Experiment set2S348 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF372 -4.8 -5.7 PMID: 11481431 compare
GFF5076 -4.6 -13.3 hypothetical protein compare
GFF6022 -4.5 -5.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF4625 -4.3 -6.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF4626 -4.3 -7.7 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF6875 -4.2 -7.1 hypothetical protein compare
GFF6876 -4.2 -14.6 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF239 -4.0 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF371 -3.9 -3.8 RNA-binding protein YhbY compare
GFF6878 -3.8 -16.4 hypothetical protein compare
GFF4790 -3.1 -8.4 Nudix-related transcriptional regulator NrtR compare
GFF3889 -3.1 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF6512 -3.0 -2.9 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF577 -2.8 -3.8 TolA protein compare
GFF1105 -2.8 -4.1 Helicase compare
GFF2730 -2.8 -3.7 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF20 -2.8 -2.4 hypothetical protein compare
GFF6328 -2.7 -2.0 LPS-assembly lipoprotein LptE compare
GFF409 -2.7 -6.4 Osmolarity sensory histidine kinase EnvZ compare
GFF6036 -2.7 -8.1 DNA translocase FtsK compare
GFF2835 -2.6 -4.3 putative TonB-dependent receptor compare
GFF2836 -2.5 -5.1 MotA/TolQ/ExbB proton channel family protein compare
GFF240 -2.4 -11.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF1106 -2.4 -3.3 UvrD/REP helicase compare
GFF3624 -2.4 -13.2 Putative transmembrane protein compare
GFF3888 -2.4 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5267 -2.4 -3.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4839 -2.4 -2.7 Transcriptional regulator PA2737, MerR family compare
GFF255 -2.3 -3.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5324 -2.3 -3.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF2734 -2.3 -7.0 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF7294 -2.2 -3.9 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF3621 -2.2 -9.6 Magnesium and cobalt transport protein CorA compare
GFF944 -2.1 -2.9 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5325 -2.1 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF489 -2.0 -5.6 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF6294 -2.0 -4.9 Cell division protein compare
GFF2380 -2.0 -4.7 Protein phosphatase 2C-like compare
GFF6700 -2.0 -3.5 Single-stranded-DNA-specific exonuclease RecJ compare
GFF576 -1.9 -4.0 Tol biopolymer transport system, TolR protein compare
GFF5701 -1.9 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF7231 -1.9 -2.1 no description compare
GFF7295 -1.9 -4.5 HPr kinase/phosphorylase compare
GFF2354 -1.9 -7.9 FIG00555615: hypothetical protein compare
GFF6042 -1.9 -4.9 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF3890 -1.8 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF236 -1.8 -7.7 Two-component transcriptional response regulator receiver domain compare
GFF5424 -1.8 -1.8 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF575 -1.8 -8.6 Tol-Pal system protein TolQ compare
GFF1756 -1.7 -2.0 hypothetical protein compare
GFF2506 -1.7 -11.1 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF3600 -1.7 -3.2 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF6787 -1.7 -2.2 Copper tolerance protein compare
GFF506 -1.7 -3.0 hypothetical protein compare
GFF5065 -1.7 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF5523 -1.6 -1.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF2505 -1.6 -5.6 hypothetical protein compare
GFF4454 -1.6 -5.6 Exoribonuclease II (EC 3.1.13.1) compare
GFF1324 -1.6 -3.2 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF5491 -1.6 -5.4 Peptide deformylase (EC 3.5.1.88) compare
GFF5208 -1.6 -9.8 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF3625 -1.5 -6.9 Ferredoxin, 2Fe-2S compare
GFF4352 -1.5 -2.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF3089 -1.5 -2.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3835 -1.5 -1.9 ADP-ribosylglycohydrolase family protein compare
GFF487 -1.5 -8.5 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF6128 -1.5 -2.7 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF2563 -1.5 -8.6 Two-component system sensor histidine kinase compare
GFF2152 -1.5 -6.8 twitching motility protein PilH compare
GFF5876 -1.5 -6.8 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF2252 -1.5 -5.0 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF1119 -1.4 -4.5 Ribonuclease HI (EC 3.1.26.4) compare
GFF1984 -1.4 -2.7 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF3928 -1.4 -1.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF4748 -1.4 -1.6 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF5220 -1.4 -1.9 putative secreted oxidoreductase compare
GFF1661 -1.4 -2.1 no description compare
GFF6465 -1.4 -2.6 hypothetical protein compare
GFF5307 -1.4 -3.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF4557 -1.4 -4.5 Dihydroorotase (EC 3.5.2.3) compare
GFF5877 -1.4 -3.9 Probable proline rich signal peptide protein compare
GFF292 -1.3 -10.1 Tol-Pal system beta propeller repeat protein TolB compare
GFF3152 -1.3 -3.2 hypothetical protein compare
GFF4000 -1.3 -5.0 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF531 -1.3 -10.6 hypothetical protein compare
GFF1831 -1.3 -2.0 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF2515 -1.3 -2.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF968 -1.3 -2.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1047 -1.3 -8.2 hypothetical protein compare
GFF291 -1.3 -6.7 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF5512 -1.2 -2.3 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF6868 -1.2 -3.6 SAM-dependent methyltransferase compare
GFF967 -1.2 -9.0 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF5666 -1.2 -3.2 Prevent host death protein, Phd antitoxin compare
GFF290 -1.2 -6.2 Cell division coordinator CpoB compare
GFF5369 -1.2 -2.1 Large-conductance mechanosensitive channel compare
GFF84 -1.1 -2.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF651 -1.1 -6.2 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF232 -1.1 -5.3 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF5386 -1.1 -1.6 hypothetical protein compare
GFF3160 -1.1 -2.3 Transcriptional regulator YeiE, LysR family compare
GFF5513 -1.1 -2.0 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF3980 -1.1 -1.8 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-) compare
GFF147 -1.1 -2.5 Transcriptional regulator compare
GFF6012 -1.0 -1.9 Tricarboxylate transport protein TctC compare
GFF5411 -1.0 -7.5 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF1865 -1.0 -2.7 Transcriptional regulator, AraC family compare
GFF4203 -1.0 -1.8 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF4334 -1.0 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3960 -1.0 -5.1 3'-to-5' oligoribonuclease (orn) compare
GFF5746 -1.0 -1.8 Flagellar protein FliJ compare
GFF5778 -1.0 -2.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF7093 -1.0 -2.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF339 -1.0 -2.3 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF127 -1.0 -2.1 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF7188 -1.0 -1.7 Uncharacterized methyltransferase PA1407 compare
GFF7011 -0.9 -3.0 Taurine ABC transporter, permease protein TauC compare
GFF1875 -0.9 -1.8 no description compare
GFF990 -0.9 -3.4 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF399 -0.9 -7.1 3'-to-5' exoribonuclease RNase R compare
GFF168 -0.9 -5.0 MCP methyltransferase, CheR-type compare
GFF6358 -0.9 -1.1 T6SS protein serine/threonine phosphatase PppA compare
GFF629 -0.9 -2.2 hypothetical protein compare
GFF4447 -0.9 -5.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF2843 -0.9 -7.1 Murein hydrolase activator NlpD compare
GFF1178 -0.9 -1.3 hypothetical protein compare
GFF2853 -0.9 -1.7 DNA-binding protein HU-beta compare
GFF408 -0.9 -1.4 Two-component system response regulator OmpR compare
GFF4317 -0.9 -1.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF3941 -0.9 -1.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF717 -0.9 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF4825 -0.9 -3.2 SWIB/MDM2 domain-containing proteins compare
GFF3166 -0.9 -1.5 Transcriptional regulator, IclR family compare
GFF2823 -0.9 -1.2 Hemin transport protein HmuS compare
GFF551 -0.9 -6.5 Uncharacterized protein Tbd_1903 compare
GFF7242 -0.9 -1.2 hypothetical protein compare
GFF3389 -0.9 -1.8 Glycosyl transferases, related to UDP-glucuronosyltransferase compare
GFF2090 -0.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF126 -0.8 -2.1 Repressor homolog compare
GFF6324 -0.8 -6.8 Kup system potassium uptake protein compare
GFF1526 -0.8 -4.4 putative transmembrane sensor compare
GFF2262 -0.8 -1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF5458 -0.8 -2.2 D-erythronate dehydrogenase (NAD+) compare
GFF2125 -0.8 -2.7 hypothetical protein compare
GFF1246 -0.8 -2.0 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF2250 -0.8 -2.0 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
GFF3546 -0.8 -7.3 Chaperone protein HtpG compare
GFF87 -0.8 -2.5 no description compare
GFF1429 -0.8 -1.3 no description compare
GFF5509 -0.8 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5118 -0.8 -2.3 gluconolactonase family protein compare
GFF5974 -0.8 -1.9 hypothetical protein compare
GFF341 -0.8 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF4201 -0.8 -3.3 Acyl-CoA dehydrogenase compare
GFF3986 -0.8 -1.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF6857 -0.8 -1.6 hypothetical protein compare
GFF4216 -0.8 -0.8 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF4006 -0.8 -4.6 DNA polymerase I (EC 2.7.7.7) compare
GFF6441 -0.8 -1.5 hypothetical protein compare
GFF649 -0.8 -5.6 no description compare
GFF932 -0.8 -2.5 Acetyltransferase, GNAT family compare
GFF1536 -0.8 -2.7 BUG/TctC family periplasmic protein compare
GFF7184 -0.8 -2.0 hypothetical protein compare
GFF5934 -0.7 -2.1 hypothetical protein compare
GFF7076 -0.7 -1.2 no description compare
GFF2926 -0.7 -3.2 FIG00349048: hypothetical protein compare
GFF6379 -0.7 -1.7 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF970 -0.7 -4.9 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF6293 -0.7 -2.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF6499 -0.7 -1.5 hypothetical protein compare
GFF2457 -0.7 -1.9 no description compare
GFF3401 -0.7 -0.8 P-hydroxylaminobenzoate lyase compare
GFF868 -0.7 -1.4 Uracil-DNA glycosylase, family 1 compare
GFF7322 -0.7 -2.8 hypothetical protein compare
GFF2343 -0.7 -2.5 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF5080 -0.7 -3.5 DNA recombination-dependent growth factor RdgC compare
GFF5209 -0.7 -1.9 DUF1854 domain-containing protein compare
GFF2627 -0.7 -2.3 Chorismate synthase (EC 4.2.3.5) compare
GFF272 -0.7 -1.2 thioesterase superfamily protein compare
GFF3451 -0.7 -1.1 no description compare
GFF4606 -0.7 -0.9 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF4878 -0.7 -1.6 putative lipoprotein compare
GFF3956 -0.7 -1.5 no description compare
GFF5044 -0.7 -1.6 ABC transporter, ATP-binding protein (cluster 9, phospholipid) compare
GFF479 -0.7 -0.9 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF5333 -0.7 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF5241 -0.7 -2.2 General secretion pathway protein J compare
GFF1400 -0.7 -2.1 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF2240 -0.7 -1.2 hypothetical protein compare
GFF4143 -0.7 -1.5 Dihydrofolate reductase (EC 1.5.1.3) compare
GFF6397 -0.7 -0.9 LysR family transcriptional regulator PA2758 compare
GFF4710 -0.7 -1.2 MutT/Nudix family protein compare
GFF89 -0.7 -1.3 hypothetical protein compare
GFF7018 -0.7 -0.9 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF490 -0.7 -4.3 Cell division trigger factor (EC 5.2.1.8) compare
GFF775 -0.7 -1.9 no description compare
GFF5721 -0.6 -1.3 Flagellar L-ring protein FlgH compare
GFF3034 -0.6 -1.0 no description compare
GFF4346 -0.6 -1.0 no description compare
GFF5383 -0.6 -1.8 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms