Experiment set2S345 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF4625 -4.9 -5.9 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.33) compare
GFF4626 -4.9 -6.7 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF372 -4.9 -5.8 PMID: 11481431 compare
GFF371 -4.8 -3.3 RNA-binding protein YhbY compare
GFF5076 -4.5 -14.0 hypothetical protein compare
GFF6022 -4.3 -7.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF408 -4.1 -2.8 Two-component system response regulator OmpR compare
GFF239 -4.1 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6878 -4.0 -17.4 hypothetical protein compare
GFF5267 -4.0 -2.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF6876 -4.0 -17.1 Aminotransferase, DegT/DnrJ/EryC1/StrS family compare
GFF6875 -3.9 -8.7 hypothetical protein compare
GFF6036 -3.5 -7.7 DNA translocase FtsK compare
GFF2836 -3.3 -4.5 MotA/TolQ/ExbB proton channel family protein compare
GFF3889 -3.2 -2.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2835 -3.0 -4.1 putative TonB-dependent receptor compare
GFF5424 -3.0 -2.8 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF255 -2.9 -2.8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF3624 -2.9 -15.3 Putative transmembrane protein compare
GFF6328 -2.9 -2.1 LPS-assembly lipoprotein LptE compare
GFF409 -2.9 -6.8 Osmolarity sensory histidine kinase EnvZ compare
GFF2730 -2.9 -3.8 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF3888 -2.8 -6.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5065 -2.7 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF4790 -2.7 -8.2 Nudix-related transcriptional regulator NrtR compare
GFF5307 -2.7 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF3621 -2.6 -10.7 Magnesium and cobalt transport protein CorA compare
GFF5209 -2.5 -4.4 DUF1854 domain-containing protein compare
GFF240 -2.4 -11.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF1119 -2.4 -6.1 Ribonuclease HI (EC 3.1.26.4) compare
GFF7295 -2.3 -4.7 HPr kinase/phosphorylase compare
GFF489 -2.2 -6.1 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF6358 -2.2 -1.9 T6SS protein serine/threonine phosphatase PppA compare
GFF6700 -2.2 -3.9 Single-stranded-DNA-specific exonuclease RecJ compare
GFF577 -2.2 -3.5 TolA protein compare
GFF6042 -2.1 -4.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5877 -2.0 -5.0 Probable proline rich signal peptide protein compare
GFF339 -2.0 -3.9 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF1105 -2.0 -3.4 Helicase compare
GFF5324 -1.9 -3.0 Shikimate kinase I (EC 2.7.1.71) compare
GFF5325 -1.9 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2734 -1.9 -6.7 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF2563 -1.9 -11.5 Two-component system sensor histidine kinase compare
GFF3651 -1.8 -2.1 PTS system, IIA component compare
GFF2380 -1.8 -4.6 Protein phosphatase 2C-like compare
GFF5523 -1.8 -1.7 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1219 -1.8 -2.5 SAM-dependent methyltransferase compare
GFF3890 -1.8 -3.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF4000 -1.8 -6.4 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF3089 -1.8 -2.6 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF2505 -1.8 -6.6 hypothetical protein compare
GFF3625 -1.8 -7.3 Ferredoxin, 2Fe-2S compare
GFF2152 -1.7 -8.8 twitching motility protein PilH compare
GFF5208 -1.7 -10.8 Efflux ABC transporter, permease/ATP-binding protein Reut_A2584 compare
GFF2506 -1.7 -11.4 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF6294 -1.7 -4.6 Cell division protein compare
GFF6293 -1.7 -4.8 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1984 -1.6 -2.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare
GFF236 -1.5 -8.2 Two-component transcriptional response regulator receiver domain compare
GFF2354 -1.5 -7.0 FIG00555615: hypothetical protein compare
GFF4454 -1.5 -5.4 Exoribonuclease II (EC 3.1.13.1) compare
GFF232 -1.4 -6.7 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF575 -1.4 -7.8 Tol-Pal system protein TolQ compare
GFF292 -1.4 -10.8 Tol-Pal system beta propeller repeat protein TolB compare
GFF2815 -1.4 -2.6 Primosomal replication protein N compare
GFF1047 -1.4 -8.9 hypothetical protein compare
GFF5876 -1.4 -7.0 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6512 -1.4 -2.0 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF291 -1.3 -7.3 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF487 -1.3 -8.2 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF944 -1.3 -2.3 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF3600 -1.3 -3.0 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF6868 -1.3 -3.9 SAM-dependent methyltransferase compare
GFF4748 -1.3 -2.0 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF968 -1.3 -2.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5491 -1.2 -4.4 Peptide deformylase (EC 3.5.1.88) compare
GFF576 -1.2 -3.0 Tol biopolymer transport system, TolR protein compare
GFF1106 -1.2 -2.5 UvrD/REP helicase compare
GFF4839 -1.2 -2.2 Transcriptional regulator PA2737, MerR family compare
GFF2853 -1.2 -2.7 DNA-binding protein HU-beta compare
GFF3960 -1.2 -5.7 3'-to-5' oligoribonuclease (orn) compare
GFF7221 -1.1 -2.7 Protein lysine acetyltransferase Pat (EC 2.3.1.-) compare
GFF3377 -1.1 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF5666 -1.1 -3.3 Prevent host death protein, Phd antitoxin compare
GFF531 -1.1 -9.2 hypothetical protein compare
GFF290 -1.1 -5.7 Cell division coordinator CpoB compare
GFF5411 -1.1 -8.6 CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily compare
GFF2073 -1.1 -3.7 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF1756 -1.1 -1.3 hypothetical protein compare
GFF4145 -1.1 -1.4 transcriptional regulators-like protein compare
GFF4557 -1.1 -4.1 Dihydroorotase (EC 3.5.2.3) compare
GFF6083 -1.1 -1.6 hypothetical protein PA3071 compare
GFF651 -1.1 -6.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF168 -1.1 -5.7 MCP methyltransferase, CheR-type compare
GFF7231 -1.1 -1.6 no description compare
GFF3980 -1.1 -1.7 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-) compare
GFF399 -1.1 -8.4 3'-to-5' exoribonuclease RNase R compare
GFF7076 -1.0 -2.4 no description compare
GFF6015 -1.0 -2.2 Transcriptional regulator PA0877, LysR family compare
GFF1742 -1.0 -1.2 hypothetical protein compare
GFF5512 -1.0 -2.2 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2104 -1.0 -2.0 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) compare
GFF1324 -1.0 -2.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF303 -1.0 -3.5 Probable transcriptional regulatory protein YebC compare
GFF967 -1.0 -7.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF3790 -1.0 -3.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF219 -1.0 -3.3 GTP-binding protein TypA/BipA compare
GFF1600 -1.0 -1.7 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) compare
GFF5097 -0.9 -2.0 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) compare
GFF4006 -0.9 -5.4 DNA polymerase I (EC 2.7.7.7) compare
GFF2843 -0.9 -7.4 Murein hydrolase activator NlpD compare
GFF4352 -0.9 -1.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF1884 -0.9 -2.3 Gluconokinase (EC 2.7.1.12) compare
GFF4305 -0.9 -1.2 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF6397 -0.9 -1.3 LysR family transcriptional regulator PA2758 compare
GFF1829 -0.9 -1.8 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
GFF4560 -0.9 -1.0 hypothetical protein compare
GFF2252 -0.9 -2.3 RNA-2',3'-PO4:RNA-5'-OH ligase compare
GFF4203 -0.9 -1.6 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF4825 -0.9 -3.3 SWIB/MDM2 domain-containing proteins compare
GFF2819 -0.8 -1.9 Phosphoenolpyruvate synthase regulatory protein compare
GFF7368 -0.8 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1858 -0.8 -1.4 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF551 -0.8 -6.5 Uncharacterized protein Tbd_1903 compare
GFF6174 -0.8 -1.3 Fluoride ion transporter CrcB compare
GFF3250 -0.8 -2.4 Barstar, ribonuclease (Barnase) inhibitor compare
GFF549 -0.8 -2.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF2701 -0.8 -2.2 CaiB/BaiF family protein compare
GFF3620 -0.8 -2.9 hypothetical protein compare
GFF2090 -0.8 -2.5 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF5080 -0.8 -4.0 DNA recombination-dependent growth factor RdgC compare
GFF3425 -0.8 -1.5 no description compare
GFF1625 -0.8 -1.7 Transcriptional regulator, LysR family compare
GFF4482 -0.8 -2.2 Transcriptional regulator MraZ compare
GFF3160 -0.7 -1.8 Transcriptional regulator YeiE, LysR family compare
GFF3845 -0.7 -2.8 Ribonuclease E (EC 3.1.26.12) compare
GFF5746 -0.7 -1.7 Flagellar protein FliJ compare
GFF3928 -0.7 -1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF6324 -0.7 -6.0 Kup system potassium uptake protein compare
GFF3546 -0.7 -6.5 Chaperone protein HtpG compare
GFF4121 -0.7 -2.2 no description compare
GFF2844 -0.7 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF5057 -0.7 -6.4 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF966 -0.7 -3.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3941 -0.7 -1.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2627 -0.7 -2.5 Chorismate synthase (EC 4.2.3.5) compare
GFF7263 -0.7 -2.2 Malate dehydrogenase (EC 1.1.1.37) compare
GFF3925 -0.7 -1.8 hypothetical protein compare
GFF3618 -0.7 -5.5 Transcriptional regulator, LysR family compare
GFF1602 -0.7 -1.3 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF5372 -0.7 -2.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF4175 -0.7 -2.1 FMN reductase (NADH) (EC 1.5.1.42) compare
GFF5458 -0.7 -2.1 D-erythronate dehydrogenase (NAD+) compare
GFF1526 -0.7 -4.2 putative transmembrane sensor compare
GFF3265 -0.7 -1.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF4447 -0.7 -4.2 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF3320 -0.7 -1.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF3627 -0.7 -6.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF2533 -0.7 -2.1 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF1434 -0.7 -1.2 hypothetical protein compare
GFF488 -0.7 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2457 -0.7 -1.7 no description compare
GFF6465 -0.7 -1.5 hypothetical protein compare
GFF4164 -0.6 -1.7 Thymidine phosphorylase (EC 2.4.2.4) compare
GFF431 -0.6 -1.5 Esterase/lipase compare
GFF4132 -0.6 -2.2 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
GFF4304 -0.6 -1.2 Cyclohexanecarboxylate--CoA ligase compare
GFF2231 -0.6 -1.4 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) compare
GFF2565 -0.6 -2.6 Two-component transcriptional response regulator receiver domain compare
GFF4708 -0.6 -1.1 Transcriptional regulator RSp1267, LysR family compare
GFF7251 -0.6 -0.8 Mobile element protein compare
GFF3206 -0.6 -1.3 no description compare
GFF7078 -0.6 -1.1 no description compare
GFF3776 -0.6 -1.8 no description compare
GFF4801 -0.6 -3.1 DedA protein compare
GFF497 -0.6 -3.2 Phytoene synthase (EC 2.5.1.32) compare
GFF4710 -0.6 -1.1 MutT/Nudix family protein compare
GFF5601 -0.6 -1.6 Predicted hydrolase of the alpha/beta-hydrolase fold compare
GFF5733 -0.6 -1.4 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF341 -0.6 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2262 -0.6 -1.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF5615 -0.6 -2.0 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2343 -0.6 -3.0 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF694 -0.6 -1.2 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) compare
GFF2949 -0.6 -0.7 no description compare
GFF5789 -0.6 -3.3 YciO protein, TsaC/YrdC paralog compare
GFF3649 -0.6 -4.5 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF289 -0.6 -3.0 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 compare
GFF5917 -0.6 -1.9 T6SS component TssB (ImpB/VipA) compare
GFF6175 -0.6 -1.3 hypothetical protein compare
GFF4156 -0.6 -2.2 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF2740 -0.6 -3.8 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF7226 -0.6 -2.6 hypothetical protein compare
GFF302 -0.6 -0.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF4211 -0.6 -2.3 Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) compare
GFF2831 -0.6 -1.8 FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated compare
GFF7361 -0.6 -2.1 Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI) compare
GFF1069 -0.6 -1.9 hypothetical protein compare
GFF5318 -0.6 -5.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
GFF6439 -0.6 -1.1 Transcriptional regulator, LysR family compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms