Experiment set2S379 for Variovorax sp. SCN45

Compare to:

no phage control

200 most important genes:

  gene name fitness t score description  
GFF239 -4.3 -3.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6512 -4.1 -2.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF2835 -3.8 -2.6 putative TonB-dependent receptor compare
GFF4748 -3.7 -3.5 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF5307 -3.5 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF2836 -3.3 -3.9 MotA/TolQ/ExbB proton channel family protein compare
GFF6328 -2.8 -2.1 LPS-assembly lipoprotein LptE compare
GFF5065 -2.7 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF944 -2.6 -3.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3928 -2.6 -2.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF3888 -2.6 -6.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF255 -2.5 -2.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF3889 -2.5 -2.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3890 -2.4 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2627 -2.4 -5.1 Chorismate synthase (EC 4.2.3.5) compare
GFF1105 -2.3 -3.7 Helicase compare
GFF5513 -2.2 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1324 -2.2 -3.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF489 -2.2 -6.0 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3651 -2.2 -2.5 PTS system, IIA component compare
GFF5325 -2.2 -2.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF5424 -2.2 -1.7 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF3600 -2.2 -3.5 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF240 -2.1 -11.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF6700 -2.1 -3.7 Single-stranded-DNA-specific exonuclease RecJ compare
GFF6042 -2.1 -4.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5324 -2.0 -3.0 Shikimate kinase I (EC 2.7.1.71) compare
GFF1119 -1.9 -5.4 Ribonuclease HI (EC 3.1.26.4) compare
GFF7295 -1.9 -4.4 HPr kinase/phosphorylase compare
GFF5876 -1.8 -7.8 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF2734 -1.8 -6.7 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF4447 -1.7 -7.6 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF6036 -1.7 -6.7 DNA translocase FtsK compare
GFF4557 -1.6 -4.9 Dihydroorotase (EC 3.5.2.3) compare
GFF2730 -1.6 -3.4 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF6246 -1.6 -5.4 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3960 -1.6 -7.4 3'-to-5' oligoribonuclease (orn) compare
GFF4454 -1.6 -5.7 Exoribonuclease II (EC 3.1.13.1) compare
GFF232 -1.6 -7.4 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF3089 -1.6 -2.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5512 -1.5 -2.7 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF968 -1.5 -2.6 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5734 -1.5 -2.2 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF2142 -1.5 -1.7 Glutathione S-transferase (EC 2.5.1.18) compare
GFF2838 -1.5 -2.4 hypothetical protein compare
GFF1756 -1.5 -1.9 hypothetical protein compare
GFF1984 -1.5 -2.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF3941 -1.5 -1.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2804 -1.4 -2.6 Membrane protein compare
GFF302 -1.4 -1.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF5509 -1.4 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF219 -1.4 -4.3 GTP-binding protein TypA/BipA compare
GFF20 -1.4 -1.8 hypothetical protein compare
GFF5877 -1.4 -4.1 Probable proline rich signal peptide protein compare
GFF2343 -1.4 -5.6 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF799 -1.3 -1.9 Rrf2 family transcriptional regulator, group III compare
GFF6294 -1.3 -3.9 Cell division protein compare
GFF3152 -1.3 -3.1 hypothetical protein compare
GFF7184 -1.3 -2.3 hypothetical protein compare
GFF2236 -1.3 -1.3 hypothetical protein compare
GFF487 -1.3 -8.1 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF409 -1.3 -5.1 Osmolarity sensory histidine kinase EnvZ compare
GFF966 -1.3 -6.1 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF339 -1.3 -3.1 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF7294 -1.3 -2.9 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF5036 -1.3 -4.3 Opine oxidase subunit B compare
GFF2273 -1.3 -3.7 Transcriptional regulator, AcrR family compare
GFF6184 -1.3 -2.5 hypothetical protein compare
GFF5666 -1.2 -3.6 Prevent host death protein, Phd antitoxin compare
GFF431 -1.2 -2.5 Esterase/lipase compare
GFF2949 -1.2 -1.9 no description compare
GFF2515 -1.2 -2.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF2173 -1.2 -1.2 no description compare
GFF1106 -1.2 -2.5 UvrD/REP helicase compare
GFF5896 -1.2 -5.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3649 -1.2 -7.9 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF3905 -1.1 -4.0 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF372 -1.1 -5.8 PMID: 11481431 compare
GFF3870 -1.1 -4.4 Ribonuclease III (EC 3.1.26.3) compare
GFF2341 -1.1 -1.6 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF6876 -1.1 -8.7 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF967 -1.1 -8.8 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2090 -1.1 -2.8 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF577 -1.1 -2.4 TolA protein compare
GFF2109 -1.1 -2.4 FIG00454067: hypothetical protein compare
GFF5383 -1.1 -1.8 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF6324 -1.1 -8.5 Kup system potassium uptake protein compare
GFF5118 -1.1 -2.9 gluconolactonase family protein compare
GFF497 -1.1 -5.0 Phytoene synthase (EC 2.5.1.32) compare
GFF7221 -1.1 -2.1 Protein lysine acetyltransferase Pat (EC 2.3.1.-) compare
GFF5057 -1.0 -9.0 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF4192 -1.0 -1.2 no description compare
GFF408 -1.0 -1.2 Two-component system response regulator OmpR compare
GFF2523 -1.0 -2.6 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF6875 -1.0 -5.3 hypothetical protein compare
GFF3952 -1.0 -2.8 LSU ribosomal protein L19p compare
GFF3114 -1.0 -1.8 Methionine ABC transporter ATP-binding protein compare
GFF3790 -1.0 -3.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF1957 -1.0 -1.8 no description compare
GFF4145 -1.0 -1.3 transcriptional regulators-like protein compare
GFF5941 -1.0 -1.3 hypothetical protein compare
GFF5049 -1.0 -1.2 NAD-dependent protein deacetylase of SIR2 family compare
GFF213 -1.0 -2.9 tmRNA-binding protein SmpB compare
GFF4346 -1.0 -1.5 no description compare
GFF3624 -1.0 -6.8 Putative transmembrane protein compare
GFF2344 -0.9 -2.5 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF7321 -0.9 -1.1 Sensor histidine kinase GlrK compare
GFF3250 -0.9 -2.2 Barstar, ribonuclease (Barnase) inhibitor compare
GFF3265 -0.9 -2.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF4000 -0.9 -4.1 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF5981 -0.9 -1.1 COGs COG3558 compare
GFF6878 -0.9 -7.3 hypothetical protein compare
GFF5267 -0.9 -2.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2847 -0.9 -1.6 histone-like nucleoid-structuring protein H-NS compare
GFF272 -0.9 -1.3 thioesterase superfamily protein compare
GFF341 -0.9 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4878 -0.9 -2.1 putative lipoprotein compare
GFF959 -0.9 -1.8 Phage holin compare
GFF2463 -0.9 -1.1 Response regulator BaeR compare
GFF6129 -0.9 -3.7 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF1159 -0.9 -4.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF6366 -0.9 -2.5 T6SS component TssG (ImpH/VasB) compare
GFF2853 -0.8 -2.2 DNA-binding protein HU-beta compare
GFF2227 -0.8 -2.0 Tricarboxylate transport protein TctC compare
GFF5798 -0.8 -1.2 hypothetical protein compare
GFF5208 -0.8 -6.1 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF212 -0.8 -5.2 Ribosome association toxin RatA compare
GFF1530 -0.8 -2.3 Nucleoside-diphosphate-sugar epimerases compare
GFF5841 -0.8 -1.2 Auxin efflux carrier family protein compare
GFF6428 -0.8 -1.5 Glyoxalase/bleomycin resistance protein/dioxygenase compare
GFF990 -0.8 -3.7 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF4099 -0.8 -1.8 Ser/Thr protein phosphatase family protein compare
GFF646 -0.8 -1.8 no description compare
GFF399 -0.8 -6.6 3'-to-5' exoribonuclease RNase R compare
GFF4322 -0.8 -1.4 Acyl-CoA dehydrogenase compare
GFF970 -0.8 -5.3 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF5914 -0.8 -1.6 hypothetical protein compare
GFF3177 -0.8 -1.3 hypothetical protein compare
GFF2708 -0.8 -1.8 no description compare
GFF5534 -0.8 -2.2 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF6930 -0.8 -2.1 no description compare
GFF1644 -0.8 -1.2 hypothetical protein compare
GFF694 -0.8 -1.5 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) compare
GFF4332 -0.8 -2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF5246 -0.8 -5.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF4203 -0.8 -1.4 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF303 -0.8 -2.6 Probable transcriptional regulatory protein YebC compare
GFF4839 -0.7 -1.5 Transcriptional regulator PA2737, MerR family compare
GFF5755 -0.7 -3.2 Flagellar biosynthesis protein FliS compare
GFF3892 -0.7 -1.2 no description compare
GFF5713 -0.7 -2.5 Flagellar basal-body P-ring formation protein FlgA compare
GFF3320 -0.7 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF5958 -0.7 -2.0 FIG00537018: hypothetical protein compare
GFF6008 -0.7 -1.7 Citrate synthase (si) (EC 2.3.3.1) compare
GFF371 -0.7 -1.5 RNA-binding protein YhbY compare
GFF3425 -0.7 -1.4 no description compare
GFF4492 -0.7 -4.1 Protein of unknown function DUF484 compare
GFF2239 -0.7 -1.0 no description compare
GFF2380 -0.7 -2.1 Protein phosphatase 2C-like compare
GFF6592 -0.7 -1.9 hypothetical protein compare
GFF292 -0.7 -5.7 Tol-Pal system beta propeller repeat protein TolB compare
GFF2926 -0.7 -3.0 FIG00349048: hypothetical protein compare
GFF576 -0.7 -2.4 Tol biopolymer transport system, TolR protein compare
GFF7199 -0.7 -2.3 Alkanesulfonates-binding protein compare
GFF5491 -0.7 -2.9 Peptide deformylase (EC 3.5.1.88) compare
GFF2342 -0.7 -2.6 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1559 -0.7 -1.2 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF2715 -0.7 -2.0 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
GFF2844 -0.7 -3.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4790 -0.7 -3.3 Nudix-related transcriptional regulator NrtR compare
GFF5035 -0.7 -4.4 Opine oxidase subunit A compare
GFF2801 -0.7 -3.8 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF6290 -0.7 -5.8 RNA polymerase sigma-54 factor RpoN compare
GFF6174 -0.7 -0.8 Fluoride ion transporter CrcB compare
GFF4304 -0.7 -2.3 Cyclohexanecarboxylate--CoA ligase compare
GFF1892 -0.7 -1.5 no description compare
GFF6194 -0.7 -2.1 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF3048 -0.7 -0.8 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) compare
GFF488 -0.6 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF5839 -0.6 -1.1 no description compare
GFF5330 -0.6 -2.4 no description compare
GFF1966 -0.6 -4.4 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF2936 -0.6 -3.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF7185 -0.6 -2.1 no description compare
GFF4462 -0.6 -1.2 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF1259 -0.6 -2.4 no description compare
GFF233 -0.6 -2.1 Putative activity regulator of membrane protease YbbK compare
GFF6950 -0.6 -1.7 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF84 -0.6 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF2578 -0.6 -3.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF4710 -0.6 -1.1 MutT/Nudix family protein compare
GFF1355 -0.6 -1.3 Transcriptional regulator, LysR family compare
GFF509 -0.6 -2.2 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF575 -0.6 -4.0 Tol-Pal system protein TolQ compare
GFF5815 -0.6 -1.3 Uncharacterized MFS-type transporter compare
GFF1535 -0.6 -1.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3121 -0.6 -1.5 hypothetical protein compare
GFF4644 -0.6 -1.4 no description compare
GFF838 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in no phage control experiments