Experiment set2S352 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF239 -4.3 -3.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF2835 -3.6 -3.5 putative TonB-dependent receptor compare
GFF2836 -3.6 -3.5 MotA/TolQ/ExbB proton channel family protein compare
GFF5512 -3.3 -2.2 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3888 -2.9 -6.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3890 -2.9 -2.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF5424 -2.8 -2.4 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF6042 -2.8 -5.6 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF3889 -2.7 -2.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5065 -2.7 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF255 -2.7 -3.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF944 -2.6 -3.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF2627 -2.6 -5.2 Chorismate synthase (EC 4.2.3.5) compare
GFF5307 -2.5 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF1984 -2.4 -3.6 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF7295 -2.4 -5.0 HPr kinase/phosphorylase compare
GFF968 -2.4 -2.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF489 -2.4 -6.3 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF240 -2.2 -11.2 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF2730 -2.1 -4.1 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF1119 -2.1 -6.0 Ribonuclease HI (EC 3.1.26.4) compare
GFF1106 -2.0 -3.3 UvrD/REP helicase compare
GFF7231 -1.9 -2.0 no description compare
GFF5361 -1.9 -1.7 FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
GFF3928 -1.9 -2.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF5325 -1.9 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF232 -1.9 -8.0 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF4748 -1.8 -2.7 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF3952 -1.8 -4.1 LSU ribosomal protein L19p compare
GFF372 -1.8 -8.0 PMID: 11481431 compare
GFF3651 -1.8 -2.1 PTS system, IIA component compare
GFF4454 -1.8 -5.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF6036 -1.8 -7.3 DNA translocase FtsK compare
GFF2734 -1.7 -6.6 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF5877 -1.7 -4.7 Probable proline rich signal peptide protein compare
GFF4119 -1.7 -2.3 no description compare
GFF6512 -1.7 -2.2 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF408 -1.7 -2.0 Two-component system response regulator OmpR compare
GFF409 -1.7 -6.5 Osmolarity sensory histidine kinase EnvZ compare
GFF6570 -1.7 -2.4 hypothetical protein compare
GFF302 -1.7 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3600 -1.7 -3.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF2547 -1.6 -2.5 Type I antifreeze protein compare
GFF7294 -1.6 -3.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF5324 -1.6 -2.6 Shikimate kinase I (EC 2.7.1.71) compare
GFF6328 -1.6 -1.7 LPS-assembly lipoprotein LptE compare
GFF2142 -1.6 -1.8 Glutathione S-transferase (EC 2.5.1.18) compare
GFF1324 -1.5 -3.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2523 -1.5 -3.5 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF1105 -1.5 -3.2 Helicase compare
GFF5333 -1.5 -2.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF4000 -1.5 -5.6 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF5491 -1.5 -5.3 Peptide deformylase (EC 3.5.1.88) compare
GFF2515 -1.5 -2.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF4557 -1.5 -4.8 Dihydroorotase (EC 3.5.2.3) compare
GFF3089 -1.5 -2.3 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF4447 -1.4 -7.4 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF2804 -1.4 -2.6 Membrane protein compare
GFF3394 -1.4 -1.7 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF487 -1.4 -8.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF5509 -1.4 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF2341 -1.4 -1.9 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF577 -1.4 -2.9 TolA protein compare
GFF5513 -1.4 -2.3 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF966 -1.3 -6.3 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF5036 -1.3 -3.6 Opine oxidase subunit B compare
GFF865 -1.3 -2.0 hypothetical protein compare
GFF5876 -1.3 -6.4 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3649 -1.3 -8.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF3960 -1.3 -6.5 3'-to-5' oligoribonuclease (orn) compare
GFF339 -1.2 -3.0 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF341 -1.2 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2815 -1.2 -2.4 Primosomal replication protein N compare
GFF4663 -1.2 -1.9 no description compare
GFF967 -1.2 -9.3 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF6128 -1.2 -2.1 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF6334 -1.2 -2.3 no description compare
GFF6294 -1.2 -3.7 Cell division protein compare
GFF5118 -1.2 -3.1 gluconolactonase family protein compare
GFF2344 -1.2 -2.8 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF5701 -1.2 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF219 -1.2 -3.6 GTP-binding protein TypA/BipA compare
GFF4033 -1.1 -1.9 no description compare
GFF6700 -1.1 -2.5 Single-stranded-DNA-specific exonuclease RecJ compare
GFF6246 -1.1 -4.2 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF5927 -1.1 -1.9 3-oxoacyl-[ACP] synthase compare
GFF2343 -1.1 -5.0 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF3905 -1.1 -4.1 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF6324 -1.1 -8.8 Kup system potassium uptake protein compare
GFF6129 -1.1 -4.6 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF3050 -1.1 -1.7 Lactam utilization protein LamB compare
GFF4203 -1.1 -2.0 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF633 -1.1 -2.2 Urea ABC transporter, ATPase protein UrtD compare
GFF4950 -1.1 -2.7 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) compare
GFF4305 -1.1 -1.3 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3510 -1.1 -1.5 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF497 -1.1 -4.4 Phytoene synthase (EC 2.5.1.32) compare
GFF431 -1.0 -2.2 Esterase/lipase compare
GFF5896 -1.0 -4.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF6047 -1.0 -2.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
GFF6523 -1.0 -2.3 hypothetical protein compare
GFF2973 -1.0 -1.5 Transcriptional regulator compare
GFF6876 -1.0 -7.7 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF2240 -1.0 -1.3 hypothetical protein compare
GFF6694 -1.0 -1.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF570 -1.0 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
GFF371 -1.0 -1.7 RNA-binding protein YhbY compare
GFF5044 -1.0 -2.3 ABC transporter, ATP-binding protein (cluster 9, phospholipid) compare
GFF6182 -1.0 -2.7 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF1356 -1.0 -1.5 Putative manganese efflux pump MntP compare
GFF3401 -1.0 -1.4 P-hydroxylaminobenzoate lyase compare
GFF2252 -1.0 -3.6 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF7206 -1.0 -2.0 no description compare
GFF506 -1.0 -2.2 hypothetical protein compare
GFF7204 -1.0 -3.7 no description compare
GFF5666 -0.9 -2.9 Prevent host death protein, Phd antitoxin compare
GFF2342 -0.9 -3.3 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF5057 -0.9 -8.1 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF575 -0.9 -5.7 Tol-Pal system protein TolQ compare
GFF7289 -0.9 -1.6 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF6439 -0.9 -2.0 Transcriptional regulator, LysR family compare
GFF3250 -0.9 -2.4 Barstar, ribonuclease (Barnase) inhibitor compare
GFF3854 -0.9 -1.9 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF15 -0.9 -0.8 no description compare
GFF5209 -0.9 -2.6 DUF1854 domain-containing protein compare
GFF6194 -0.9 -2.8 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF5383 -0.9 -1.6 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF2949 -0.9 -1.5 no description compare
GFF7178 -0.9 -1.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF3986 -0.9 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1159 -0.9 -4.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF1908 -0.9 -1.5 Short-chain dehydrogenases of various substrate specificities compare
GFF5208 -0.9 -6.3 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF6618 -0.9 -2.0 Mlr6156 protein compare
GFF1782 -0.9 -2.7 integral membrane sensor signal transduction histidine kinase compare
GFF3790 -0.9 -3.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF1896 -0.9 -1.9 Two-component transcriptional response regulator, LuxR family compare
GFF859 -0.8 -2.1 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF6378 -0.8 -1.3 Nicotinamidase (EC 3.5.1.19) compare
GFF1625 -0.8 -1.9 Transcriptional regulator, LysR family compare
GFF89 -0.8 -1.6 hypothetical protein compare
GFF6963 -0.8 -2.3 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) compare
GFF624 -0.8 -1.5 hypothetical protein compare
GFF1228 -0.8 -1.4 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
GFF2847 -0.8 -1.6 histone-like nucleoid-structuring protein H-NS compare
GFF3865 -0.8 -3.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
GFF2844 -0.8 -4.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4145 -0.8 -1.1 transcriptional regulators-like protein compare
GFF6030 -0.8 -3.1 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF576 -0.8 -2.7 Tol biopolymer transport system, TolR protein compare
GFF4710 -0.8 -1.8 MutT/Nudix family protein compare
GFF1649 -0.8 -2.2 hypothetical protein compare
GFF6094 -0.8 -1.9 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) compare
GFF3624 -0.8 -5.2 Putative transmembrane protein compare
GFF2239 -0.8 -1.1 no description compare
GFF303 -0.8 -3.1 Probable transcriptional regulatory protein YebC compare
GFF488 -0.8 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4121 -0.8 -2.2 no description compare
GFF213 -0.7 -2.4 tmRNA-binding protein SmpB compare
GFF3845 -0.7 -3.3 Ribonuclease E (EC 3.1.26.12) compare
GFF6031 -0.7 -3.3 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3422 -0.7 -1.9 Lipoprotein-related protein compare
GFF992 -0.7 -3.7 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) compare
GFF6875 -0.7 -4.2 hypothetical protein compare
GFF4825 -0.7 -2.4 SWIB/MDM2 domain-containing proteins compare
GFF970 -0.7 -5.0 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF4437 -0.7 -3.7 Low-complexity acidic protein, XCC2875 type compare
GFF3160 -0.7 -1.7 Transcriptional regulator YeiE, LysR family compare
GFF292 -0.7 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
GFF3451 -0.7 -1.1 no description compare
GFF3716 -0.7 -2.0 Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway compare
GFF2192 -0.7 -2.1 FIG00932626: hypothetical protein compare
GFF1013 -0.7 -1.0 hypothetical protein compare
GFF4482 -0.7 -1.7 Transcriptional regulator MraZ compare
GFF6878 -0.7 -5.8 hypothetical protein compare
GFF1256 -0.7 -0.9 Probable NADH dehydrogenase/NAD(P)H nitroreductase compare
GFF1789 -0.7 -1.8 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF3152 -0.7 -1.6 hypothetical protein compare
GFF1917 -0.7 -3.4 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF272 -0.7 -1.5 thioesterase superfamily protein compare
GFF20 -0.7 -0.9 hypothetical protein compare
GFF6290 -0.7 -5.9 RNA polymerase sigma-54 factor RpoN compare
GFF6022 -0.7 -3.5 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF868 -0.7 -1.4 Uracil-DNA glycosylase, family 1 compare
GFF2838 -0.7 -1.3 hypothetical protein compare
GFF6592 -0.7 -1.5 hypothetical protein compare
GFF2023 -0.7 -3.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
GFF127 -0.7 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF6443 -0.7 -2.0 no description compare
GFF1751 -0.7 -1.2 Rhodanese-related sulfurtransferase, 4 domains compare
GFF1559 -0.7 -1.2 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF5267 -0.7 -1.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF399 -0.7 -5.5 3'-to-5' exoribonuclease RNase R compare
GFF7130 -0.6 -1.1 Mobile element protein compare
GFF5317 -0.6 -1.1 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF4839 -0.6 -1.3 Transcriptional regulator PA2737, MerR family compare
GFF1230 -0.6 -1.1 Malic enzyme compare
GFF4182 -0.6 -1.1 Extracytoplasmic function (ECF) sigma factor VreI compare
GFF5937 -0.6 -2.2 T6SS component TssG (ImpH/VasB) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms