Experiment set2S349 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF239 -4.3 -3.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6512 -4.2 -2.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF2835 -3.4 -3.3 putative TonB-dependent receptor compare
GFF3890 -3.3 -2.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3888 -3.2 -4.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2836 -3.1 -4.8 MotA/TolQ/ExbB proton channel family protein compare
GFF944 -3.1 -3.0 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF489 -2.8 -7.0 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3889 -2.8 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5325 -2.7 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF5065 -2.7 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3651 -2.7 -2.5 PTS system, IIA component compare
GFF1105 -2.6 -4.0 Helicase compare
GFF6042 -2.5 -5.6 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF240 -2.5 -11.8 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF4748 -2.4 -2.6 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF3941 -2.4 -1.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3928 -2.3 -2.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF5877 -2.2 -5.3 Probable proline rich signal peptide protein compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF5512 -2.2 -3.0 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF255 -2.2 -3.4 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF7295 -2.2 -4.9 HPr kinase/phosphorylase compare
GFF1106 -2.1 -3.8 UvrD/REP helicase compare
GFF4454 -2.0 -6.1 Exoribonuclease II (EC 3.1.13.1) compare
GFF1119 -2.0 -5.7 Ribonuclease HI (EC 3.1.26.4) compare
GFF6397 -2.0 -1.9 LysR family transcriptional regulator PA2758 compare
GFF2730 -2.0 -3.5 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF7231 -2.0 -2.1 no description compare
GFF3600 -2.0 -3.5 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF2734 -1.9 -7.2 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF5424 -1.9 -1.9 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF302 -1.9 -1.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF7294 -1.9 -3.9 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF3952 -1.9 -4.1 LSU ribosomal protein L19p compare
GFF5307 -1.8 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF23 -1.8 -2.6 no description compare
GFF577 -1.8 -3.3 TolA protein compare
GFF821 -1.7 -2.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF968 -1.7 -3.1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2804 -1.7 -2.7 Membrane protein compare
GFF339 -1.7 -3.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF5876 -1.7 -7.9 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4557 -1.7 -5.1 Dihydroorotase (EC 3.5.2.3) compare
GFF6328 -1.6 -1.6 LPS-assembly lipoprotein LptE compare
GFF219 -1.6 -4.8 GTP-binding protein TypA/BipA compare
GFF3425 -1.6 -3.0 no description compare
GFF1324 -1.5 -3.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF6294 -1.5 -4.2 Cell division protein compare
GFF3960 -1.5 -7.5 3'-to-5' oligoribonuclease (orn) compare
GFF4000 -1.5 -5.8 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF6700 -1.5 -3.4 Single-stranded-DNA-specific exonuclease RecJ compare
GFF1756 -1.5 -1.7 hypothetical protein compare
GFF3905 -1.5 -4.4 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF3957 -1.5 -2.7 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF5700 -1.5 -1.9 UPF0758 family protein compare
GFF3152 -1.5 -3.6 hypothetical protein compare
GFF2627 -1.5 -3.8 Chorismate synthase (EC 4.2.3.5) compare
GFF487 -1.4 -8.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF1858 -1.4 -2.0 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF7378 -1.4 -2.0 protein of unknown function DUF1311 compare
GFF1984 -1.4 -2.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF5324 -1.4 -2.4 Shikimate kinase I (EC 2.7.1.71) compare
GFF6036 -1.3 -5.9 DNA translocase FtsK compare
GFF2281 -1.3 -1.4 Short-chain dehydrogenase/reductase SDR compare
GFF5333 -1.3 -2.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF967 -1.3 -10.0 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF966 -1.3 -6.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF2838 -1.3 -2.1 hypothetical protein compare
GFF89 -1.3 -2.4 hypothetical protein compare
GFF497 -1.3 -5.9 Phytoene synthase (EC 2.5.1.32) compare
GFF2523 -1.3 -3.0 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF4447 -1.3 -6.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF1658 -1.2 -1.3 Transcriptional regulator, LysR family compare
GFF5513 -1.2 -2.2 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF5491 -1.2 -4.6 Peptide deformylase (EC 3.5.1.88) compare
GFF4182 -1.2 -2.3 Extracytoplasmic function (ECF) sigma factor VreI compare
GFF3250 -1.2 -2.7 Barstar, ribonuclease (Barnase) inhibitor compare
GFF5896 -1.2 -5.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2090 -1.2 -3.4 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF5209 -1.2 -3.2 DUF1854 domain-containing protein compare
GFF232 -1.1 -5.8 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF7130 -1.1 -1.4 Mobile element protein compare
GFF2533 -1.1 -3.0 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF372 -1.1 -5.8 PMID: 11481431 compare
GFF2343 -1.1 -4.9 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF409 -1.1 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF1625 -1.1 -1.3 Transcriptional regulator, LysR family compare
GFF103 -1.1 -1.6 General secretion pathway protein E compare
GFF5666 -1.1 -2.8 Prevent host death protein, Phd antitoxin compare
GFF3986 -1.1 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6876 -1.0 -8.1 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF3649 -1.0 -7.2 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF5057 -1.0 -9.1 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF431 -1.0 -2.2 Esterase/lipase compare
GFF2823 -1.0 -2.5 Hemin transport protein HmuS compare
GFF5734 -1.0 -0.9 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF1474 -1.0 -1.9 Transcriptional regulator, LysR family compare
GFF2515 -1.0 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF4710 -1.0 -1.4 MutT/Nudix family protein compare
GFF6878 -1.0 -7.8 hypothetical protein compare
GFF5118 -1.0 -2.5 gluconolactonase family protein compare
GFF6324 -1.0 -7.5 Kup system potassium uptake protein compare
GFF2547 -1.0 -1.9 Type I antifreeze protein compare
GFF5509 -0.9 -2.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5122 -0.9 -1.3 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination compare
GFF2847 -0.9 -1.8 histone-like nucleoid-structuring protein H-NS compare
GFF4120 -0.9 -1.7 no description compare
GFF4356 -0.9 -3.0 Alpha-methylacyl-CoA racemase (EC 5.1.99.4) compare
GFF2192 -0.9 -2.7 FIG00932626: hypothetical protein compare
GFF1159 -0.9 -5.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF143 -0.9 -1.8 Dethiobiotin synthase BioD (EC 6.3.3.3) compare
GFF341 -0.9 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5531 -0.9 -2.2 hypothetical protein compare
GFF408 -0.9 -1.3 Two-component system response regulator OmpR compare
GFF4462 -0.9 -1.6 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF575 -0.9 -5.5 Tol-Pal system protein TolQ compare
GFF291 -0.9 -4.8 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF371 -0.9 -2.0 RNA-binding protein YhbY compare
GFF990 -0.9 -3.8 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF6989 -0.9 -1.7 Flagellar basal-body rod modification protein FlgD compare
GFF213 -0.9 -3.2 tmRNA-binding protein SmpB compare
GFF6971 -0.9 -1.3 no description compare
GFF5383 -0.9 -2.4 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF6786 -0.9 -2.1 CopG protein compare
GFF4352 -0.9 -1.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF2819 -0.8 -1.8 Phosphoenolpyruvate synthase regulatory protein compare
GFF5941 -0.8 -1.2 hypothetical protein compare
GFF2791 -0.8 -1.9 hypothetical protein compare
GFF4437 -0.8 -4.5 Low-complexity acidic protein, XCC2875 type compare
GFF5958 -0.8 -2.1 FIG00537018: hypothetical protein compare
GFF576 -0.8 -2.4 Tol biopolymer transport system, TolR protein compare
GFF3864 -0.8 -3.1 Sigma factor RpoE negative regulatory protein RseA compare
GFF7250 -0.8 -0.9 Putative transposase InsK for insertion sequence element IS150 compare
GFF2853 -0.8 -2.1 DNA-binding protein HU-beta compare
GFF6374 -0.8 -1.2 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF3749 -0.8 -1.0 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF6875 -0.8 -4.4 hypothetical protein compare
GFF3790 -0.8 -3.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF1611 -0.8 -3.6 no description compare
GFF6271 -0.8 -1.9 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF3624 -0.8 -5.8 Putative transmembrane protein compare
GFF2344 -0.8 -1.5 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF3394 -0.8 -1.1 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF6194 -0.8 -1.9 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF5080 -0.8 -3.8 DNA recombination-dependent growth factor RdgC compare
GFF5339 -0.8 -1.7 Phospholipid ABC transporter-binding protein MlaB compare
GFF6094 -0.8 -1.9 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) compare
GFF5328 -0.8 -2.7 FIG00537720: hypothetical protein compare
GFF5798 -0.8 -1.5 hypothetical protein compare
GFF4285 -0.7 -1.5 Tricarboxylate transport protein TctC compare
GFF6182 -0.7 -2.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF4839 -0.7 -1.6 Transcriptional regulator PA2737, MerR family compare
GFF4438 -0.7 -3.4 Sugar kinases, ribokinase family compare
GFF4121 -0.7 -2.0 no description compare
GFF3089 -0.7 -1.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF7206 -0.7 -1.6 no description compare
GFF5036 -0.7 -2.9 Opine oxidase subunit B compare
GFF970 -0.7 -5.0 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF5974 -0.7 -1.4 hypothetical protein compare
GFF4974 -0.7 -2.3 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF6982 -0.7 -1.5 hypothetical protein compare
GFF2973 -0.7 -1.1 Transcriptional regulator compare
GFF5267 -0.7 -2.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3621 -0.7 -4.4 Magnesium and cobalt transport protein CorA compare
GFF2578 -0.7 -3.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
GFF5091 -0.7 -1.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
GFF6129 -0.7 -3.2 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF506 -0.7 -1.7 hypothetical protein compare
GFF6207 -0.7 -1.0 Allantoin racemase (EC 5.1.99.3) compare
GFF819 -0.7 -1.4 Uncharacterized protein CC_2099 compare
GFF1559 -0.7 -1.1 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF1966 -0.7 -5.0 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF6100 -0.7 -1.8 no description compare
GFF5208 -0.7 -4.9 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF6022 -0.7 -3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF399 -0.7 -5.7 3'-to-5' exoribonuclease RNase R compare
GFF5484 -0.7 -2.4 Protein translocase subunit YajC compare
GFF1782 -0.7 -2.8 integral membrane sensor signal transduction histidine kinase compare
GFF3584 -0.7 -1.2 hypothetical protein compare
GFF3715 -0.7 -1.2 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF212 -0.6 -4.1 Ribosome association toxin RatA compare
GFF4626 -0.6 -3.1 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF3711 -0.6 -1.6 oxidoreductase, 2OG-Fe(II) oxygenase family compare
GFF3870 -0.6 -2.8 Ribonuclease III (EC 3.1.26.3) compare
GFF5673 -0.6 -3.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
GFF2073 -0.6 -2.3 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF303 -0.6 -2.8 Probable transcriptional regulatory protein YebC compare
GFF6246 -0.6 -2.7 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF6934 -0.6 -1.9 Universal stress protein family compare
GFF4790 -0.6 -3.4 Nudix-related transcriptional regulator NrtR compare
GFF5914 -0.6 -1.2 hypothetical protein compare
GFF2568 -0.6 -4.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF6263 -0.6 -0.7 Uncharacterized protein Atu0170, clustered with phosphonate utilization compare
GFF292 -0.6 -5.2 Tol-Pal system beta propeller repeat protein TolB compare
GFF646 -0.6 -1.2 no description compare
GFF624 -0.6 -1.3 hypothetical protein compare
GFF5076 -0.6 -4.9 hypothetical protein compare
GFF3418 -0.6 -2.1 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF5246 -0.6 -4.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms