Experiment set2S351 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF239 -4.3 -2.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF3377 -4.2 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF2835 -3.3 -3.8 putative TonB-dependent receptor compare
GFF2836 -3.2 -4.8 MotA/TolQ/ExbB proton channel family protein compare
GFF3888 -3.0 -6.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5324 -2.9 -3.4 Shikimate kinase I (EC 2.7.1.71) compare
GFF6328 -2.9 -2.1 LPS-assembly lipoprotein LptE compare
GFF944 -2.8 -3.2 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3889 -2.8 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5877 -2.7 -5.7 Probable proline rich signal peptide protein compare
GFF5065 -2.7 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3890 -2.7 -3.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3928 -2.6 -2.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF255 -2.5 -2.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF6042 -2.3 -5.2 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF489 -2.3 -6.2 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF6036 -2.1 -7.9 DNA translocase FtsK compare
GFF5512 -2.1 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF6700 -2.1 -3.8 Single-stranded-DNA-specific exonuclease RecJ compare
GFF6512 -2.1 -2.7 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF968 -2.0 -3.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5307 -2.0 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF1324 -2.0 -3.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF1105 -2.0 -3.7 Helicase compare
GFF3651 -2.0 -2.3 PTS system, IIA component compare
GFF7295 -2.0 -5.0 HPr kinase/phosphorylase compare
GFF2730 -2.0 -4.0 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF5325 -1.9 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF4557 -1.9 -5.1 Dihydroorotase (EC 3.5.2.3) compare
GFF1984 -1.9 -3.0 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF240 -1.8 -9.1 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF7294 -1.8 -3.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF409 -1.8 -6.3 Osmolarity sensory histidine kinase EnvZ compare
GFF5701 -1.8 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF3960 -1.7 -8.2 3'-to-5' oligoribonuclease (orn) compare
GFF2734 -1.7 -6.7 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF3600 -1.7 -3.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF302 -1.6 -1.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF4454 -1.6 -5.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF7063 -1.6 -2.7 Antibiotic biosynthesis monooxygenase compare
GFF5876 -1.6 -7.5 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF1119 -1.6 -4.8 Ribonuclease HI (EC 3.1.26.4) compare
GFF3941 -1.6 -2.0 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF408 -1.5 -2.2 Two-component system response regulator OmpR compare
GFF5666 -1.5 -3.7 Prevent host death protein, Phd antitoxin compare
GFF598 -1.5 -2.3 no description compare
GFF4447 -1.5 -7.8 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF487 -1.5 -8.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF5509 -1.4 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5896 -1.4 -5.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF232 -1.4 -6.7 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF3974 -1.4 -2.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1106 -1.4 -2.7 UvrD/REP helicase compare
GFF3790 -1.4 -4.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF5513 -1.4 -2.5 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF2627 -1.3 -3.8 Chorismate synthase (EC 4.2.3.5) compare
GFF5491 -1.3 -4.9 Peptide deformylase (EC 3.5.1.88) compare
GFF3089 -1.3 -2.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF2949 -1.3 -1.6 no description compare
GFF3649 -1.3 -8.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF2547 -1.2 -3.2 Type I antifreeze protein compare
GFF84 -1.2 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF773 -1.2 -1.8 hypothetical protein compare
GFF7231 -1.2 -1.8 no description compare
GFF5424 -1.2 -1.6 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF2344 -1.2 -2.5 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF371 -1.2 -2.1 RNA-binding protein YhbY compare
GFF1756 -1.2 -1.5 hypothetical protein compare
GFF966 -1.2 -5.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF4000 -1.2 -5.0 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF576 -1.1 -2.2 Tol biopolymer transport system, TolR protein compare
GFF6324 -1.1 -9.0 Kup system potassium uptake protein compare
GFF6857 -1.1 -2.1 hypothetical protein compare
GFF4305 -1.1 -1.4 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF5383 -1.1 -2.1 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF497 -1.1 -4.9 Phytoene synthase (EC 2.5.1.32) compare
GFF219 -1.1 -3.4 GTP-binding protein TypA/BipA compare
GFF378 -1.1 -2.4 RNA (nucleoside 2'-O)-methyltransferase compare
GFF967 -1.0 -8.2 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5118 -1.0 -2.9 gluconolactonase family protein compare
GFF4334 -1.0 -2.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3374 -1.0 -2.6 no description compare
GFF213 -1.0 -3.6 tmRNA-binding protein SmpB compare
GFF3250 -1.0 -2.5 Barstar, ribonuclease (Barnase) inhibitor compare
GFF1742 -1.0 -1.3 hypothetical protein compare
GFF6294 -1.0 -3.2 Cell division protein compare
GFF3845 -1.0 -4.3 Ribonuclease E (EC 3.1.26.12) compare
GFF1559 -1.0 -1.5 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF2481 -1.0 -1.1 Urease accessory protein UreF compare
GFF6246 -1.0 -3.5 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2192 -1.0 -2.7 FIG00932626: hypothetical protein compare
GFF372 -1.0 -4.9 PMID: 11481431 compare
GFF2343 -0.9 -3.0 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF3130 -0.9 -2.4 hypothetical protein compare
GFF2342 -0.9 -3.2 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1788 -0.9 -1.5 hypothetical protein compare
GFF5057 -0.9 -8.1 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF7289 -0.9 -0.9 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF3152 -0.9 -2.6 hypothetical protein compare
GFF1782 -0.9 -2.8 integral membrane sensor signal transduction histidine kinase compare
GFF865 -0.9 -1.6 hypothetical protein compare
GFF2341 -0.9 -1.4 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF341 -0.9 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2847 -0.9 -1.7 histone-like nucleoid-structuring protein H-NS compare
GFF3166 -0.9 -1.5 Transcriptional regulator, IclR family compare
GFF6989 -0.9 -1.7 Flagellar basal-body rod modification protein FlgD compare
GFF5333 -0.9 -1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF4107 -0.9 -1.0 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF6876 -0.9 -7.0 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF2815 -0.9 -1.7 Primosomal replication protein N compare
GFF4358 -0.9 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF5914 -0.9 -1.8 hypothetical protein compare
GFF990 -0.9 -2.5 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF575 -0.8 -5.4 Tol-Pal system protein TolQ compare
GFF3952 -0.8 -2.5 LSU ribosomal protein L19p compare
GFF643 -0.8 -1.6 no description compare
GFF6878 -0.8 -6.9 hypothetical protein compare
GFF5941 -0.8 -1.2 hypothetical protein compare
GFF89 -0.8 -1.8 hypothetical protein compare
GFF2804 -0.8 -1.9 Membrane protein compare
GFF1159 -0.8 -4.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF6221 -0.8 -1.0 T6SS associated component TagF (ImpM) compare
GFF5208 -0.8 -6.0 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF2844 -0.8 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4120 -0.8 -1.6 no description compare
GFF6694 -0.8 -1.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF5036 -0.8 -3.1 Opine oxidase subunit B compare
GFF5267 -0.8 -2.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1908 -0.8 -0.9 Short-chain dehydrogenases of various substrate specificities compare
GFF3905 -0.8 -3.2 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF4437 -0.8 -4.1 Low-complexity acidic protein, XCC2875 type compare
GFF431 -0.8 -1.6 Esterase/lipase compare
GFF2139 -0.8 -1.3 Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
GFF5713 -0.8 -2.2 Flagellar basal-body P-ring formation protein FlgA compare
GFF6875 -0.8 -4.6 hypothetical protein compare
GFF819 -0.8 -1.2 Uncharacterized protein CC_2099 compare
GFF3624 -0.8 -5.8 Putative transmembrane protein compare
GFF5209 -0.8 -2.3 DUF1854 domain-containing protein compare
GFF339 -0.8 -2.1 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF4317 -0.8 -1.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF646 -0.8 -1.8 no description compare
GFF1957 -0.7 -1.3 no description compare
GFF3943 -0.7 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1917 -0.7 -3.8 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF7130 -0.7 -1.3 Mobile element protein compare
GFF488 -0.7 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF6022 -0.7 -4.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF685 -0.7 -2.2 Tricarboxylate transport protein TctC compare
GFF1529 -0.7 -1.0 Transcriptional regulator, AcrR family compare
GFF2523 -0.7 -1.8 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF3085 -0.7 -2.1 no description compare
GFF3206 -0.7 -1.4 no description compare
GFF5092 -0.7 -2.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF2699 -0.7 -1.6 4Fe-4S ferredoxin, iron-sulfur binding compare
GFF6432 -0.7 -1.5 no description compare
GFF3389 -0.7 -2.3 Glycosyl transferases, related to UDP-glucuronosyltransferase compare
GFF7222 -0.7 -1.8 Coenzyme F390 synthetase compare
GFF5246 -0.7 -4.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF4207 -0.7 -1.4 hypothetical protein compare
GFF7206 -0.7 -1.6 no description compare
GFF3767 -0.7 -1.6 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
GFF4005 -0.7 -1.6 hypothetical protein compare
GFF4156 -0.7 -1.4 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4644 -0.7 -1.5 no description compare
GFF399 -0.7 -5.9 3'-to-5' exoribonuclease RNase R compare
GFF107 -0.7 -0.7 General secretion pathway protein K compare
GFF309 -0.7 -1.3 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.59) compare
GFF6128 -0.7 -1.5 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF5091 -0.7 -1.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
GFF4216 -0.7 -0.8 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF821 -0.7 -1.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF5700 -0.7 -1.1 UPF0758 family protein compare
GFF571 -0.7 -2.5 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
GFF443 -0.6 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
GFF6820 -0.6 -1.9 hypothetical protein compare
GFF292 -0.6 -5.4 Tol-Pal system beta propeller repeat protein TolB compare
GFF1789 -0.6 -1.8 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF4788 -0.6 -1.1 Uncharacterized protein COG3236 compare
GFF570 -0.6 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
GFF1586 -0.6 -1.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF1673 -0.6 -2.0 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF5755 -0.6 -2.5 Flagellar biosynthesis protein FliS compare
GFF2936 -0.6 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF5369 -0.6 -1.4 Large-conductance mechanosensitive channel compare
GFF4668 -0.6 -1.7 hypothetical protein compare
GFF694 -0.6 -1.3 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) compare
GFF6528 -0.6 -3.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4006 -0.6 -3.7 DNA polymerase I (EC 2.7.7.7) compare
GFF3335 -0.6 -1.9 no description compare
GFF2609 -0.6 -2.1 Fructose ABC transporter, ATP-binding component FrcA compare
GFF4710 -0.6 -1.3 MutT/Nudix family protein compare
GFF2073 -0.6 -2.2 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF4024 -0.6 -2.1 Transcriptional regulator, MerR family compare
GFF212 -0.6 -4.0 Ribosome association toxin RatA compare
GFF3038 -0.6 -1.8 hypothetical protein compare
GFF2819 -0.6 -1.8 Phosphoenolpyruvate synthase regulatory protein compare
GFF1468 -0.6 -1.5 Transcriptional regulator, GntR family compare
GFF2772 -0.6 -3.3 Site-specific tyrosine recombinase XerD compare
GFF490 -0.6 -3.7 Cell division trigger factor (EC 5.2.1.8) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms