Experiment set2S38 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

HMW_DNA_from_Lysinibacillus_FW301-JW8 40.7 ppm carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS13805 -2.9 -2.0 HAD family hydrolase compare
A4249_RS10295 -2.6 -1.9 hypothetical protein compare
A4249_RS16085 -2.6 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS13750 -2.3 -2.5 hypothetical protein compare
A4249_RS15150 -2.3 -2.7 hypothetical protein compare
A4249_RS04085 -2.3 -3.1 ribonuclease E/G compare
A4249_RS07610 -2.2 -2.1 methyltransferase type 11 compare
A4249_RS10480 -2.2 -2.6 DUF1190 domain-containing protein compare
A4249_RS10965 -1.8 -1.5 response regulator compare
A4249_RS01355 -1.8 -2.4 hypothetical protein compare
A4249_RS01590 -1.7 -2.0 site-specific DNA-methyltransferase compare
A4249_RS06370 -1.7 -2.3 hypothetical protein compare
A4249_RS06785 -1.6 -3.2 endolytic transglycosylase MltG compare
A4249_RS01460 -1.6 -1.6 signal peptide peptidase SppA compare
A4249_RS12795 -1.6 -1.8 DsbE family thiol:disulfide interchange protein compare
A4249_RS13125 -1.6 -2.2 ribonuclease PH compare
A4249_RS06435 -1.6 -1.6 tRNA-Asp compare
A4249_RS05620 -1.6 -6.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS11285 -1.6 -3.1 double-strand break repair protein AddB compare
A4249_RS12210 -1.5 -2.3 tyrosine recombinase XerC compare
A4249_RS08510 -1.5 -3.2 hypothetical protein compare
A4249_RS12470 -1.5 -1.8 histidinol-phosphatase compare
A4249_RS10110 -1.5 -2.2 DUF805 domain-containing protein compare
A4249_RS11125 -1.4 -7.4 glycosyltransferase family 9 protein compare
A4249_RS09605 -1.4 -1.8 DUF6468 domain-containing protein compare
A4249_RS09255 -1.3 -0.9 phosphoribosylamine--glycine ligase compare
A4249_RS03065 -1.3 -1.7 arsenate reductase (glutaredoxin) compare
A4249_RS01190 -1.3 -1.6 hypothetical protein compare
A4249_RS04080 -1.3 -3.5 M48 family metalloprotease compare
A4249_RS01325 -1.2 -1.4 hypothetical protein compare
A4249_RS07995 -1.2 -1.6 type II 3-dehydroquinate dehydratase compare
A4249_RS11560 -1.2 -1.6 peroxiredoxin compare
A4249_RS13200 -1.2 -2.3 thiamine pyrophosphate-dependent enzyme compare
A4249_RS09035 -1.1 -1.4 redox-regulated ATPase YchF compare
A4249_RS14905 -1.1 -1.9 phosphonate ABC transporter ATP-binding protein compare
A4249_RS03645 -1.1 -3.8 TonB-dependent receptor compare
A4249_RS01115 -1.0 -2.4 LysR substrate-binding domain-containing protein compare
A4249_RS12970 -1.0 -3.4 glycosyltransferase family 61 protein compare
A4249_RS05625 -1.0 -7.7 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS02865 -1.0 -2.1 arsenate reductase family protein compare
A4249_RS14255 -0.9 -1.0 ribonuclease P protein component compare
A4249_RS01010 -0.9 -4.5 capsular polysaccharide biosynthesis protein compare
A4249_RS08370 -0.9 -3.4 polysaccharide deacetylase family protein compare
A4249_RS01230 -0.9 -1.1 hypothetical protein compare
A4249_RS13760 -0.9 -1.3 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS04215 -0.9 -1.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS10105 -0.9 -1.0 DUF2460 domain-containing protein compare
A4249_RS01555 -0.9 -1.8 response regulator compare
A4249_RS10835 -0.9 -2.3 c-type cytochrome biogenesis protein CcmI compare
