Experiment set2S344 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF4216 -4.0 -2.1 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF6512 -3.7 -2.5 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF5424 -3.4 -2.3 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF239 -2.8 -2.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6397 -2.5 -2.9 LysR family transcriptional regulator PA2758 compare
GFF2836 -2.5 -3.8 MotA/TolQ/ExbB proton channel family protein compare
GFF1756 -2.5 -2.3 hypothetical protein compare
GFF2835 -2.4 -3.3 putative TonB-dependent receptor compare
GFF3889 -2.3 -2.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5065 -2.2 -1.5 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF1105 -2.1 -3.2 Helicase compare
GFF1119 -2.0 -5.0 Ribonuclease HI (EC 3.1.26.4) compare
GFF1106 -1.8 -2.9 UvrD/REP helicase compare
GFF6328 -1.8 -1.6 LPS-assembly lipoprotein LptE compare
GFF408 -1.8 -2.0 Two-component system response regulator OmpR compare
GFF3888 -1.8 -4.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF255 -1.7 -2.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5512 -1.7 -2.3 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF5307 -1.7 -3.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF4557 -1.6 -4.0 Dihydroorotase (EC 3.5.2.3) compare
GFF6161 -1.5 -1.8 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF302 -1.5 -1.0 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF409 -1.4 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF6787 -1.4 -1.8 Copper tolerance protein compare
GFF1559 -1.4 -1.9 Mg(2+)-transport-ATPase-associated protein MgtC compare
GFF7063 -1.4 -2.1 Antibiotic biosynthesis monooxygenase compare
GFF339 -1.3 -2.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF7321 -1.3 -2.0 Sensor histidine kinase GlrK compare
GFF3890 -1.3 -2.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2804 -1.3 -2.2 Membrane protein compare
GFF7295 -1.2 -3.4 HPr kinase/phosphorylase compare
GFF5523 -1.2 -1.1 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF4748 -1.2 -1.9 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF2730 -1.2 -2.3 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF240 -1.2 -6.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF6692 -1.2 -1.6 no description compare
GFF859 -1.2 -1.7 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF487 -1.2 -6.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3651 -1.2 -1.4 PTS system, IIA component compare
GFF2505 -1.2 -4.4 hypothetical protein compare
GFF2173 -1.1 -1.1 no description compare
GFF6700 -1.1 -2.2 Single-stranded-DNA-specific exonuclease RecJ compare
GFF1324 -1.1 -2.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF970 -1.1 -6.7 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3425 -1.1 -2.2 no description compare
GFF5701 -1.1 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF2354 -1.1 -5.5 FIG00555615: hypothetical protein compare
GFF6324 -1.1 -8.0 Kup system potassium uptake protein compare
GFF5877 -1.0 -3.0 Probable proline rich signal peptide protein compare
GFF967 -1.0 -7.8 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF7348 -1.0 -1.6 Oxidoreductase, aldo/keto reductase family compare
GFF5361 -1.0 -1.0 FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
GFF6246 -1.0 -3.4 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF7393 -1.0 -1.9 Mobile element protein compare
GFF5491 -1.0 -3.5 Peptide deformylase (EC 3.5.1.88) compare
GFF3941 -1.0 -1.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3576 -1.0 -1.5 no description compare
GFF2894 -1.0 -1.8 Transcriptional regulator, GntR family compare
GFF968 -1.0 -1.7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3912 -1.0 -2.6 Ferrous iron transport permease EfeU compare
GFF868 -1.0 -1.5 Uracil-DNA glycosylase, family 1 compare
GFF2152 -0.9 -5.0 twitching motility protein PilH compare
GFF2949 -0.9 -1.5 no description compare
GFF3093 -0.9 -3.2 FIG138056: a glutathione-dependent thiol reductase compare
GFF807 -0.9 -2.1 FIG00003370: Multicopper polyphenol oxidase compare
GFF2506 -0.9 -6.6 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF6036 -0.9 -4.2 DNA translocase FtsK compare
GFF3928 -0.9 -1.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF6930 -0.9 -1.6 no description compare
GFF341 -0.9 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2533 -0.9 -2.2 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF5876 -0.9 -4.3 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF5700 -0.9 -1.0 UPF0758 family protein compare
GFF489 -0.9 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF3034 -0.9 -1.2 no description compare
GFF531 -0.9 -6.8 hypothetical protein compare
GFF3984 -0.8 -1.3 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF4317 -0.8 -1.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF3854 -0.8 -1.7 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF232 -0.8 -3.8 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF966 -0.8 -4.1 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF6515 -0.8 -2.9 no description compare
GFF3892 -0.8 -1.6 no description compare
GFF156 -0.8 -2.3 Glycosyl transferase, group 2 family compare
GFF5513 -0.8 -1.4 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF6294 -0.8 -2.4 Cell division protein compare
GFF5203 -0.8 -1.3 hypothetical protein compare
GFF317 -0.8 -1.2 Acyl carrier protein compare
GFF4273 -0.8 -1.8 BUG/TctC family periplasmic protein compare
GFF1603 -0.8 -1.0 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF6465 -0.8 -1.6 hypothetical protein compare
GFF3874 -0.8 -1.4 Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) compare
GFF994 -0.8 -2.5 Cytoskeleton protein RodZ compare
GFF2691 -0.8 -2.0 no description compare
GFF5333 -0.7 -1.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF799 -0.7 -1.2 Rrf2 family transcriptional regulator, group III compare
GFF1228 -0.7 -1.3 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
GFF3600 -0.7 -1.7 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF1192 -0.7 -1.1 no description compare
GFF1434 -0.7 -1.6 hypothetical protein compare
GFF3250 -0.7 -1.9 Barstar, ribonuclease (Barnase) inhibitor compare
GFF1188 -0.7 -1.4 Thiazole synthase (EC 2.8.1.10) compare
GFF4415 -0.7 -2.1 Conjugative transfer protein TrbC compare
GFF7231 -0.7 -0.7 no description compare
GFF4000 -0.7 -2.9 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF2823 -0.7 -1.6 Hemin transport protein HmuS compare
GFF4203 -0.7 -1.4 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF6751 -0.7 -2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF4606 -0.7 -0.8 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF549 -0.7 -2.2 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
GFF1530 -0.7 -2.0 Nucleoside-diphosphate-sugar epimerases compare
GFF838 -0.7 -2.0 hypothetical protein compare
GFF4250 -0.7 -2.0 Transcriptional regulator, AcrR family compare
GFF982 -0.7 -5.1 Cell division protein ZapE compare
GFF3649 -0.7 -4.7 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF3870 -0.7 -2.7 Ribonuclease III (EC 3.1.26.3) compare
GFF6532 -0.7 -3.2 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) compare
GFF1778 -0.7 -2.1 Transcriptional regulator, HxlR family compare
GFF1113 -0.7 -1.1 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF506 -0.7 -1.2 hypothetical protein compare
GFF3146 -0.7 -1.2 no description compare
GFF6862 -0.7 -3.0 Two-component system sensor histidine kinase compare
GFF4457 -0.7 -2.5 Monofunctional biosynthetic peptidoglycan transglycosylase compare
GFF4292 -0.7 -1.6 no description compare
GFF1730 -0.6 -1.9 Dihydrofolate reductase homolog compare
GFF3885 -0.6 -3.2 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) compare
GFF491 -0.6 -2.7 no description compare
GFF375 -0.6 -4.6 hypothetical protein compare
GFF6618 -0.6 -1.5 Mlr6156 protein compare
GFF7312 -0.6 -1.8 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF2262 -0.6 -1.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF5509 -0.6 -1.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF598 -0.6 -1.0 no description compare
GFF1625 -0.6 -1.0 Transcriptional regulator, LysR family compare
GFF5720 -0.6 -1.5 Flagellar basal-body rod protein FlgG compare
GFF3905 -0.6 -1.6 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF2740 -0.6 -4.1 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF4447 -0.6 -3.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF1013 -0.6 -1.0 hypothetical protein compare
GFF685 -0.6 -1.6 Tricarboxylate transport protein TctC compare
GFF7352 -0.6 -1.7 1,2-phenylacetyl-CoA epoxidase, subunit D (EC 1.14.13.149) compare
GFF6704 -0.6 -1.3 no description compare
GFF2815 -0.6 -1.2 Primosomal replication protein N compare
GFF5941 -0.6 -0.8 hypothetical protein compare
GFF2333 -0.6 -2.5 hypothetical protein compare
GFF4991 -0.6 -0.9 Polyhydroxyalkanoate granule-associated protein PhaF compare
GFF4718 -0.6 -2.0 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
GFF4433 -0.6 -3.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
GFF3903 -0.6 -2.7 Similar to citrate lyase beta chain, 10 compare
GFF5369 -0.6 -1.1 Large-conductance mechanosensitive channel compare
GFF310 -0.6 -1.2 FIG025233: SAM-dependent methyltransferases compare
GFF490 -0.6 -3.8 Cell division trigger factor (EC 5.2.1.8) compare
GFF6896 -0.6 -2.8 pyridoxal-phosphate dependent enzyme family protein compare
GFF6374 -0.6 -0.9 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF6121 -0.6 -1.2 FIG003461: hypothetical protein compare
GFF2090 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF7217 -0.6 -1.5 hypothetical protein compare
GFF5057 -0.6 -5.0 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF4966 -0.6 -1.5 no description compare
GFF6848 -0.6 -1.3 Biopolymer transport protein ExbD/TolR compare
GFF87 -0.6 -1.5 no description compare
GFF2725 -0.6 -1.3 Isochorismatase (EC 3.3.2.1) compare
GFF3937 -0.6 -2.1 Transcriptional regulator, AraC family compare
GFF3416 -0.6 -1.3 Alkanesulfonates transport system permease protein compare
GFF3934 -0.6 -1.6 PhnB protein compare
GFF3864 -0.6 -2.2 Sigma factor RpoE negative regulatory protein RseA compare
GFF2803 -0.6 -2.3 Alanine transaminase (EC 2.6.1.2) compare
GFF5334 -0.6 -3.0 Phospholipid ABC transporter ATP-binding protein MlaF compare
GFF6293 -0.6 -1.8 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1649 -0.6 -1.5 hypothetical protein compare
GFF6963 -0.6 -1.7 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) compare
GFF4156 -0.6 -1.5 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF3433 -0.6 -2.6 hypothetical protein compare
GFF1207 -0.5 -2.6 no description compare
GFF6443 -0.5 -1.6 no description compare
GFF3438 -0.5 -0.9 Amidohydrolase family protein compare
GFF6383 -0.5 -1.0 FIG00440100: hypothetical protein compare
GFF5982 -0.5 -1.6 Transcriptional regulator, AcrR family compare
GFF6128 -0.5 -1.2 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF4198 -0.5 -2.9 putative LuxA compare
GFF5092 -0.5 -1.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF1222 -0.5 -1.9 Methylglyoxal synthase (EC 4.2.3.3) compare
GFF6546 -0.5 -1.4 hypothetical protein compare
GFF2431 -0.5 -1.6 RNA polymerase ECF-type sigma factor compare
GFF4223 -0.5 -2.3 BUG/TctC family periplasmic protein compare
GFF944 -0.5 -0.9 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF2343 -0.5 -2.4 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) compare
GFF2380 -0.5 -1.7 Protein phosphatase 2C-like compare
GFF7362 -0.5 -1.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF7289 -0.5 -0.9 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) compare
GFF6428 -0.5 -1.2 Glyoxalase/bleomycin resistance protein/dioxygenase compare
GFF926 -0.5 -3.0 Transcriptional regulator, AcrR family compare
GFF5023 -0.5 -3.9 Ammonium transporter compare
GFF3530 -0.5 -2.4 Pseudouridine synthase compare
GFF7265 -0.5 -2.1 hypothetical protein, not 6-phosphogluconolactonase compare
GFF2046 -0.5 -1.8 no description compare
GFF988 -0.5 -2.8 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) compare
GFF7091 -0.5 -1.6 no description compare
GFF5452 -0.5 -2.4 no description compare
GFF1984 -0.5 -0.9 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms