Experiment set2S341 for Variovorax sp. SCN45

Compare to:

phage_bap4

200 most important genes:

  gene name fitness t score description  
GFF1756 -2.5 -2.3 hypothetical protein compare
GFF239 -2.4 -2.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
GFF255 -2.3 -2.2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) compare
GFF4748 -2.3 -2.3 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF2949 -2.3 -2.6 no description compare
GFF5841 -2.1 -1.8 Auxin efflux carrier family protein compare
GFF2835 -2.0 -3.7 putative TonB-dependent receptor compare
GFF339 -1.9 -3.5 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF5307 -1.9 -3.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF5065 -1.8 -1.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF2730 -1.7 -3.1 DNA topoisomerase IV subunit A (EC 5.99.1.3) compare
GFF2505 -1.6 -5.6 hypothetical protein compare
GFF6512 -1.6 -2.0 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF7295 -1.6 -3.8 HPr kinase/phosphorylase compare
GFF1105 -1.6 -2.8 Helicase compare
GFF602 -1.6 -2.1 Transcriptional regulator, LysR family => TcuR compare
GFF6700 -1.6 -3.1 Single-stranded-DNA-specific exonuclease RecJ compare
GFF408 -1.6 -1.8 Two-component system response regulator OmpR compare
GFF2836 -1.5 -4.3 MotA/TolQ/ExbB proton channel family protein compare
GFF3890 -1.5 -2.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3957 -1.5 -2.6 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF5339 -1.5 -2.6 Phospholipid ABC transporter-binding protein MlaB compare
GFF5523 -1.5 -1.4 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF2173 -1.5 -1.5 no description compare
GFF4606 -1.5 -1.4 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF1106 -1.4 -2.6 UvrD/REP helicase compare
GFF506 -1.4 -2.4 hypothetical protein compare
GFF4839 -1.4 -2.2 Transcriptional regulator PA2737, MerR family compare
GFF409 -1.3 -4.5 Osmolarity sensory histidine kinase EnvZ compare
GFF5324 -1.3 -2.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF5030 -1.3 -1.2 no description compare
GFF2506 -1.3 -8.9 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) compare
GFF1119 -1.3 -4.0 Ribonuclease HI (EC 3.1.26.4) compare
GFF4352 -1.3 -1.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF240 -1.3 -7.2 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF3888 -1.3 -4.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3250 -1.2 -3.1 Barstar, ribonuclease (Barnase) inhibitor compare
GFF2262 -1.2 -1.7 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
GFF233 -1.2 -4.2 Putative activity regulator of membrane protease YbbK compare
GFF2142 -1.2 -1.2 Glutathione S-transferase (EC 2.5.1.18) compare
GFF7255 -1.2 -1.8 BUG/TctC family periplasmic protein compare
GFF487 -1.1 -6.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2562 -1.1 -1.2 UPF0391 membrane protein RGE_28580 compare
GFF2354 -1.1 -6.3 FIG00555615: hypothetical protein compare
GFF1625 -1.1 -1.8 Transcriptional regulator, LysR family compare
GFF6360 -1.1 -1.3 FIG00432660: hypothetical protein compare
GFF5104 -1.1 -2.3 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
GFF5720 -1.1 -2.5 Flagellar basal-body rod protein FlgG compare
GFF6787 -1.1 -1.4 Copper tolerance protein compare
GFF6499 -1.1 -2.0 hypothetical protein compare
GFF7204 -1.0 -2.7 no description compare
GFF2240 -1.0 -1.6 hypothetical protein compare
GFF7378 -1.0 -0.5 protein of unknown function DUF1311 compare
GFF6374 -1.0 -1.4 predicted 2-keto-3-deoxyxylonate dehydratase compare
GFF6036 -1.0 -4.6 DNA translocase FtsK compare
GFF4145 -1.0 -1.3 transcriptional regulators-like protein compare
GFF6328 -1.0 -1.1 LPS-assembly lipoprotein LptE compare
GFF5941 -1.0 -1.2 hypothetical protein compare
GFF2974 -1.0 -2.1 Cell division inhibitor compare
GFF2100 -1.0 -2.3 no description compare
GFF5512 -1.0 -2.0 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3928 -1.0 -1.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
GFF3854 -1.0 -1.6 FIG01269488: protein, clustered with ribosomal protein L32p compare
GFF5877 -1.0 -3.0 Probable proline rich signal peptide protein compare
GFF7206 -1.0 -1.2 no description compare
GFF7000 -0.9 -2.6 Flagellar L-ring protein FlgH compare
GFF6324 -0.9 -7.4 Kup system potassium uptake protein compare
GFF6094 -0.9 -2.1 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) compare
GFF4469 -0.9 -1.7 Cell division protein FtsA compare
GFF6293 -0.9 -2.8 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF6795 -0.9 -2.6 similar to puromycin N-acetyltransferase compare
GFF2152 -0.9 -4.3 twitching motility protein PilH compare
GFF219 -0.9 -2.7 GTP-binding protein TypA/BipA compare
GFF6532 -0.9 -4.4 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) compare
GFF2104 -0.9 -1.8 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) compare
GFF5049 -0.9 -1.1 NAD-dependent protein deacetylase of SIR2 family compare
GFF3267 -0.9 -2.7 RNA-binding protein compare
GFF6206 -0.9 -2.0 Transcriptional regulator, GntR family compare
GFF313 -0.9 -1.7 FIG027190: Putative transmembrane protein compare
GFF967 -0.9 -6.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2170 -0.9 -2.1 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF1742 -0.9 -1.0 hypothetical protein compare
GFF7362 -0.9 -2.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF489 -0.9 -2.8 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) compare
GFF643 -0.9 -1.4 no description compare
GFF2380 -0.8 -2.0 Protein phosphatase 2C-like compare
GFF531 -0.8 -6.6 hypothetical protein compare
GFF3130 -0.8 -1.9 hypothetical protein compare
GFF3905 -0.8 -2.1 Aconitate hydratase 2 (EC 4.2.1.3) compare
GFF3227 -0.8 -2.0 no description compare
GFF2109 -0.8 -1.6 FIG00454067: hypothetical protein compare
GFF788 -0.8 -1.8 hypothetical protein compare
GFF2740 -0.8 -5.0 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
GFF341 -0.8 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF3255 -0.8 -3.8 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) compare
GFF437 -0.8 -2.4 Antiholin-like protein LrgA compare
GFF2281 -0.8 -1.0 Short-chain dehydrogenase/reductase SDR compare
GFF3085 -0.8 -1.5 no description compare
GFF6246 -0.8 -3.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF5325 -0.8 -1.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF6177 -0.8 -3.4 Putative transmembrane protein compare
GFF5876 -0.8 -4.1 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF6294 -0.8 -2.4 Cell division protein compare
GFF3879 -0.8 -2.6 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
GFF6165 -0.8 -3.1 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF2326 -0.8 -1.7 Transcriptional regulator, LysR family compare
GFF6397 -0.8 -1.3 LysR family transcriptional regulator PA2758 compare
GFF530 -0.8 -1.7 no description compare
GFF3941 -0.8 -1.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF1422 -0.8 -1.7 L-lactate dehydrogenase compare
GFF3956 -0.8 -1.4 no description compare
GFF5831 -0.8 -2.1 Ketosteroid isomerase-related protein compare
GFF6439 -0.8 -1.8 Transcriptional regulator, LysR family compare
GFF1765 -0.7 -2.0 putative membrane protein compare
GFF4571 -0.7 -2.4 Acyl-CoA dehydrogenase family protein compare
GFF2645 -0.7 -2.1 Acyl dehydratase compare
GFF4557 -0.7 -2.6 Dihydroorotase (EC 3.5.2.3) compare
GFF89 -0.7 -1.4 hypothetical protein compare
GFF5094 -0.7 -2.2 BUG/TctC family periplasmic protein compare
GFF3581 -0.7 -1.6 Transcriptional regulator, ArsR family compare
GFF3834 -0.7 -1.9 hypothetical protein compare
GFF2838 -0.7 -1.1 hypothetical protein compare
GFF6083 -0.7 -1.6 hypothetical protein PA3071 compare
GFF3806 -0.7 -1.3 Putative ring-cleaving dioxygenase compare
GFF232 -0.7 -3.4 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) compare
GFF2291 -0.7 -2.9 Nodulation protein N-related dehydratase compare
GFF1182 -0.7 -3.3 FIG00347825: hypothetical protein compare
GFF3426 -0.7 -1.9 Predicted kinase compare
GFF6618 -0.7 -1.2 Mlr6156 protein compare
GFF970 -0.7 -4.6 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF7251 -0.7 -1.5 Mobile element protein compare
GFF6465 -0.7 -1.3 hypothetical protein compare
GFF490 -0.7 -4.5 Cell division trigger factor (EC 5.2.1.8) compare
GFF7322 -0.7 -3.1 hypothetical protein compare
GFF4000 -0.7 -3.0 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF7027 -0.7 -2.1 no description compare
GFF2804 -0.7 -1.4 Membrane protein compare
GFF2701 -0.7 -1.7 CaiB/BaiF family protein compare
GFF1228 -0.7 -1.0 Fructose-bisphosphate aldolase class I (EC 4.1.2.13) compare
GFF378 -0.7 -1.4 RNA (nucleoside 2'-O)-methyltransferase compare
GFF3394 -0.7 -0.9 Benzoate ABC transporter, ATP-binding protein 1 compare
GFF3277 -0.7 -3.2 Membrane protein insertion efficiency factor YidD compare
GFF3790 -0.7 -2.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF3206 -0.7 -1.2 no description compare
GFF3398 -0.7 -3.0 benzoate degradation ring-cleavage hydrolase compare
GFF6989 -0.7 -0.9 Flagellar basal-body rod modification protein FlgD compare
GFF87 -0.7 -2.3 no description compare
GFF6990 -0.7 -0.9 hypothetical protein compare
GFF6443 -0.7 -1.9 no description compare
GFF5666 -0.7 -1.9 Prevent host death protein, Phd antitoxin compare
GFF3729 -0.7 -2.3 Transcriptional regulator, AraC family compare
GFF1349 -0.6 -1.8 Thioesterase compare
GFF4824 -0.6 -2.1 Transcriptional regulator, AraC family compare
GFF5952 -0.6 -1.2 no description compare
GFF4801 -0.6 -3.0 DedA protein compare
GFF3889 -0.6 -1.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3947 -0.6 -3.1 Putative transmembrane protein compare
GFF122 -0.6 -1.3 Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1) compare
GFF6686 -0.6 -3.7 Peroxide stress regulator; Ferric uptake regulation protein; Fe2+/Zn2+ uptake regulation proteins compare
GFF474 -0.6 -4.1 FIG00537682: hypothetical protein compare
GFF542 -0.6 -2.8 no description compare
GFF2528 -0.6 -1.7 ABC transporter, ATP-binding protein PA3838 compare
GFF590 -0.6 -2.0 Transcriptional regulator, LysR family compare
GFF6491 -0.6 -2.6 SAM-dependent methyltransferase compare
GFF2481 -0.6 -0.9 Urease accessory protein UreF compare
GFF5334 -0.6 -2.7 Phospholipid ABC transporter ATP-binding protein MlaF compare
GFF5337 -0.6 -4.2 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
GFF4490 -0.6 -2.9 Site-specific tyrosine recombinase XerC compare
GFF4273 -0.6 -1.5 BUG/TctC family periplasmic protein compare
GFF5333 -0.6 -1.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF6546 -0.6 -2.4 hypothetical protein compare
GFF2741 -0.6 -2.4 FIG002207: Probable transmembrane protein compare
GFF3090 -0.6 -1.6 Colicin V production protein compare
GFF163 -0.6 -1.5 no description compare
GFF6610 -0.6 -1.9 putative lipoprotein compare
GFF1265 -0.6 -1.5 cAMP-binding protein compare
GFF6772 -0.6 -2.2 L-arabonate dehydratase (EC 4.2.1.25) compare
GFF2734 -0.6 -2.8 DNA topoisomerase IV subunit B (EC 5.99.1.3) compare
GFF2907 -0.6 -2.1 Glucarate dehydratase (EC 4.2.1.40) compare
GFF2388 -0.6 -1.8 hypothetical protein compare
GFF997 -0.6 -2.1 UPF0070 protein YfgM compare
GFF6976 -0.6 -2.8 Nodulin-related protein CC_0717 compare
GFF1262 -0.6 -0.9 Rhodanese-related sulfurtransferase compare
GFF6162 -0.6 -2.8 Dihydrodipicolinate synthase family protein RB7999 compare
GFF2570 -0.6 -1.3 Rhodanese-related sulfurtransferase YibN compare
GFF6042 -0.6 -1.9 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1738 -0.6 -2.2 Uncharacterized proteins YbdD and YjiX compare
GFF2831 -0.6 -1.3 FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated compare
GFF7053 -0.6 -0.9 Transcriptional regulator, LysR family compare
GFF5057 -0.6 -5.1 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) compare
GFF6359 -0.6 -2.7 FIG01219766: hypothetical protein compare
GFF6207 -0.6 -0.9 Allantoin racemase (EC 5.1.99.3) compare
GFF7063 -0.5 -0.7 Antibiotic biosynthesis monooxygenase compare
GFF2270 -0.5 -2.0 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
GFF6105 -0.5 -1.5 Aspartate racemase (EC 5.1.1.13) compare
GFF3914 -0.5 -3.3 Ferrous iron transport peroxidase EfeB compare
GFF3089 -0.5 -1.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3925 -0.5 -1.6 hypothetical protein compare
GFF3912 -0.5 -1.5 Ferrous iron transport permease EfeU compare
GFF3231 -0.5 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in phage experiments

For phage phage_bap4 across organisms