -0.9 -2.2 CaiB/BaiF family protein compare
GFF1188 -0.8 -1.9 Thiazole synthase (EC 2.8.1.10) compare
GFF733 -0.8 -1.2 no description compare
GFF1600 -0.8 -1.5 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF5937 -0.8 -2.6 T6SS component TssG (ImpH/VasB) compare
GFF6263 -0.8 -0.9 Uncharacterized protein Atu0170, clustered with phosphonate utilization compare
GFF7337 -0.8 -2.0 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF970 -0.8 -5.6 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF5383 -0.8 -1.3 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF1264 -0.8 -1.9 Transcriptional regulator, Xre family compare
GFF7263 -0.8 -2.3 Malate dehydrogenase (EC 1.1.1.37) compare
GFF3206 -0.8 -1.2 no description compare
GFF1805 -0.8 -2.5 Transcriptional regulator, GntR family compare
GFF6934 -0.8 -1.7 Universal stress protein family compare
GFF2436 -0.8 -1.9 no description compare
GFF3621 -0.8 -4.9 Magnesium and cobalt transport protein CorA compare
GFF122 -0.8 -1.8 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) compare
GFF6383 -0.8 -1.4 FIG00440100: hypothetical protein compare
GFF399 -0.8 -6.4 3'-to-5' exoribonuclease RNase R compare
GFF4209 -0.8 -1.8 no description compare
GFF5534 -0.8 -2.3 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF488 -0.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF3584 -0.8 -1.3 hypothetical protein compare
GFF3265 -0.8 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF7255 -0.8 -0.7 BUG/TctC family periplasmic protein compare
GFF5713 -0.8 -2.7 Flagellar basal-body P-ring formation protein FlgA compare
GFF1539 -0.8 -2.0 RsbT co-antagonist protein RsbRA compare
GFF6161 -0.8 -1.1 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF5988 -0.8 -1.0 Sensory histidine kinase BaeS compare
GFF6963 -0.8 -2.2 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) compare
GFF4352 -0.8 -1.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF7133 -0.8 -3.2 Catalase-like heme-binding protein compare
GFF815 -0.8 -1.4 COGs COG3777 compare
GFF7378 -0.8 -1.3 protein of unknown function DUF1311 compare
GFF127 -0.8 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF5914 -0.7 -1.4 hypothetical protein compare
GFF5924 -0.7 -1.0 FOG: HEAT repeat compare
GFF2231 -0.7 -1.5 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) compare
GFF6839 -0.7 -1.4 hypothetical protein compare
GFF575 -0.7 -4.7 Tol-Pal system protein TolQ compare
GFF2936 -0.7 -3.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF292 -0.7 -6.1 Tol-Pal system beta propeller repeat protein TolB compare
GFF1259 -0.7 -2.6 no description compare
GFF3624 -0.7 -5.5 Putative transmembrane protein compare
GFF1957 -0.7 -1.4 no description compare
GFF3130 -0.7 -1.9 hypothetical protein compare
GFF646 -0.7 -1.2 no description compare
GFF2262 -0.7 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF5208 -0.7 -5.0 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF1493 -0.7 -2.5 BUG/TctC family periplasmic protein compare
GFF1782 -0.7 -2.6 integral membrane sensor signal transduction histidine kinase compare
GFF3516 -0.7 -2.1 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF6294 -0.7 -2.2 Cell division protein compare
GFF7188 -0.7 -1.3 Uncharacterized methyltransferase PA1407 compare
GFF4042 -0.7 -1.7 Copper-sensing two-component system response regulator CusR compare
GFF3250 -0.7 -1.7 Barstar, ribonuclease (Barnase) inhibitor compare
GFF6168 -0.7 -0.7 Na(+) H(+) antiporter subunit G compare
GFF2429 -0.7 -1.6 putative membrane protein compare
GFF3735 -0.7 -1.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) compare
GFF1151 -0.7 -3.4 Nitrogen regulatory protein P-II compare
GFF3711 -0.7 -2.1 oxidoreductase, 2OG-Fe(II) oxygenase family compare
GFF7362 -0.7 -1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF527 -0.7 -3.3 Tricarboxylate transport sensor protein TctE compare
GFF6030 -0.7 -2.5 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF6129 -0.7 -2.8 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF6128 -0.7 -1.3 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF341 -0.7 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4332 -0.7 -2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF4668 -0.7 -1.7 hypothetical protein compare
GFF7250 -0.6 -0.7 Putative transposase InsK for insertion sequence element IS150 compare
GFF4437 -0.6 -3.5 Low-complexity acidic protein, XCC2875 type compare
GFF2844 -0.6 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF1178 -0.6 -1.3 hypothetical protein compare
GFF602 -0.6 -1.3 Transcriptional regulator, LysR family => TcuR compare
GFF3912 -0.6 -2.1 Ferrous iron transport permease EfeU compare
GFF1704 -0.6 -2.7 FIG00901292: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in no phage control experiments