A4249_RS00710 -0.8 -1.9 hypothetical protein compare
A4249_RS10990 -0.8 -1.3 ATP-dependent protease ATPase subunit HslU compare
A4249_RS17065 -0.8 -2.4 methyltransferase domain-containing protein compare
A4249_RS00120 -0.8 -3.4 cytochrome c oxidase assembly protein compare
A4249_RS08380 -0.8 -2.0 RidA family protein compare
A4249_RS14135 -0.8 -1.3 ATP-binding protein compare
A4249_RS13535 -0.8 -2.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS09195 -0.8 -2.3 TldD/PmbA family protein compare
A4249_RS15110 -0.8 -1.7 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS06830 -0.7 -2.5 chorismate mutase compare
A4249_RS06165 -0.7 -2.6 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS16585 -0.7 -1.2 hypothetical protein compare
A4249_RS12305 -0.7 -2.2 glycosyltransferase family 1 protein compare
A4249_RS07445 -0.7 -1.9 hypothetical protein compare
A4249_RS09055 -0.7 -2.2 hypothetical protein compare
A4249_RS13400 -0.7 -1.8 DUF2939 domain-containing protein compare
A4249_RS15195 -0.7 -3.1 DcaP family trimeric outer membrane transporter compare
A4249_RS14895 -0.7 -1.1 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS10390 -0.7 -1.2 translation elongation factor 4 compare
A4249_RS08855 -0.7 -1.6 L,D-transpeptidase family protein compare
A4249_RS13175 -0.7 -1.1 Rrf2 family transcriptional regulator compare
A4249_RS13020 -0.7 -3.4 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS11450 -0.7 -2.9 histidinol-phosphate transaminase compare
A4249_RS09830 -0.7 -2.4 ATP-binding protein compare
A4249_RS07665 -0.7 -0.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS09840 -0.7 -2.6 pyrroline-5-carboxylate reductase dimerization domain-containing protein compare
A4249_RS11780 -0.6 -0.7 hypothetical protein compare
A4249_RS16570 -0.6 -2.3 hypothetical protein compare
A4249_RS02325 -0.6 -0.7 23S ribosomal RNA compare
A4249_RS04795 -0.6 -1.3 CinA family protein compare
A4249_RS08405 -0.6 -1.7 TIGR01841 family phasin compare
A4249_RS01235 -0.6 -1.0 hypothetical protein compare
A4249_RS10375 -0.6 -2.3 DUF1491 family protein compare
A4249_RS08905 -0.6 -1.5 M23 family metallopeptidase compare
A4249_RS02645 -0.6 -0.8 cobalamin biosynthesis protein CbiG compare
A4249_RS04960 -0.6 -1.5 UvrD-helicase domain-containing protein compare
A4249_RS12275 -0.6 -2.2 cobaltochelatase subunit CobT compare
A4249_RS13195 -0.6 -1.9 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS06580 -0.6 -1.7 HWE histidine kinase domain-containing protein compare
A4249_RS15865 -0.6 -0.9 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS14825 -0.6 -2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS06880 -0.6 -0.7 hypothetical protein compare
A4249_RS12860 -0.6 -1.0 DUF350 domain-containing protein compare
A4249_RS09335 -0.6 -3.5 aminomethyl-transferring glycine dehydrogenase subunit GcvPA compare
A4249_RS14900 -0.6 -2.7 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS02570 -0.6 -3.6 cytochrome c1 compare
A4249_RS06895 -0.6 -1.8 hypothetical protein compare
A4249_RS13450 -0.6 -1.4 PilZ domain-containing protein compare
A4249_RS08535 -0.6 -0.9 flagellar assembly protein FliX compare
A4249_RS15485 -0.6 -2.0 biliverdin-producing heme oxygenase compare
A4249_RS14065 -0.6 -1.5 MFS transporter compare
A4249_RS07105 -0.6 -0.8 hypothetical protein compare
A4249_RS09315 -0.6 -1.5 class 1 fructose-bisphosphatase compare
A4249_RS05390 -0.6 -1.7 SOS response-associated peptidase family protein compare
A4249_RS10720 -0.5 -3.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
A4249_RS15275 -0.5 -1.7 peptide chain release factor 3 compare
A4249_RS07090 -0.5 -2.2 hypothetical protein compare
A4249_RS08550 -0.5 -1.3 flagellar basal-body protein FlbY compare
A4249_RS10035 -0.5 -2.5 hypothetical protein compare
A4249_RS03670 -0.5 -1.1 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS01725 -0.5 -1.3 hypothetical protein compare
A4249_RS09510 -0.5 -2.1 ribonuclease HII compare
A4249_RS05800 -0.5 -1.1 MerC domain-containing protein compare
A4249_RS10690 -0.5 -2.9 ATP phosphoribosyltransferase compare
A4249_RS01610 -0.5 -0.5 TetR/AcrR family transcriptional regulator compare
A4249_RS09285 -0.5 -1.8 Tat pathway signal sequence domain protein compare
A4249_RS15205 -0.5 -3.5 PAS-domain containing protein compare
A4249_RS00975 -0.5 -2.4 DUF559 domain-containing protein compare
A4249_RS00895 -0.5 -1.0 DUF1476 domain-containing protein compare
A4249_RS07920 -0.5 -1.8 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS17075 -0.5 -0.7 energy transducer TonB compare
A4249_RS11920 -0.5 -3.2 ornithine carbamoyltransferase compare
A4249_RS14550 -0.5 -2.2 AMP nucleosidase compare
A4249_RS08425 -0.5 -1.5 class I SAM-dependent RNA methyltransferase compare
A4249_RS05340 -0.5 -1.4 helix-hairpin-helix domain-containing protein compare
A4249_RS15570 -0.5 -1.8 chemotaxis protein CheW compare
A4249_RS14875 -0.5 -1.4 benzoate/H(+) symporter BenE family transporter compare
A4249_RS16125 -0.5 -2.5 glutamate 5-kinase compare
A4249_RS07305 -0.5 -0.7 UPF0262 family protein compare
A4249_RS05845 -0.5 -0.7 sigma-70 family RNA polymerase sigma factor compare
A4249_RS05595 -0.5 -1.2 dicarboxylate/amino acid:cation symporter compare
A4249_RS13030 -0.5 -3.1 glycosyltransferase family 1 protein compare
A4249_RS10005 -0.5 -3.7 3-isopropylmalate dehydratase large subunit compare
A4249_RS14025 -0.5 -0.8 CHAP domain-containing protein compare
A4249_RS05370 -0.5 -1.6 DNA polymerase Y family protein compare
A4249_RS13070 -0.5 -3.3 phosphomannomutase/phosphoglucomutase compare
A4249_RS05465 -0.5 -1.6 ABC transporter ATP-binding protein compare
A4249_RS15360 -0.5 -0.8 DNA replication/repair protein RecF compare
A4249_RS12965 -0.5 -3.1 acetylglutamate kinase compare
A4249_RS11730 -0.5 -1.8 DUF305 domain-containing protein compare
A4249_RS10820 -0.5 -0.8 cytochrome c-type biogenesis protein CcmH compare
A4249_RS07930 -0.5 -2.9 homocysteine S-methyltransferase family protein compare
A4249_RS04725 -0.4 -2.4 acyl-CoA dehydrogenase compare
A4249_RS00290 -0.4 -0.7 histidine phosphatase family protein compare
A4249_RS05900 -0.4 -0.9 hypothetical protein compare
A4249_RS08390 -0.4 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
A4249_RS12400 -0.4 -0.5 hypothetical protein compare
A4249_RS16105 -0.4 -3.6 glutamate synthase large subunit compare
A4249_RS03115 -0.4 -0.6 signal peptidase II compare
A4249_RS11640 -0.4 -1.5 hypothetical protein compare
A4249_RS06665 -0.4 -0.6 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS14835 -0.4 -1.8 S41 family peptidase compare
A4249_RS16995 -0.4 -3.1 phosphoglycerate dehydrogenase compare
A4249_RS16150 -0.4 -0.7 hypothetical protein compare
A4249_RS14275 -0.4 -3.5 argininosuccinate synthase compare
A4249_RS13590 -0.4 -1.9 [protein-PII] uridylyltransferase compare
A4249_RS12825 -0.4 -0.9 SDR family oxidoreductase compare
A4249_RS12150 -0.4 -1.5 PTS sugar transporter subunit IIA compare
A4249_RS09490 -0.4 -1.9 response regulator compare
A4249_RS14395 -0.4 -1.1 hypothetical protein compare
A4249_RS14205 -0.4 -0.7 response regulator compare
A4249_RS09275 -0.4 -1.5 DUF3035 domain-containing protein compare
A4249_RS16455 -0.4 -0.5 helix-turn-helix transcriptional regulator compare
A4249_RS05635 -0.4 -2.0 SPFH/Band 7/PHB domain protein compare
A4249_RS04480 -0.4 -1.4 HIT family protein compare
A4249_RS07950 -0.4 -1.9 hypothetical protein compare
A4249_RS10700 -0.4 -2.2 imidazoleglycerol-phosphate dehydratase HisB compare
A4249_RS05000 -0.4 -1.6 YccF domain-containing protein compare
A4249_RS05590 -0.4 -1.1 amino acid ABC transporter substrate-binding protein compare
A4249_RS16745 -0.4 -1.0 DUF2252 family protein compare
A4249_RS14445 -0.4 -0.8 hypothetical protein compare
A4249_RS09995 -0.4 -2.7 3-isopropylmalate dehydrogenase compare
A4249_RS12545 -0.4 -2.5 diaminopimelate decarboxylase compare
A4249_RS16110 -0.4 -2.0 NAD(P)-dependent oxidoreductase compare
A4249_RS09095 -0.4 -2.6 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
A4249_RS13060 -0.4 -2.9 AGE family epimerase/isomerase compare
A4249_RS10060 -0.4 -1.7 RluA family pseudouridine synthase compare
A4249_RS06180 -0.4 -1.2 transcriptional repressor LexA compare
A4249_RS04210 -0.4 -1.4 TMEM175 family protein compare
A4249_RS00740 -0.4 -1.8 HAD family hydrolase compare
A4249_RS05790 -0.4 -1.5 transmembrane anchor protein compare
A4249_RS12260 -0.4 -0.8 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS07000 -0.4 -1.9 hypothetical protein compare
A4249_RS06550 -0.4 -1.3 chorismate mutase compare
A4249_RS06155 -0.4 -1.4 anthranilate synthase component I compare
A4249_RS12855 -0.4 -1.7 serine protease compare
A4249_RS04485 -0.4 -0.5 phage holin family protein compare
A4249_RS14805 -0.4 -1.3 Fur family transcriptional regulator compare
A4249_RS02295 -0.4 -1.6 holdfast anchoring protein HfaA compare
A4249_RS05165 -0.4 -1.3 Hpt domain-containing protein compare
A4249_RS13025 -0.4 -2.9 hypothetical protein compare
A4249_RS04345 -0.4 -1.2 glycosyltransferase family A protein compare
A4249_RS15190 -0.4 -3.3 acetate--CoA ligase compare
A4249_RS02565 -0.4 -2.7 cytochrome b N-terminal domain-containing protein compare
A4249_RS13800 -0.4 -3.6 AGE family epimerase/isomerase compare
A4249_RS03570 -0.4 -0.9 TonB family protein compare
A4249_RS15290 -0.4 -3.0 malate synthase G compare
A4249_RS12555 -0.4 -2.5 argininosuccinate lyase compare
A4249_RS15065 -0.4 -2.5 SCO family protein compare
A4249_RS08685 -0.4 -1.2 hypothetical protein compare
A4249_RS15660 -0.4 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source HMW_DNA_from_Lysinibacillus_FW301-JW8 across organisms