Experiment set2S377 for Variovorax sp. SCN45

Compare to:

no phage control

200 most important genes:

  gene name fitness t score description  
GFF2836 -3.7 -3.6 MotA/TolQ/ExbB proton channel family protein compare
GFF3890 -3.4 -2.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2835 -3.4 -4.0 putative TonB-dependent receptor compare
GFF944 -3.2 -3.1 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF239 -3.1 -3.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF5512 -2.9 -2.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5424 -2.9 -2.5 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF3889 -2.8 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1756 -2.8 -2.7 hypothetical protein compare
GFF5065 -2.8 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3888 -2.7 -6.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF255 -2.3 -3.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5513 -2.3 -3.1 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF5523 -2.3 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF3952 -2.2 -4.4 LSU ribosomal protein L19p compare
GFF5307 -2.2 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF489 -2.2 -6.5 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3089 -2.1 -2.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF7295 -2.1 -5.0 HPr kinase/phosphorylase compare
GFF2734 -2.1 -7.5 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF3941 -2.1 -2.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF5325 -2.0 -2.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF7294 -2.0 -4.0 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF4557 -2.0 -5.1 Dihydroorotase (EC 3.5.2.3) compare
GFF5324 -2.0 -3.2 Shikimate kinase I (EC 2.7.1.71) compare
GFF6042 -2.0 -5.0 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1105 -2.0 -3.9 Helicase compare
GFF968 -2.0 -3.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5877 -1.9 -4.9 Probable proline rich signal peptide protein compare
GFF6512 -1.9 -2.5 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF2627 -1.9 -4.8 Chorismate synthase (EC 4.2.3.5) compare
GFF2730 -1.9 -4.1 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF302 -1.9 -2.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF6700 -1.8 -3.6 Single-stranded-DNA-specific exonuclease RecJ compare
GFF3960 -1.8 -8.6 3'-to-5' oligoribonuclease (orn) compare
GFF6036 -1.8 -7.4 DNA translocase FtsK compare
GFF3928 -1.8 -2.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF3600 -1.8 -3.4 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5876 -1.8 -7.9 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF240 -1.7 -8.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF4454 -1.7 -6.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF4352 -1.7 -2.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF1984 -1.7 -3.3 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF371 -1.7 -3.2 RNA-binding protein YhbY compare
GFF409 -1.6 -5.9 Osmolarity sensory histidine kinase EnvZ compare
GFF4462 -1.6 -2.4 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF339 -1.6 -3.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF3510 -1.6 -2.1 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF1119 -1.6 -5.1 Ribonuclease HI (EC 3.1.26.4) compare
GFF3352 -1.6 -1.8 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF966 -1.5 -7.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF2523 -1.5 -3.4 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF232 -1.5 -7.4 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF4000 -1.5 -6.1 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF5509 -1.5 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF219 -1.5 -4.5 GTP-binding protein TypA/BipA compare
GFF487 -1.5 -9.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2838 -1.5 -2.4 hypothetical protein compare
GFF431 -1.5 -3.1 Esterase/lipase compare
GFF3584 -1.4 -2.1 hypothetical protein compare
GFF2815 -1.4 -2.7 Primosomal replication protein N compare
GFF372 -1.4 -6.5 PMID: 11481431 compare
GFF4748 -1.4 -2.3 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF1106 -1.4 -3.1 UvrD/REP helicase compare
GFF3980 -1.4 -2.0 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-) compare
GFF2343 -1.4 -5.6 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF967 -1.4 -10.5 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5383 -1.3 -2.9 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF3905 -1.3 -4.9 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF4447 -1.3 -7.2 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF5333 -1.3 -1.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3651 -1.3 -1.3 PTS system, IIA component compare
GFF2104 -1.2 -2.1 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) compare
GFF3649 -1.2 -8.5 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF4305 -1.2 -1.5 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF2804 -1.2 -2.3 Membrane protein compare
GFF5666 -1.2 -3.6 Prevent host death protein, Phd antitoxin compare
GFF865 -1.2 -1.7 hypothetical protein compare
GFF408 -1.2 -1.9 Two-component system response regulator OmpR compare
GFF3369 -1.2 -1.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF3749 -1.2 -1.4 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF1324 -1.2 -2.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF497 -1.1 -5.5 Phytoene synthase (EC 2.5.1.32) compare
GFF2090 -1.1 -3.1 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF6328 -1.1 -1.3 LPS-assembly lipoprotein LptE compare
GFF3870 -1.1 -4.6 Ribonuclease III (EC 3.1.26.3) compare
GFF4107 -1.1 -1.6 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF4839 -1.1 -2.1 Transcriptional regulator PA2737, MerR family compare
GFF341 -1.1 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5896 -1.1 -5.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF213 -1.1 -3.9 tmRNA-binding protein SmpB compare
GFF6694 -1.0 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF6246 -1.0 -4.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1858 -1.0 -1.7 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF5491 -1.0 -3.9 Peptide deformylase (EC 3.5.1.88) compare
GFF2973 -1.0 -1.5 Transcriptional regulator compare
GFF3974 -1.0 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6428 -1.0 -2.0 Glyoxalase/bleomycin resistance protein/dioxygenase compare
GFF6324 -1.0 -8.0 Kup system potassium uptake protein compare
GFF3790 -1.0 -3.9 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5057 -1.0 -8.5 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF3250 -0.9 -2.4 Barstar, ribonuclease (Barnase) inhibitor compare
GFF3152 -0.9 -2.5 hypothetical protein compare
GFF2819 -0.9 -2.4 Phosphoenolpyruvate synthase regulatory protein compare
GFF6876 -0.9 -7.3 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF2515 -0.9 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF6294 -0.9 -2.8 Cell division protein compare
GFF2262 -0.9 -1.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF821 -0.9 -1.9 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3624 -0.9 -6.1 Putative transmembrane protein compare
GFF5036 -0.9 -2.8 Opine oxidase subunit B compare
GFF1742 -0.9 -1.1 hypothetical protein compare
GFF1159 -0.9 -4.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF4069 -0.8 -2.3 DNA-binding heavy metal response regulator compare
GFF5208 -0.8 -6.2 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF5701 -0.8 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF2847 -0.8 -1.6 histone-like nucleoid-structuring protein H-NS compare
GFF4708 -0.8 -1.5 Transcriptional regulator RSp1267, LysR family compare
GFF488 -0.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF576 -0.8 -2.7 Tol biopolymer transport system, TolR protein compare
GFF3389 -0.8 -3.2 Glycosyl transferases, related to UDP-glucuronosyltransferase compare
GFF5812 -0.8 -1.7 DNA-binding heavy metal response regulator compare
GFF5699 -0.8 -2.1 Smr domain protein compare
GFF575 -0.8 -5.2 Tol-Pal system protein TolQ compare
GFF577 -0.8 -1.9 TolA protein compare
GFF6875 -0.8 -4.7 hypothetical protein compare
GFF5700 -0.8 -1.3 UPF0758 family protein compare
GFF1356 -0.8 -1.3 Putative manganese efflux pump MntP compare
GFF6878 -0.8 -6.4 hypothetical protein compare
GFF20 -0.8 -0.9 hypothetical protein compare
GFF7291 -0.8 -3.9 Magnesium and cobalt transport protein CorA compare
GFF506 -0.8 -1.9 hypothetical protein compare
GFF6263 -0.7 -0.9 Uncharacterized protein Atu0170, clustered with phosphonate utilization compare
GFF3130 -0.7 -1.2 hypothetical protein compare
GFF4348 -0.7 -1.6 hypothetical protein compare
GFF292 -0.7 -6.1 Tol-Pal system beta propeller repeat protein TolB compare
GFF3892 -0.7 -0.7 no description compare
GFF6148 -0.7 -1.6 hypothetical protein compare
GFF5246 -0.7 -4.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF5534 -0.7 -2.0 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF89 -0.7 -1.5 hypothetical protein compare
GFF3335 -0.7 -2.2 no description compare
GFF990 -0.7 -3.0 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF6966 -0.7 -1.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF4221 -0.7 -1.1 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) compare
GFF6182 -0.7 -2.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF6290 -0.7 -6.0 RNA polymerase sigma-54 factor RpoN compare
GFF6340 -0.7 -2.0 no description compare
GFF399 -0.7 -5.7 3'-to-5' exoribonuclease RNase R compare
GFF4668 -0.7 -1.8 hypothetical protein compare
GFF6293 -0.7 -2.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF4143 -0.7 -1.7 Dihydrofolate reductase (EC 1.5.1.3) compare
GFF3845 -0.7 -3.1 Ribonuclease E (EC 3.1.26.12) compare
GFF2844 -0.6 -4.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF3957 -0.6 -1.3 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF1740 -0.6 -1.4 Transcriptional regulator, LysR family compare
GFF4492 -0.6 -4.1 Protein of unknown function DUF484 compare
GFF5049 -0.6 -0.8 NAD-dependent protein deacetylase of SIR2 family compare
GFF2164 -0.6 -3.4 Transcriptional regulator, IclR family compare
GFF3160 -0.6 -1.6 Transcriptional regulator YeiE, LysR family compare
GFF694 -0.6 -1.4 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) compare
GFF4117 -0.6 -2.5 Translation elongation factor Tu compare
GFF5118 -0.6 -2.0 gluconolactonase family protein compare
GFF1559 -0.6 -1.1 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF4006 -0.6 -4.1 DNA polymerase I (EC 2.7.7.7) compare
GFF4972 -0.6 -1.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF5332 -0.6 -5.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF4356 -0.6 -2.3 Alpha-methylacyl-CoA racemase (EC 5.1.99.4) compare
GFF2725 -0.6 -1.2 Isochorismatase (EC 3.3.2.1) compare
GFF3425 -0.6 -1.1 no description compare
GFF2341 -0.6 -1.0 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF2141 -0.6 -4.4 GTP-binding and nucleic acid-binding protein YchF compare
GFF2990 -0.6 -1.6 Probable hydrolase protein (EC 3.-.-.-) compare
GFF273 -0.6 -3.5 Transcriptional regulator, Xre family compare
GFF2344 -0.6 -1.8 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF3767 -0.6 -1.1 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
GFF3854 -0.6 -1.5 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF156 -0.6 -2.2 Glycosyl transferase, group 2 family compare
GFF988 -0.6 -3.3 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) compare
GFF5044 -0.6 -1.7 ABC transporter, ATP-binding protein (cluster 9, phospholipid) compare
GFF4203 -0.6 -0.9 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF212 -0.6 -4.0 Ribosome association toxin RatA compare
GFF5210 -0.6 -1.4 hypothetical protein compare
GFF3625 -0.6 -2.6 Ferredoxin, 2Fe-2S compare
GFF5764 -0.6 -1.8 hypothetical protein compare
GFF2936 -0.6 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF1917 -0.6 -3.1 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF6592 -0.6 -1.7 hypothetical protein compare
GFF2010 -0.6 -3.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
GFF1400 -0.6 -2.5 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF1966 -0.6 -3.9 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF3576 -0.6 -1.2 no description compare
GFF3303 -0.6 -2.6 Acetyltransferase, GNAT family compare
GFF4018 -0.6 -1.1 Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family compare
GFF6022 -0.6 -3.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF163 -0.6 -1.2 no description compare
GFF313 -0.6 -1.5 FIG027190: Putative transmembrane protein compare
GFF5030 -0.6 -0.8 no description compare
GFF2045 -0.6 -3.4 Peptide chain release factor 3 compare
GFF4961 -0.6 -2.1 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in no phage control experiments