Experiment set2S35 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Xanthine 0.6574 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS07610 -2.4 -2.3 methyltransferase type 11 compare
A4249_RS10360 -2.0 -2.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS16085 -1.9 -2.0 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS12210 -1.3 -2.2 tyrosine recombinase XerC compare
A4249_RS09330 -1.3 -2.0 glycine cleavage system protein GcvH compare
A4249_RS10735 -1.2 -3.4 phosphogluconate dehydratase compare
A4249_RS06230 -1.2 -2.0 OmpH family outer membrane protein compare
A4249_RS11125 -1.2 -8.1 glycosyltransferase family 9 protein compare
A4249_RS07060 -1.1 -1.5 single-stranded DNA-binding protein compare
A4249_RS00100 -1.0 -2.1 PadR family transcriptional regulator compare
A4249_RS09275 -1.0 -3.9 DUF3035 domain-containing protein compare
A4249_RS07105 -0.9 -1.9 hypothetical protein compare
A4249_RS13030 -0.9 -5.9 glycosyltransferase family 1 protein compare
A4249_RS11150 -0.9 -4.4 capsular biosynthesis protein compare
A4249_RS04475 -0.9 -1.6 response regulator transcription factor compare
A4249_RS13025 -0.9 -6.6 hypothetical protein compare
A4249_RS16585 -0.9 -2.7 hypothetical protein compare
A4249_RS12980 -0.8 -7.3 GDP-mannose 4,6-dehydratase compare
A4249_RS05620 -0.8 -4.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13020 -0.8 -4.5 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS09035 -0.8 -1.1 redox-regulated ATPase YchF compare
A4249_RS13060 -0.8 -6.0 AGE family epimerase/isomerase compare
A4249_RS01215 -0.8 -1.6 hypothetical protein compare
A4249_RS06665 -0.8 -1.4 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS10390 -0.8 -1.5 translation elongation factor 4 compare
A4249_RS13200 -0.8 -1.7 thiamine pyrophosphate-dependent enzyme compare
A4249_RS10430 -0.8 -4.3 S1/P1 Nuclease compare
A4249_RS13070 -0.8 -5.4 phosphomannomutase/phosphoglucomutase compare
A4249_RS12970 -0.8 -3.1 glycosyltransferase family 61 protein compare
A4249_RS04635 -0.8 -6.5 cyclic nucleotide-binding domain-containing protein compare
A4249_RS00895 -0.8 -1.7 DUF1476 domain-containing protein compare
A4249_RS05625 -0.8 -6.1 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS14395 -0.7 -1.9 hypothetical protein compare
A4249_RS00925 -0.7 -1.8 multidrug efflux SMR transporter compare
A4249_RS13035 -0.7 -4.1 hypothetical protein compare
A4249_RS01010 -0.7 -4.2 capsular polysaccharide biosynthesis protein compare
A4249_RS12305 -0.7 -2.8 glycosyltransferase family 1 protein compare
A4249_RS08805 -0.7 -4.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS08375 -0.7 -1.1 hypothetical protein compare
A4249_RS01190 -0.7 -1.4 hypothetical protein compare
A4249_RS04565 -0.7 -2.0 Rrf2 family transcriptional regulator compare
A4249_RS08535 -0.7 -1.2 flagellar assembly protein FliX compare
A4249_RS12615 -0.7 -2.2 recombinase RecA compare
A4249_RS14835 -0.7 -3.1 S41 family peptidase compare
A4249_RS16010 -0.7 -2.0 flagellar type III secretion system pore protein FliP compare
A4249_RS08300 -0.7 -1.4 cold-shock protein compare
A4249_RS13045 -0.7 -5.2 glycosyltransferase family 1 protein compare
A4249_RS15865 -0.7 -1.0 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS08855 -0.6 -1.6 L,D-transpeptidase family protein compare
A4249_RS13760 -0.6 -1.3 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS05845 -0.6 -1.7 sigma-70 family RNA polymerase sigma factor compare
A4249_RS09940 -0.6 -4.0 sugar MFS transporter compare
A4249_RS08405 -0.6 -2.7 TIGR01841 family phasin compare
A4249_RS01590 -0.6 -1.1 site-specific DNA-methyltransferase compare
A4249_RS12860 -0.6 -1.2 DUF350 domain-containing protein compare
A4249_RS00290 -0.6 -0.8 histidine phosphatase family protein compare
A4249_RS12085 -0.6 -1.4 DUF883 family protein compare
A4249_RS01220 -0.6 -2.0 hypothetical protein compare
A4249_RS09255 -0.6 -0.4 phosphoribosylamine--glycine ligase compare
A4249_RS04080 -0.6 -2.2 M48 family metalloprotease compare
A4249_RS07665 -0.6 -1.8 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS13125 -0.6 -1.7 ribonuclease PH compare
A4249_RS04490 -0.6 -0.9 cobaltochelatase subunit CobS compare
A4249_RS12260 -0.6 -0.9 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS14255 -0.6 -0.8 ribonuclease P protein component compare
A4249_RS14905 -0.5 -1.2 phosphonate ABC transporter ATP-binding protein compare
A4249_RS16570 -0.5 -2.0 hypothetical protein compare
A4249_RS14625 -0.5 -1.6 hypothetical protein compare
A4249_RS15345 -0.5 -2.2 DUF6491 family protein compare
A4249_RS16095 -0.5 -1.6 Hsp20 family protein compare
A4249_RS00215 -0.5 -2.5 bifunctional diguanylate cyclase/phosphodiesterase compare
A4249_RS02640 -0.5 -0.9 hypothetical protein compare
A4249_RS12390 -0.5 -1.7 ATP-dependent protease subunit HslV compare
A4249_RS12400 -0.5 -0.7 hypothetical protein compare
A4249_RS10480 -0.5 -0.9 DUF1190 domain-containing protein compare
A4249_RS02165 -0.5 -0.7 c-type cytochrome compare
A4249_RS15360 -0.5 -1.0 DNA replication/repair protein RecF compare
A4249_RS10510 -0.5 -1.5 hypothetical protein compare
A4249_RS10460 -0.5 -4.2 ATP-binding protein compare
A4249_RS14870 -0.5 -2.5 DUF3597 family protein compare
A4249_RS01085 -0.5 -1.1 DUF2282 domain-containing protein compare
A4249_RS08570 -0.5 -2.1 group III truncated hemoglobin compare
A4249_RS01235 -0.5 -0.9 hypothetical protein compare
A4249_RS08440 -0.5 -0.6 TlyA family RNA methyltransferase compare
A4249_RS08865 -0.5 -1.0 DUF1192 domain-containing protein compare
A4249_RS08510 -0.5 -1.3 hypothetical protein compare
A4249_RS08485 -0.5 -1.5 Na+/H+ antiporter subunit C compare
A4249_RS03645 -0.4 -2.3 TonB-dependent receptor compare
A4249_RS15755 -0.4 -1.7 amino acid racemase compare
A4249_RS02865 -0.4 -1.0 arsenate reductase family protein compare
A4249_RS01230 -0.4 -1.0 hypothetical protein compare
A4249_RS01905 -0.4 -0.9 TrbC/VirB2 family protein compare
A4249_RS02765 -0.4 -1.1 hypothetical protein compare
A4249_RS03175 -0.4 -2.2 ParB N-terminal domain-containing protein compare
A4249_RS05460 -0.4 -2.0 iron ABC transporter permease compare
A4249_RS11435 -0.4 -4.1 YdcF family protein compare
A4249_RS03300 -0.4 -0.8 copper resistance protein CopC compare
A4249_RS08145 -0.4 -1.4 NAD(P)H-binding protein compare
A4249_RS09195 -0.4 -1.4 TldD/PmbA family protein compare
A4249_RS08495 -0.4 -0.7 Na+/H+ antiporter subunit E compare
A4249_RS08355 -0.4 -2.8 response regulator compare
A4249_RS09880 -0.4 -3.6 TonB-dependent receptor compare
A4249_RS08470 -0.4 -2.0 RNA methyltransferase compare
A4249_RS13310 -0.4 -2.0 transglutaminase family protein compare
A4249_RS00050 -0.4 -0.5 type 1 glutamine amidotransferase compare
A4249_RS03325 -0.4 -1.9 hypothetical protein compare
A4249_RS09445 -0.4 -1.5 SdpI family protein compare
A4249_RS09210 -0.4 -0.8 hypothetical protein compare
A4249_RS12220 -0.4 -2.6 retroviral-like aspartic protease family protein compare
A4249_RS12415 -0.4 -2.0 cation:proton antiporter compare
A4249_RS14825 -0.4 -1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS15225 -0.4 -0.9 flagellar biosynthesis protein FliQ compare
A4249_RS13010 -0.4 -2.1 FkbM family methyltransferase compare
A4249_RS04865 -0.4 -2.3 hypothetical protein compare
A4249_RS06435 -0.4 -0.8 tRNA-Asp compare
A4249_RS07150 -0.4 -2.8 hypothetical protein compare
A4249_RS13805 -0.4 -0.5 HAD family hydrolase compare
A4249_RS02840 -0.4 -1.6 N-succinylarginine dihydrolase compare
A4249_RS12275 -0.3 -1.3 cobaltochelatase subunit CobT compare
A4249_RS13180 -0.3 -0.5 SDR family oxidoreductase compare
A4249_RS03190 -0.3 -1.0 ATPase, T2SS/T4P/T4SS family compare
A4249_RS03060 -0.3 -0.8 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS03570 -0.3 -0.9 TonB family protein compare
A4249_RS13560 -0.3 -0.8 glutaredoxin 3 compare
A4249_RS03730 -0.3 -1.5 SDR family NAD(P)-dependent oxidoreductase compare
A4249_RS04125 -0.3 -0.6 mechanosensitive ion channel family protein compare
A4249_RS16630 -0.3 -0.9 DUF2474 family protein compare
A4249_RS08730 -0.3 -2.4 hypothetical protein compare
A4249_RS07115 -0.3 -1.9 hypothetical protein compare
A4249_RS03420 -0.3 -1.6 alpha-ketoglutarate-dependent dioxygenase AlkB compare
A4249_RS07135 -0.3 -2.0 hypothetical protein compare
A4249_RS07140 -0.3 -2.4 hypothetical protein compare
A4249_RS00830 -0.3 -1.6 hypothetical protein compare
A4249_RS04055 -0.3 -2.2 ABC transporter permease subunit compare
A4249_RS09550 -0.3 -2.0 AMP-binding protein compare
A4249_RS14975 -0.3 -1.4 creatininase family protein compare
A4249_RS15595 -0.3 -1.5 hypothetical protein compare
A4249_RS15180 -0.3 -1.6 hypothetical protein compare
A4249_RS06785 -0.3 -1.0 endolytic transglycosylase MltG compare
A4249_RS09075 -0.3 -0.7 hypothetical protein compare
A4249_RS16135 -0.3 -1.1 glycoside hydrolase family 3 N-terminal domain-containing protein compare
A4249_RS13250 -0.3 -1.4 MaoC family dehydratase compare
A4249_RS04955 -0.3 -1.2 DUF3606 domain-containing protein compare
A4249_RS07015 -0.3 -0.7 hypothetical protein compare
A4249_RS07485 -0.3 -1.7 hypothetical protein compare
A4249_RS09400 -0.3 -2.0 ScpA family protein compare
A4249_RS13195 -0.3 -1.2 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS07165 -0.3 -2.5 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS16780 -0.3 -1.2 HNH endonuclease compare
A4249_RS09765 -0.3 -1.4 sigma-54 dependent transcriptional regulator compare
A4249_RS13590 -0.3 -1.6 [protein-PII] uridylyltransferase compare
A4249_RS04045 -0.3 -1.6 GNAT family N-acetyltransferase compare
A4249_RS03225 -0.3 -1.0 hypothetical protein compare
A4249_RS01615 -0.3 -0.8 GNAT family N-acetyltransferase compare
A4249_RS05880 -0.3 -1.2 DUF192 domain-containing protein compare
A4249_RS08640 -0.3 -0.9 DUF1153 domain-containing protein compare
A4249_RS08705 -0.3 -1.5 response regulator compare
A4249_RS14780 -0.3 -1.5 NepR family anti-sigma factor compare
A4249_RS04450 -0.3 -0.7 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS10115 -0.3 -1.0 phage tail tape measure protein compare
A4249_RS12640 -0.3 -0.5 hypothetical protein compare
A4249_RS04615 -0.3 -1.4 DEAD/DEAH box helicase compare
A4249_RS11540 -0.3 -1.5 substrate-binding domain-containing protein compare
A4249_RS14820 -0.3 -1.6 ribosome silencing factor compare
A4249_RS02870 -0.3 -1.2 translocation/assembly module TamB domain-containing protein compare
A4249_RS17075 -0.3 -0.4 energy transducer TonB compare
A4249_RS08250 -0.3 -1.8 DUF3126 family protein compare
A4249_RS04345 -0.3 -1.1 glycosyltransferase family A protein compare
A4249_RS02725 -0.3 -1.1 hypothetical protein compare
A4249_RS15195 -0.3 -1.0 DcaP family trimeric outer membrane transporter compare
A4249_RS04975 -0.3 -1.5 YbaY family lipoprotein compare
A4249_RS10635 -0.3 -2.1 DUF4198 domain-containing protein compare
A4249_RS16420 -0.3 -1.2 hypothetical protein compare
A4249_RS00720 -0.3 -0.7 DUF1294 domain-containing protein compare
A4249_RS05640 -0.3 -1.1 NfeD family protein compare
A4249_RS15415 -0.3 -0.7 hypothetical protein compare
A4249_RS02825 -0.3 -1.4 heat shock protein HspQ compare
A4249_RS10975 -0.3 -1.6 DUF599 family protein compare
A4249_RS12025 -0.3 -1.6 Flp pilus assembly protein CpaB compare
A4249_RS02620 -0.3 -1.5 DNA repair protein RecN compare
A4249_RS02880 -0.3 -1.2 hypothetical protein compare
A4249_RS06630 -0.3 -1.6 histidine ammonia-lyase compare
A4249_RS09315 -0.3 -0.8 class 1 fructose-bisphosphatase compare
A4249_RS12205 -0.3 -0.4 DUF484 family protein compare
A4249_RS14675 -0.3 -1.4 metallopeptidase family protein compare
A4249_RS07190 -0.3 -1.0 hypothetical protein compare
A4249_RS09730 -0.3 -1.4 CsbD family protein compare
A4249_RS02905 -0.3 -0.5 tRNA guanosine(34) transglycosylase Tgt compare
A4249_RS13190 -0.3 -0.8 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS07185 -0.3 -1.2 hypothetical protein compare
A4249_RS12215 -0.3 -1.2 hypothetical protein compare
A4249_RS15110 -0.3 -0.8 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS00430 -0.2 -1.7 glutathione S-transferase family protein compare
A4249_RS14775 -0.2 -2.3 sigma-70 family RNA polymerase sigma factor compare
A4249_RS07400 -0.2 -1.6 hypothetical protein compare
A4249_RS12520 -0.2 -1.5 UrcA family protein compare
A4249_RS16725 -0.2 -0.7 hypothetical protein compare
A4249_RS07145 -0.2 -0.7 hypothetical protein compare
A4249_RS01460 -0.2 -0.5 signal peptide peptidase SppA compare
A4249_RS02740 -0.2 -1.5 flagellin compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Xanthine across organisms