Experiment set2S347 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF372 -4.7 -6.4 PMID: 11481431 compare
GFF6022 -4.3 -6.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF239 -4.1 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF4626 -4.0 -8.0 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF5076 -3.9 -16.0 hypothetical protein compare
GFF6876 -3.8 -16.8 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF4625 -3.5 -7.2 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF6875 -3.5 -9.1 hypothetical protein compare
GFF6042 -3.4 -5.2 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF6878 -3.4 -17.2 hypothetical protein compare
GFF5307 -3.2 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF2835 -2.9 -4.0 putative TonB-dependent receptor compare
GFF3928 -2.9 -2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF409 -2.9 -6.3 Osmolarity sensory histidine kinase EnvZ compare
GFF3889 -2.8 -2.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5424 -2.8 -2.4 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF5267 -2.7 -4.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2836 -2.7 -5.4 MotA/TolQ/ExbB proton channel family protein compare
GFF5065 -2.7 -1.8 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3624 -2.6 -14.1 Putative transmembrane protein compare
GFF4790 -2.5 -7.7 Nudix-related transcriptional regulator NrtR compare
GFF1105 -2.5 -3.6 Helicase compare
GFF2380 -2.3 -5.1 Protein phosphatase 2C-like compare
GFF1984 -2.3 -3.4 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF371 -2.3 -2.3 RNA-binding protein YhbY compare
GFF1119 -2.3 -5.6 Ribonuclease HI (EC 3.1.26.4) compare
GFF240 -2.3 -10.1 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF3888 -2.2 -6.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF944 -2.2 -2.9 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1106 -2.1 -3.5 UvrD/REP helicase compare
GFF4462 -2.1 -2.5 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF408 -2.1 -2.4 Two-component system response regulator OmpR compare
GFF6700 -2.1 -3.7 Single-stranded-DNA-specific exonuclease RecJ compare
GFF489 -2.0 -5.6 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF5666 -2.0 -4.5 Prevent host death protein, Phd antitoxin compare
GFF2734 -2.0 -7.2 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF3621 -2.0 -8.9 Magnesium and cobalt transport protein CorA compare
GFF3890 -2.0 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF6036 -1.9 -7.0 DNA translocase FtsK compare
GFF5877 -1.9 -4.8 Probable proline rich signal peptide protein compare
GFF487 -1.9 -9.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF431 -1.9 -2.9 Esterase/lipase compare
GFF7295 -1.8 -4.8 HPr kinase/phosphorylase compare
GFF5208 -1.7 -10.8 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF4454 -1.7 -5.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF1535 -1.7 -2.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF236 -1.6 -7.9 Two-component transcriptional response regulator receiver domain compare
GFF5721 -1.6 -2.7 Flagellar L-ring protein FlgH compare
GFF5876 -1.6 -7.3 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF5324 -1.6 -2.4 Shikimate kinase I (EC 2.7.1.71) compare
GFF2730 -1.6 -3.4 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF2152 -1.6 -7.9 twitching motility protein PilH compare
GFF2563 -1.6 -10.4 Two-component system sensor histidine kinase compare
GFF5512 -1.6 -2.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF232 -1.5 -6.8 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF2505 -1.5 -5.9 hypothetical protein compare
GFF4023 -1.5 -2.2 no description compare
GFF255 -1.4 -2.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF1756 -1.4 -1.7 hypothetical protein compare
GFF2506 -1.4 -10.0 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF7289 -1.4 -1.7 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF3625 -1.4 -5.9 Ferredoxin, 2Fe-2S compare
GFF5509 -1.4 -3.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF5491 -1.4 -4.6 Peptide deformylase (EC 3.5.1.88) compare
GFF4000 -1.4 -5.0 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF5209 -1.3 -3.4 DUF1854 domain-containing protein compare
GFF4606 -1.3 -1.4 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF2354 -1.3 -7.7 FIG00555615: hypothetical protein compare
GFF6570 -1.3 -1.8 hypothetical protein compare
GFF6294 -1.3 -3.7 Cell division protein compare
GFF292 -1.3 -9.6 Tol-Pal system beta propeller repeat protein TolB compare
GFF3941 -1.2 -1.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF968 -1.2 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2838 -1.2 -1.9 hypothetical protein compare
GFF3960 -1.2 -5.8 3'-to-5' oligoribonuclease (orn) compare
GFF339 -1.2 -2.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF3600 -1.2 -2.7 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5325 -1.2 -1.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF1858 -1.2 -1.7 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF2341 -1.2 -1.6 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF168 -1.2 -6.1 MCP methyltransferase, CheR-type compare
GFF130 -1.1 -2.5 hypothetical protein compare
GFF6940 -1.1 -4.4 no description compare
GFF2949 -1.1 -1.4 no description compare
GFF291 -1.1 -6.2 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF575 -1.1 -6.4 Tol-Pal system protein TolQ compare
GFF3651 -1.1 -1.4 PTS system, IIA component compare
GFF4839 -1.1 -2.1 Transcriptional regulator PA2737, MerR family compare
GFF4748 -1.1 -1.8 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF1875 -1.1 -2.1 no description compare
GFF4119 -1.1 -1.6 no description compare
GFF497 -1.1 -4.9 Phytoene synthase (EC 2.5.1.32) compare
GFF815 -1.1 -2.6 COGs COG3777 compare
GFF865 -1.1 -1.5 hypothetical protein compare
GFF6949 -1.1 -2.0 no description compare
GFF5700 -1.1 -1.5 UPF0758 family protein compare
GFF5778 -1.0 -1.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF4137 -1.0 -3.2 Methionine ABC transporter substrate-binding protein compare
GFF967 -1.0 -8.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF549 -1.0 -3.7 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF531 -1.0 -8.5 hypothetical protein compare
GFF859 -1.0 -1.9 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF89 -1.0 -1.9 hypothetical protein compare
GFF6512 -1.0 -1.6 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF399 -1.0 -7.9 3'-to-5' exoribonuclease RNase R compare
GFF577 -1.0 -1.3 TolA protein compare
GFF5118 -1.0 -2.7 gluconolactonase family protein compare
GFF6963 -1.0 -2.6 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) compare
GFF3749 -1.0 -1.2 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF4557 -1.0 -3.6 Dihydroorotase (EC 3.5.2.3) compare
GFF1831 -1.0 -1.9 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 compare
GFF1789 -1.0 -2.3 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF5030 -1.0 -0.8 no description compare
GFF5411 -0.9 -7.6 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF1324 -0.9 -2.2 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF290 -0.9 -5.3 Cell division coordinator CpoB compare
GFF7238 -0.9 -1.6 no description compare
GFF2090 -0.9 -2.3 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF3152 -0.9 -2.4 hypothetical protein compare
GFF5727 -0.9 -1.4 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF6328 -0.9 -1.1 LPS-assembly lipoprotein LptE compare
GFF2523 -0.9 -2.2 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF649 -0.9 -6.6 no description compare
GFF576 -0.9 -2.7 Tol biopolymer transport system, TolR protein compare
GFF4254 -0.9 -1.6 hypothetical protein compare
GFF5383 -0.9 -1.6 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF3401 -0.9 -0.9 P-hydroxylaminobenzoate lyase compare
GFF1685 -0.9 -2.5 BUG/TctC family periplasmic protein compare
GFF6293 -0.9 -3.0 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1047 -0.9 -5.8 hypothetical protein compare
GFF5036 -0.9 -2.5 Opine oxidase subunit B compare
GFF2627 -0.9 -2.7 Chorismate synthase (EC 4.2.3.5) compare
GFF862 -0.8 -2.5 hypothetical protein compare
GFF1529 -0.8 -1.1 Transcriptional regulator, AcrR family compare
GFF4336 -0.8 -2.4 BUG/TctC family periplasmic protein compare
GFF6857 -0.8 -1.8 hypothetical protein compare
GFF2252 -0.8 -2.3 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF6128 -0.8 -1.6 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF4482 -0.8 -2.6 Transcriptional regulator MraZ compare
GFF6324 -0.8 -6.7 Kup system potassium uptake protein compare
GFF3845 -0.8 -3.5 Ribonuclease E (EC 3.1.26.12) compare
GFF3510 -0.8 -1.2 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF2393 -0.8 -2.3 Biopolymer transport protein ExbD/TolR compare
GFF5080 -0.8 -3.5 DNA recombination-dependent growth factor RdgC compare
GFF3130 -0.8 -1.4 hypothetical protein compare
GFF731 -0.8 -1.3 Transcriptional regulator, ArsR family compare
GFF651 -0.8 -4.8 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF3790 -0.8 -2.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF2481 -0.8 -1.1 Urease accessory protein UreF compare
GFF5914 -0.8 -1.7 hypothetical protein compare
GFF5619 -0.8 -3.1 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4878 -0.8 -1.9 putative lipoprotein compare
GFF2343 -0.8 -3.7 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF71 -0.8 -2.2 Aminoglycoside 3''-nucleotidyltransferase (EC 2.7.7.-) => ANT(3'')-Ia (AadA family) compare
GFF2741 -0.8 -3.1 FIG002207: Probable transmembrane protein compare
GFF1213 -0.8 -1.8 Oligopeptide transport permease protein OppB-like @ Glutathione ABC transporter, permease protein GsiC compare
GFF4145 -0.7 -1.0 transcriptional regulators-like protein compare
GFF491 -0.7 -3.4 no description compare
GFF2853 -0.7 -1.9 DNA-binding protein HU-beta compare
GFF3089 -0.7 -1.3 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF840 -0.7 -2.7 no description compare
GFF4006 -0.7 -4.7 DNA polymerase I (EC 2.7.7.7) compare
GFF3250 -0.7 -2.1 Barstar, ribonuclease (Barnase) inhibitor compare
GFF6988 -0.7 -2.2 Flagellar hook protein FlgE compare
GFF3013 -0.7 -1.9 KEGG: type VI secretion system secreted protein Hcp compare
GFF2815 -0.7 -1.5 Primosomal replication protein N compare
GFF1526 -0.7 -4.4 putative transmembrane sensor compare
GFF836 -0.7 -1.4 Vitamin B12 ABC transporter, substrate-binding protein BtuF compare
GFF4447 -0.7 -4.2 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF990 -0.7 -2.6 LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22) compare
GFF4107 -0.7 -1.2 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF3445 -0.7 -2.1 Cupin 2, conserved barrel compare
GFF970 -0.7 -4.7 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF2250 -0.7 -2.0 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
GFF551 -0.7 -5.4 Uncharacterized protein Tbd_1903 compare
GFF6618 -0.7 -1.0 Mlr6156 protein compare
GFF966 -0.7 -3.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1041 -0.7 -2.0 Transcriptional regulator, AsnC family compare
GFF488 -0.7 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2436 -0.7 -1.3 no description compare
GFF7378 -0.7 -0.9 protein of unknown function DUF1311 compare
GFF6083 -0.7 -1.4 hypothetical protein PA3071 compare
GFF7255 -0.7 -1.1 BUG/TctC family periplasmic protein compare
GFF2991 -0.7 -2.4 BUG/TctC family periplasmic protein compare
GFF799 -0.7 -1.1 Rrf2 family transcriptional regulator, group III compare
GFF3627 -0.7 -5.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF6930 -0.7 -1.8 no description compare
GFF3546 -0.7 -5.9 Chaperone protein HtpG compare
GFF3705 -0.7 -0.9 Amidases related to nicotinamidase compare
GFF127 -0.7 -1.4 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3043 -0.6 -1.3 Response regulator BaeR compare
GFF997 -0.6 -2.5 UPF0070 protein YfgM compare
GFF2394 -0.6 -2.4 MotA/TolQ/ExbB proton channel family protein compare
GFF4437 -0.6 -3.6 Low-complexity acidic protein, XCC2875 type compare
GFF5513 -0.6 -1.3 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF4033 -0.6 -1.1 no description compare
GFF6373 -0.6 -1.9 T6SS component TssA (ImpA) compare
GFF7335 -0.6 -0.8 no description compare
GFF3140 -0.6 -1.5 no description compare


Specific Phenotypes

For 1 genes in this experiment

For phage phage_bap4 in Variovorax sp. SCN45

For phage phage_bap4 across organisms