Experiment set2S346 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF5076 -5.1 -12.2 hypothetical protein compare
GFF372 -5.0 -5.9 PMID: 11481431 compare
GFF4625 -4.9 -5.9 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF371 -4.8 -3.3 RNA-binding protein YhbY compare
GFF6022 -4.8 -3.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF4626 -4.5 -6.8 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF6878 -4.2 -15.8 hypothetical protein compare
GFF239 -4.1 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6875 -4.1 -7.4 hypothetical protein compare
GFF6876 -3.8 -16.6 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF5267 -3.4 -4.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF409 -3.2 -6.1 Osmolarity sensory histidine kinase EnvZ compare
GFF3889 -3.2 -2.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2835 -3.1 -3.7 putative TonB-dependent receptor compare
GFF6036 -3.1 -8.4 DNA translocase FtsK compare
GFF1756 -2.8 -2.6 hypothetical protein compare
GFF3890 -2.6 -3.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2836 -2.6 -5.2 MotA/TolQ/ExbB proton channel family protein compare
GFF2734 -2.6 -7.2 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF408 -2.5 -2.7 Two-component system response regulator OmpR compare
GFF3624 -2.5 -13.6 Putative transmembrane protein compare
GFF4839 -2.5 -2.9 Transcriptional regulator PA2737, MerR family compare
GFF1119 -2.4 -5.9 Ribonuclease HI (EC 3.1.26.4) compare
GFF2730 -2.4 -3.9 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF240 -2.4 -10.2 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF4790 -2.4 -8.3 Nudix-related transcriptional regulator NrtR compare
GFF1105 -2.3 -3.8 Helicase compare
GFF6700 -2.3 -3.8 Single-stranded-DNA-specific exonuclease RecJ compare
GFF255 -2.2 -3.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5523 -2.2 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF3621 -2.2 -8.8 Magnesium and cobalt transport protein CorA compare
GFF5065 -2.2 -2.0 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF6328 -2.1 -1.8 LPS-assembly lipoprotein LptE compare
GFF5307 -2.0 -4.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF6042 -2.0 -5.0 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF339 -2.0 -3.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF2090 -2.0 -4.3 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF4454 -1.9 -5.9 Exoribonuclease II (EC 3.1.13.1) compare
GFF1984 -1.9 -2.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF2506 -1.9 -11.6 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF5208 -1.8 -10.5 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF2563 -1.7 -11.1 Two-component system sensor histidine kinase compare
GFF2354 -1.7 -9.2 FIG00555615: hypothetical protein compare
GFF5877 -1.7 -4.4 Probable proline rich signal peptide protein compare
GFF489 -1.7 -5.2 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3888 -1.7 -5.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3625 -1.7 -6.1 Ferredoxin, 2Fe-2S compare
GFF4000 -1.7 -6.1 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF5512 -1.6 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF576 -1.6 -3.5 Tol biopolymer transport system, TolR protein compare
GFF292 -1.6 -11.7 Tol-Pal system beta propeller repeat protein TolB compare
GFF2505 -1.6 -6.1 hypothetical protein compare
GFF773 -1.6 -2.0 hypothetical protein compare
GFF2627 -1.6 -4.2 Chorismate synthase (EC 4.2.3.5) compare
GFF7295 -1.5 -4.5 HPr kinase/phosphorylase compare
GFF5424 -1.5 -1.5 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF4748 -1.5 -2.0 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF2152 -1.5 -6.8 twitching motility protein PilH compare
GFF1559 -1.4 -2.0 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF232 -1.4 -6.6 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF575 -1.4 -7.6 Tol-Pal system protein TolQ compare
GFF577 -1.4 -2.8 TolA protein compare
GFF5876 -1.3 -6.7 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF236 -1.3 -6.4 Two-component transcriptional response regulator receiver domain compare
GFF4557 -1.3 -4.5 Dihydroorotase (EC 3.5.2.3) compare
GFF487 -1.3 -8.0 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4352 -1.3 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF5491 -1.3 -4.9 Peptide deformylase (EC 3.5.1.88) compare
GFF968 -1.3 -2.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2380 -1.3 -2.9 Protein phosphatase 2C-like compare
GFF291 -1.3 -6.5 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF4462 -1.3 -2.0 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF3394 -1.3 -1.5 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF5666 -1.2 -3.0 Prevent host death protein, Phd antitoxin compare
GFF1106 -1.2 -2.8 UvrD/REP helicase compare
GFF531 -1.2 -9.4 hypothetical protein compare
GFF4106 -1.2 -1.4 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF4120 -1.2 -1.9 no description compare
GFF3960 -1.2 -6.1 3'-to-5' oligoribonuclease (orn) compare
GFF5209 -1.1 -3.1 DUF1854 domain-containing protein compare
GFF944 -1.1 -2.1 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3401 -1.1 -0.9 P-hydroxylaminobenzoate lyase compare
GFF6512 -1.1 -1.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF3377 -1.1 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF6998 -1.1 -1.0 Flagellar basal-body rod protein FlgB compare
GFF6293 -1.1 -3.7 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF5411 -1.1 -8.2 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF4469 -1.1 -1.6 Cell division protein FtsA compare
GFF651 -1.1 -5.7 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF6294 -1.1 -3.3 Cell division protein compare
GFF302 -1.1 -1.4 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF1047 -1.1 -6.6 hypothetical protein compare
GFF399 -1.1 -8.5 3'-to-5' exoribonuclease RNase R compare
GFF3651 -1.0 -1.5 PTS system, IIA component compare
GFF497 -1.0 -4.9 Phytoene synthase (EC 2.5.1.32) compare
GFF7239 -1.0 -1.5 Repair of Iron Centers di-iron protein compare
GFF3085 -1.0 -2.5 no description compare
GFF2239 -1.0 -1.3 no description compare
GFF168 -1.0 -5.3 MCP methyltransferase, CheR-type compare
GFF967 -1.0 -7.7 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2843 -1.0 -7.8 Murein hydrolase activator NlpD compare
GFF3928 -1.0 -1.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF3043 -1.0 -1.9 Response regulator BaeR compare
GFF2533 -1.0 -2.6 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF1858 -0.9 -1.5 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF3600 -0.9 -2.3 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF5036 -0.9 -3.6 Opine oxidase subunit B compare
GFF2252 -0.9 -2.8 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF4203 -0.9 -1.8 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF6868 -0.9 -3.1 SAM-dependent methyltransferase compare
GFF3952 -0.9 -2.6 LSU ribosomal protein L19p compare
GFF2436 -0.9 -1.9 no description compare
GFF1602 -0.9 -1.7 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF4766 -0.9 -1.1 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 compare
GFF551 -0.9 -6.7 Uncharacterized protein Tbd_1903 compare
GFF7321 -0.9 -1.6 Sensor histidine kinase GlrK compare
GFF6555 -0.9 -1.2 no description compare
GFF966 -0.9 -4.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF5513 -0.9 -1.7 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF3425 -0.9 -1.2 no description compare
GFF5325 -0.8 -1.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF290 -0.8 -4.6 Cell division coordinator CpoB compare
GFF6839 -0.8 -1.5 hypothetical protein compare
GFF4073 -0.8 -2.1 Copper tolerance protein compare
GFF6006 -0.8 -1.3 BUG/TctC family periplasmic protein compare
GFF2251 -0.8 -2.0 no description compare
GFF177 -0.8 -1.5 Glutamine ABC transporter, ATP-binding protein GlnQ compare
GFF3956 -0.8 -1.8 no description compare
GFF6083 -0.8 -1.9 hypothetical protein PA3071 compare
GFF2947 -0.8 -2.3 3'-5' exonuclease compare
GFF7362 -0.8 -2.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF431 -0.8 -1.8 Esterase/lipase compare
GFF2894 -0.8 -1.8 Transcriptional regulator, GntR family compare
GFF4119 -0.8 -1.3 no description compare
GFF6324 -0.8 -6.2 Kup system potassium uptake protein compare
GFF6491 -0.8 -3.4 SAM-dependent methyltransferase compare
GFF3250 -0.7 -1.1 Barstar, ribonuclease (Barnase) inhibitor compare
GFF2823 -0.7 -1.4 Hemin transport protein HmuS compare
GFF3389 -0.7 -1.9 Glycosyl transferases, related to UDP-glucuronosyltransferase compare
GFF1966 -0.7 -4.8 Apolipoprotein N-acyltransferase / Copper homeostasis protein CutE compare
GFF649 -0.7 -5.5 no description compare
GFF4447 -0.7 -4.3 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF859 -0.7 -1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF2262 -0.7 -1.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF2343 -0.7 -3.5 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF2831 -0.7 -2.1 FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated compare
GFF5927 -0.7 -1.5 3-oxoacyl-[ACP] synthase compare
GFF1957 -0.7 -1.4 no description compare
GFF5080 -0.7 -3.4 DNA recombination-dependent growth factor RdgC compare
GFF2280 -0.7 -2.8 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3366 -0.7 -3.9 Septum site-determining protein MinD compare
GFF5756 -0.7 -1.6 KEGG: flagellar protein FliT compare
GFF3790 -0.7 -2.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF4438 -0.7 -2.8 Sugar kinases, ribokinase family compare
GFF2073 -0.7 -2.5 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF219 -0.7 -2.4 GTP-binding protein TypA/BipA compare
GFF3618 -0.7 -5.5 Transcriptional regulator, LysR family compare
GFF5057 -0.7 -5.9 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF1829 -0.7 -1.3 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
GFF7188 -0.7 -1.6 Uncharacterized methyltransferase PA1407 compare
GFF77 -0.7 -1.8 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF997 -0.7 -2.6 UPF0070 protein YfgM compare
GFF163 -0.7 -1.7 no description compare
GFF3510 -0.7 -1.0 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF3380 -0.7 -2.1 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) compare
GFF3584 -0.7 -1.1 hypothetical protein compare
GFF2157 -0.7 -3.8 UPF0301 protein YqgE compare
GFF3166 -0.6 -1.3 Transcriptional regulator, IclR family compare
GFF6999 -0.6 -1.0 Flagellar P-ring protein FlgI compare
GFF782 -0.6 -2.2 Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33) compare
GFF1741 -0.6 -2.0 UPF0324 inner membrane protein YeiH compare
GFF4317 -0.6 -1.3 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF6710 -0.6 -1.7 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF633 -0.6 -1.4 Urea ABC transporter, ATPase protein UrtD compare
GFF4490 -0.6 -2.8 Site-specific tyrosine recombinase XerC compare
GFF3627 -0.6 -5.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF4319 -0.6 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF3050 -0.6 -1.1 Lactam utilization protein LamB compare
GFF6869 -0.6 -3.1 no description compare
GFF4233 -0.6 -2.8 no description compare
GFF3546 -0.6 -5.7 Chaperone protein HtpG compare
GFF5534 -0.6 -2.3 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF1349 -0.6 -1.9 Thioesterase compare
GFF1298 -0.6 -2.6 Cell division protein compare
GFF923 -0.6 -2.2 Chromosome partition protein smc compare
GFF3165 -0.6 -1.7 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF2926 -0.6 -2.5 FIG00349048: hypothetical protein compare
GFF4057 -0.6 -1.1 Copper/silver efflux RND transporter, membrane fusion protein CusB compare
GFF6465 -0.6 -1.4 hypothetical protein compare
GFF6834 -0.6 -1.9 no description compare
GFF1780 -0.6 -2.0 hypothetical protein compare
GFF3649 -0.6 -4.4 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF4366 -0.6 -1.9 BUG/TctC family periplasmic protein compare
GFF2740 -0.6 -3.8 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF7339 -0.6 -0.7 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF970 -0.6 -3.8 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1932 -0.6 -1.6 no description compare
GFF3620 -0.6 -2.7 hypothetical protein compare
GFF2844 -0.6 -3.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF5509 -0.6 -2.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms