Experiment set2S379 for Variovorax sp. SCN45

Compare to:

no phage control

200 most detrimental genes:

  gene name fitness t score description  
GFF733 +1.2 2.2 no description compare
GFF1364 +1.2 3.8 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
GFF7279 +1.0 2.0 no description compare
GFF3374 +1.0 1.5 no description compare
GFF4348 +0.9 2.8 hypothetical protein compare
GFF5919 +0.9 1.4 KEGG: type VI secretion system secreted protein Hcp compare
GFF3384 +0.9 2.9 Transcriptional regulator, Crp/Fnr family compare
GFF784 +0.8 1.0 KEGG: RNA polymerase sigma-70 factor, ECF subfamily compare
GFF7195 +0.8 2.4 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
GFF2659 +0.8 2.5 Electron transfer flavoprotein, alpha subunit compare
GFF618 +0.8 2.2 Lactoylglutathione lyase and related lyases compare
GFF4106 +0.8 1.6 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF6990 +0.7 1.4 hypothetical protein compare
GFF4282 +0.7 2.1 BUG/TctC family periplasmic protein compare
GFF4347 +0.7 2.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF5739 +0.7 1.1 Flagellar biosynthesis protein FliQ compare
GFF2186 +0.7 2.1 no description compare
GFF7300 +0.7 1.2 Biopolymer transport protein ExbD/TolR compare
GFF396 +0.7 1.6 hypothetical protein compare
GFF2557 +0.7 1.8 transport-associated compare
GFF4954 +0.7 0.9 no description compare
GFF2562 +0.7 1.3 UPF0391 membrane protein RGE_28580 compare
GFF6959 +0.7 0.9 Putative analog of CcoH, COG3198 compare
GFF4877 +0.7 1.7 no description compare
GFF5721 +0.7 1.8 Flagellar L-ring protein FlgH compare
GFF3448 +0.7 2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF3460 +0.7 2.0 Urea ABC transporter, ATPase protein UrtE compare
GFF4903 +0.7 1.1 no description compare
GFF1449 +0.7 3.0 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) compare
GFF7245 +0.6 1.3 universal stress protein, UspA family compare
GFF198 +0.6 2.2 Isochorismate pyruvate-lyase (EC 4.2.99.21) compare
GFF1490 +0.6 2.2 Transcriptional regulator, LysR family compare
GFF6360 +0.6 1.4 FIG00432660: hypothetical protein compare
GFF81 +0.6 2.5 Bll6900 protein compare
GFF1156 +0.6 1.8 Putative transmembrane protein compare
GFF3736 +0.6 1.3 UPF0102 protein YraN compare
GFF3510 +0.6 1.3 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF4027 +0.6 2.2 hypothetical protein compare
GFF6946 +0.6 3.7 Sensory box histidine kinase/response regulator compare
GFF3327 +0.6 1.5 RidA/YER057c/UK114 superfamily, group 1 compare
GFF2423 +0.6 2.8 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
GFF850 +0.6 2.4 Two-component transcriptional response regulator, LuxR family compare
GFF1051 +0.6 1.4 no description compare
GFF2332 +0.6 2.1 Transcriptional regulator, LysR family compare
GFF3485 +0.6 2.2 Ferredoxin, 2Fe-2S compare
GFF5301 +0.6 2.2 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF1971 +0.6 1.2 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF5743 +0.6 1.8 Flagellar motor switch protein FliM compare
GFF7336 +0.6 1.9 Alkanesulfonate utilization operon LysR-family regulator Cbl compare
GFF6998 +0.6 1.3 Flagellar basal-body rod protein FlgB compare
GFF502 +0.6 1.6 Hydrolase compare
GFF1524 +0.6 2.0 FIG006045: Sigma factor, ECF subfamily compare
GFF6999 +0.6 0.9 Flagellar P-ring protein FlgI compare
GFF6206 +0.6 1.6 Transcriptional regulator, GntR family compare
GFF1529 +0.6 1.0 Transcriptional regulator, AcrR family compare
GFF3806 +0.6 2.0 Putative ring-cleaving dioxygenase compare
GFF5532 +0.6 2.3 Putative oxidoreductase compare
GFF4063 +0.6 1.4 Cytochrome c family protein compare
GFF4309 +0.6 1.6 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF7370 +0.6 1.5 PAS domain with LuxR-type DNA-binding domain compare
GFF680 +0.5 1.2 RecA/RadA recombinase compare
GFF2664 +0.5 1.3 FIG002343: hypothetical protein compare
GFF1356 +0.5 1.3 Putative manganese efflux pump MntP compare
GFF1306 +0.5 1.4 no description compare
GFF5075 +0.5 1.4 Two-component system sensor histidine kinase Dtpsy_0212 compare
GFF6986 +0.5 0.8 hypothetical protein compare
GFF3239 +0.5 2.2 no description compare
GFF7254 +0.5 2.1 Mannonate dehydratase (EC 4.2.1.8) compare
GFF638 +0.5 2.6 Two-component transcriptional response regulator, LuxR family compare
GFF466 +0.5 1.6 hypothetical protein compare
GFF7202 +0.5 1.7 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF3038 +0.5 1.7 hypothetical protein compare
GFF4018 +0.5 1.7 Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family compare
GFF6555 +0.5 1.0 no description compare
GFF6349 +0.5 2.1 no description compare
GFF2971 +0.5 1.5 Transcriptional regulator, LysR family compare
GFF4560 +0.5 0.9 hypothetical protein compare
GFF4364 +0.5 1.4 Transcriptional regulator, LysR family compare
GFF2177 +0.5 1.2 no description compare
GFF3573 +0.5 1.7 Efflux ABC transporter, ATP-binding protein compare
GFF3204 +0.5 1.7 no description compare
GFF4160 +0.5 2.0 Demethylmenaquinone methyltransferase-like protein compare
GFF3345 +0.5 1.8 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), glycolate utilization compare
GFF2492 +0.5 2.0 BUG/TctC family periplasmic protein compare
GFF4296 +0.5 2.0 hypothetical protein compare
GFF5762 +0.5 1.5 Flagellar motor rotation protein MotB compare
GFF6081 +0.5 2.4 Peptidase S1 and S6, chymotrypsin/Hap compare
GFF5828 +0.5 1.8 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF1498 +0.5 2.1 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF5606 +0.5 2.1 Xylose-responsive transcription regulator, ROK family compare
GFF5475 +0.5 1.5 Uncharacterized MFS-type transporter compare
GFF4847 +0.5 1.2 Conjugative transfer protein TrbD compare
GFF1925 +0.5 1.3 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
GFF1404 +0.5 1.6 hypothetical protein compare
GFF5091 +0.5 1.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
GFF4792 +0.5 1.3 PhnB protein compare
GFF4585 +0.5 1.5 hypothetical protein compare
GFF7059 +0.5 1.0 Zinc uptake regulation protein Zur compare
GFF455 +0.5 1.8 Uncharacterized UPF0721 integral membrane protein compare
GFF7043 +0.5 1.2 Putative transmembrane protein compare
GFF4120 +0.5 1.2 no description compare
GFF6357 +0.5 1.5 T6SS forkhead associated domain protein ImpI/VasC compare
GFF6730 +0.4 2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF7261 +0.4 0.6 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) compare
GFF5386 +0.4 0.9 hypothetical protein compare
GFF7266 +0.4 0.9 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) compare
GFF7178 +0.4 1.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF6015 +0.4 0.7 Transcriptional regulator PA0877, LysR family compare
GFF2221 +0.4 2.3 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4215 +0.4 0.9 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ compare
GFF839 +0.4 1.3 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) compare
GFF2821 +0.4 2.0 Hemin ABC transporter, permease protein compare
GFF7010 +0.4 1.5 no description compare
GFF1262 +0.4 0.6 Rhodanese-related sulfurtransferase compare
GFF4773 +0.4 1.6 Broad-specificity amino acid ABC transporter, ATP-binding protein 1 compare
GFF933 +0.4 2.2 YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA compare
GFF5293 +0.4 1.9 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
GFF6669 +0.4 1.7 hypothetical protein compare
GFF1190 +0.4 1.6 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF449 +0.4 1.6 Cobyrinic acid a,c-diamide synthetase (EC 6.3.5.11) compare
GFF1264 +0.4 1.4 Transcriptional regulator, Xre family compare
GFF2416 +0.4 1.4 Transcriptional regulator YbhD, LysR family compare
GFF6924 +0.4 1.7 protein of unknown function DUF485 compare
GFF1788 +0.4 0.9 hypothetical protein compare
GFF617 +0.4 1.2 no description compare
GFF4623 +0.4 1.8 Transcriptional regulator, AcrR family compare
GFF62 +0.4 2.1 hypothetical protein compare
GFF274 +0.4 1.7 Probable RNA methyltransferase PA1839 compare
GFF3289 +0.4 3.2 Putative phosphoesterase compare
GFF4593 +0.4 3.4 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) compare
GFF1893 +0.4 2.0 FIG00466861: hypothetical protein compare
GFF2654 +0.4 2.0 Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydC subunit compare
GFF5690 +0.4 1.6 Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4) compare
GFF3702 +0.4 0.7 Beta-propeller domains of methanol dehydrogenase type compare
GFF4092 +0.4 1.0 Copper tolerance protein compare
GFF7016 +0.4 0.9 FAD-dependent oxidoreductase compare
GFF5921 +0.4 0.7 T6SS protein serine/threonine phosphatase PppA compare
GFF2111 +0.4 1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF1582 +0.4 1.5 BUG/TctC family periplasmic protein compare
GFF6197 +0.4 1.2 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF1298 +0.4 2.1 Cell division protein compare
GFF3444 +0.4 1.8 BUG/TctC family periplasmic protein compare
GFF4187 +0.4 1.2 hypothetical protein compare
GFF4724 +0.4 1.6 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF4112 +0.4 0.7 Rhodanese-related sulfurtransferase, 4 domains compare
GFF6475 +0.4 1.1 hypothetical protein compare
GFF362 +0.4 2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3393 +0.4 2.2 Benzoate ABC transporter, ATP-binding protein 2 compare
GFF4091 +0.4 0.6 Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4) compare
GFF4355 +0.4 2.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
GFF7250 +0.4 0.6 Putative transposase InsK for insertion sequence element IS150 compare
GFF1195 +0.4 3.0 iron-sulphur protein compare
GFF3259 +0.4 2.7 Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23) compare
GFF7044 +0.4 1.0 Inner membrane protein YedI compare
GFF4622 +0.4 1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4843 +0.4 1.6 Conjugative transfer protein TrbF compare
GFF1398 +0.4 1.9 Transcriptional regulator, LacI family compare
GFF1770 +0.4 1.5 cytidine/deoxycytidylate deaminase family protein compare
GFF5631 +0.4 1.4 DNA-binding domain of ModE compare
GFF930 +0.4 2.3 Transcriptional regulator, GntR family compare
GFF4217 +0.4 1.7 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) compare
GFF3511 +0.4 1.4 no description compare
GFF7192 +0.4 2.0 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1210 +0.4 1.5 D-aminopeptidase dipeptide-binding protein DppA (EC 3.4.11.-) compare
GFF2474 +0.4 1.6 Two-component transcriptional response regulator SMc02366, LuxR family compare
GFF1588 +0.4 2.0 Serine phosphatase RsbU, regulator of sigma subunit compare
GFF4290 +0.4 1.9 MaoC-like dehydratase compare
GFF2001 +0.4 1.9 Putative phosphatase YieH compare
GFF7230 +0.4 1.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
GFF1834 +0.4 1.6 BUG/TctC family periplasmic protein compare
GFF6083 +0.4 1.1 hypothetical protein PA3071 compare
GFF674 +0.4 0.7 no description compare
GFF7069 +0.4 1.2 Transcriptional regulator compare
GFF4259 +0.4 0.9 Transcriptional regulator, DeoR family compare
GFF443 +0.4 0.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
GFF7378 +0.4 0.7 protein of unknown function DUF1311 compare
GFF5742 +0.4 1.3 Flagellar motor switch protein FliN compare
GFF2447 +0.4 2.5 beta-lactamase-like protein compare
GFF4060 +0.4 1.0 hypothetical protein compare
GFF3446 +0.4 1.7 Quinone oxidoreductase (EC 1.6.5.5) compare
GFF5098 +0.4 1.5 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
GFF683 +0.4 1.8 Transcriptional regulator, LysR family compare
GFF214 +0.4 2.4 Putative transmembrane protein compare
GFF3507 +0.4 2.6 Transcriptional regulator, DeoR family compare
GFF4924 +0.4 1.1 Transmembrane component BioN of energizing module of biotin ECF transporter compare
GFF885 +0.4 1.0 Transcriptional regulator, LysR family compare
GFF1278 +0.4 2.4 no description compare
GFF5662 +0.4 1.3 no description compare
GFF3039 +0.4 0.9 Two-component transcriptional response regulator, LuxR family compare
GFF7036 +0.4 1.4 LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) compare
GFF3609 +0.4 1.5 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4621 +0.4 1.6 Hydroxycarboxylate dehydrogenase (NADP+) HcxB compare
GFF4231 +0.4 1.3 no description compare
GFF6440 +0.4 1.0 Molybdate-binding domain of ModE compare
GFF5186 +0.4 1.6 hypothetical protein compare
GFF6379 +0.4 1.0 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF6207 +0.4 0.6 Allantoin racemase (EC 5.1.99.3) compare
GFF5506 +0.3 2.5 Transcriptional regulator Bmul_5214, AsnC family compare
GFF5751 +0.3 1.5 Flagellar hook-basal body complex protein FliE compare
GFF124 +0.3 1.5 Beta-ureidopropionase (EC 3.5.1.6) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in no phage control experiments