Experiment set2S342 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF239 -3.5 -2.4 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF6512 -3.0 -2.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF408 -2.4 -2.3 Two-component system response regulator OmpR compare
GFF3401 -2.3 -2.2 P-hydroxylaminobenzoate lyase compare
GFF5307 -2.3 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF2836 -2.2 -4.8 MotA/TolQ/ExbB proton channel family protein compare
GFF3890 -2.1 -2.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF255 -1.9 -2.2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF5065 -1.8 -1.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF3957 -1.7 -2.8 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF6294 -1.7 -4.2 Cell division protein compare
GFF2835 -1.7 -3.4 putative TonB-dependent receptor compare
GFF6221 -1.7 -1.5 T6SS associated component TagF (ImpM) compare
GFF4748 -1.6 -2.4 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF409 -1.6 -4.9 Osmolarity sensory histidine kinase EnvZ compare
GFF339 -1.6 -3.0 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF489 -1.6 -4.3 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF4839 -1.5 -2.4 Transcriptional regulator PA2737, MerR family compare
GFF1119 -1.5 -4.5 Ribonuclease HI (EC 3.1.26.4) compare
GFF5512 -1.5 -2.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2505 -1.5 -5.3 hypothetical protein compare
GFF7044 -1.5 -2.3 Inner membrane protein YedI compare
GFF6700 -1.5 -3.1 Single-stranded-DNA-specific exonuclease RecJ compare
GFF3510 -1.5 -1.7 Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system compare
GFF6036 -1.4 -6.0 DNA translocase FtsK compare
GFF2506 -1.4 -9.3 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF378 -1.4 -2.3 RNA (nucleoside 2'-O)-methyltransferase compare
GFF3377 -1.3 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) @ Enoyl-CoA hydratase EchA5 (EC 4.2.1.17) compare
GFF3889 -1.3 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3888 -1.3 -4.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2949 -1.2 -1.6 no description compare
GFF2380 -1.2 -3.3 Protein phosphatase 2C-like compare
GFF531 -1.2 -9.3 hypothetical protein compare
GFF7077 -1.2 -2.1 no description compare
GFF3250 -1.1 -2.9 Barstar, ribonuclease (Barnase) inhibitor compare
GFF4000 -1.1 -4.4 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF3952 -1.1 -2.5 LSU ribosomal protein L19p compare
GFF3394 -1.1 -1.3 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF2262 -1.1 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF1105 -1.1 -2.3 Helicase compare
GFF2354 -1.1 -5.8 FIG00555615: hypothetical protein compare
GFF2152 -1.1 -5.2 twitching motility protein PilH compare
GFF7295 -1.1 -3.2 HPr kinase/phosphorylase compare
GFF5746 -1.1 -1.5 Flagellar protein FliJ compare
GFF3651 -1.1 -1.4 PTS system, IIA component compare
GFF5424 -1.1 -1.4 Membrane protein TerC, possibly involved in tellurium resistance compare
GFF968 -1.1 -2.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF6374 -1.1 -1.4 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF577 -1.1 -2.1 TolA protein compare
GFF4415 -1.0 -1.7 Conjugative transfer protein TrbC compare
GFF240 -1.0 -5.4 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF5877 -1.0 -3.1 Probable proline rich signal peptide protein compare
GFF4557 -1.0 -3.5 Dihydroorotase (EC 3.5.2.3) compare
GFF3034 -1.0 -1.3 no description compare
GFF6997 -1.0 -1.2 Flagellar basal-body rod protein FlgC compare
GFF5941 -1.0 -1.2 hypothetical protein compare
GFF7294 -1.0 -2.5 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF5513 -1.0 -1.7 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF4305 -1.0 -1.2 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF487 -1.0 -5.7 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2367 -1.0 -1.2 Transcriptional regulator, LysR family compare
GFF6963 -1.0 -2.7 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) compare
GFF6713 -1.0 -2.5 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF2730 -1.0 -2.1 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF5958 -0.9 -2.0 FIG00537018: hypothetical protein compare
GFF3229 -0.9 -1.3 hypothetical protein compare
GFF6015 -0.9 -1.9 Transcriptional regulator PA0877, LysR family compare
GFF2740 -0.9 -5.1 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF967 -0.9 -7.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF6324 -0.9 -7.2 Kup system potassium uptake protein compare
GFF7206 -0.9 -2.1 no description compare
GFF5876 -0.9 -4.6 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3089 -0.9 -1.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF6532 -0.9 -4.3 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) compare
GFF5325 -0.9 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF1775 -0.9 -1.0 no description compare
GFF2562 -0.9 -1.0 UPF0391 membrane protein RGE_28580 compare
GFF6083 -0.9 -1.3 hypothetical protein PA3071 compare
GFF7204 -0.9 -2.7 no description compare
GFF232 -0.9 -4.1 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF4133 -0.8 -1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
GFF1625 -0.8 -1.9 Transcriptional regulator, LysR family compare
GFF5076 -0.8 -6.5 hypothetical protein compare
GFF302 -0.8 -0.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3715 -0.8 -1.6 Probable malonic semialdehyde reductase RutE (EC 1.1.1.298) compare
GFF2533 -0.8 -1.8 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF1113 -0.8 -1.4 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) compare
GFF3928 -0.8 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF4167 -0.8 -2.1 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF341 -0.8 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF3874 -0.8 -1.8 Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) compare
GFF2741 -0.8 -2.5 FIG002207: Probable transmembrane protein compare
GFF775 -0.8 -2.0 no description compare
GFF15 -0.8 -1.1 no description compare
GFF982 -0.8 -5.8 Cell division protein ZapE compare
GFF5523 -0.8 -0.9 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1106 -0.8 -1.6 UvrD/REP helicase compare
GFF1908 -0.8 -1.4 Short-chain dehydrogenases of various substrate specificities compare
GFF1264 -0.8 -1.8 Transcriptional regulator, Xre family compare
GFF7378 -0.8 -1.3 protein of unknown function DUF1311 compare
GFF3540 -0.8 -2.0 hypothetical protein compare
GFF3969 -0.7 -1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
GFF6328 -0.7 -0.8 LPS-assembly lipoprotein LptE compare
GFF959 -0.7 -1.5 Phage holin compare
GFF4346 -0.7 -1.2 no description compare
GFF3790 -0.7 -2.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF6798 -0.7 -2.3 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF6042 -0.7 -2.4 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1007 -0.7 -3.0 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) compare
GFF2831 -0.7 -1.8 FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated compare
GFF2073 -0.7 -2.4 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF4352 -0.7 -0.8 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF944 -0.7 -1.4 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF6177 -0.7 -3.3 Putative transmembrane protein compare
GFF4710 -0.7 -1.6 MutT/Nudix family protein compare
GFF530 -0.7 -1.8 no description compare
GFF310 -0.7 -1.5 FIG025233: SAM-dependent methyltransferases compare
GFF4237 -0.7 -2.2 no description compare
GFF1738 -0.7 -2.3 Uncharacterized proteins YbdD and YjiX compare
GFF7250 -0.7 -0.7 Putative transposase InsK for insertion sequence element IS150 compare
GFF5336 -0.7 -4.1 Phospholipid ABC transporter substrate-binding protein MlaD compare
GFF970 -0.7 -4.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3265 -0.7 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF1324 -0.7 -1.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2804 -0.7 -1.4 Membrane protein compare
GFF375 -0.7 -4.8 hypothetical protein compare
GFF7076 -0.7 -1.6 no description compare
GFF2138 -0.7 -2.3 Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1) compare
GFF163 -0.7 -1.4 no description compare
GFF6308 -0.7 -2.0 no description compare
GFF3320 -0.7 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF491 -0.6 -2.8 no description compare
GFF2758 -0.6 -1.9 Transcriptional regulator, RpiR family compare
GFF6186 -0.6 -2.8 no description compare
GFF3352 -0.6 -0.9 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF717 -0.6 -0.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF490 -0.6 -3.2 Cell division trigger factor (EC 5.2.1.8) compare
GFF4107 -0.6 -0.8 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) compare
GFF4145 -0.6 -0.9 transcriptional regulators-like protein compare
GFF7188 -0.6 -1.5 Uncharacterized methyltransferase PA1407 compare
GFF7335 -0.6 -0.8 no description compare
GFF784 -0.6 -0.7 KEGG: RNA polymerase sigma-70 factor, ECF subfamily compare
GFF5339 -0.6 -1.3 Phospholipid ABC transporter-binding protein MlaB compare
GFF4626 -0.6 -3.3 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF3048 -0.6 -1.2 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) compare
GFF1664 -0.6 -2.5 redox proteins related to the succinate dehydrogenases and fumarate reductases compare
GFF2734 -0.6 -2.9 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF358 -0.6 -1.8 hypothetical protein compare
GFF5491 -0.6 -2.5 Peptide deformylase (EC 3.5.1.88) compare
GFF406 -0.6 -1.3 hypothetical protein compare
GFF1230 -0.6 -1.4 Malic enzyme compare
GFF6862 -0.6 -2.6 Two-component system sensor histidine kinase compare
GFF5035 -0.6 -3.9 Opine oxidase subunit A compare
GFF4447 -0.6 -3.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF4023 -0.6 -1.8 no description compare
GFF6148 -0.6 -1.2 hypothetical protein compare
GFF551 -0.6 -4.6 Uncharacterized protein Tbd_1903 compare
GFF1306 -0.6 -1.2 no description compare
GFF3911 -0.6 -3.1 Putative phosphoesterase compare
GFF5780 -0.6 -2.5 Positive regulator of L-idonate catabolism compare
GFF1661 -0.6 -0.7 no description compare
GFF3649 -0.6 -4.2 C-type cytochrome biogenesis protein ResA (thioredoxin) compare
GFF2787 -0.6 -2.3 Transcriptional regulator PA1859, LysR family compare
GFF5337 -0.6 -3.6 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
GFF988 -0.6 -3.1 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) compare
GFF1356 -0.6 -1.1 Putative manganese efflux pump MntP compare
GFF2341 -0.6 -0.9 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF372 -0.6 -2.9 PMID: 11481431 compare
GFF6528 -0.6 -2.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF3767 -0.6 -0.7 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
GFF5266 -0.6 -3.9 Transaldolase (EC 2.2.1.2) compare
GFF3829 -0.6 -2.4 hypothetical protein compare
GFF1756 -0.6 -0.9 hypothetical protein compare
GFF6692 -0.6 -1.1 no description compare
GFF3734 -0.6 -1.4 RNA:NAD 2'-phosphotransferase compare
GFF7047 -0.6 -1.5 hypothetical protein compare
GFF5369 -0.6 -1.2 Large-conductance mechanosensitive channel compare
GFF3264 -0.6 -2.3 Methionine biosynthesis protein MetW compare
GFF6751 -0.6 -1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF7093 -0.6 -1.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
GFF624 -0.6 -0.8 hypothetical protein compare
GFF6293 -0.6 -1.9 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1803 -0.6 -2.4 hypothetical protein compare
GFF3369 -0.6 -1.0 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF4454 -0.5 -2.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF528 -0.5 -1.7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
GFF2125 -0.5 -1.2 hypothetical protein compare
GFF4433 -0.5 -3.4 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
GFF478 -0.5 -1.8 Rrf2-linked NADH-flavin reductase compare
GFF3854 -0.5 -1.3 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF5324 -0.5 -1.2 Shikimate kinase I (EC 2.7.1.71) compare
GFF7362 -0.5 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF6174 -0.5 -0.9 Fluoride ion transporter CrcB compare
GFF1404 -0.5 -1.3 hypothetical protein compare
GFF6175 -0.5 -1.1 hypothetical protein compare
GFF4633 -0.5 -2.8 no description compare
GFF1865 -0.5 -1.0 Transcriptional regulator, AraC family compare
GFF3875 -0.5 -2.4 beta-N-acetylglucosaminidase (EC 3.2.1.52) compare
GFF7391 -0.5 -2.0 hypothetical protein compare
GFF2320 -0.5 -1.9 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms