Experiment set2S34 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Xanthine 0.6574 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS01590 -2.2 -2.5 site-specific DNA-methyltransferase compare
A4249_RS16455 -2.1 -2.8 helix-turn-helix transcriptional regulator compare
A4249_RS02325 -1.8 -2.1 23S ribosomal RNA compare
A4249_RS06665 -1.6 -2.4 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS12210 -1.4 -2.7 tyrosine recombinase XerC compare
A4249_RS07995 -1.4 -2.1 type II 3-dehydroquinate dehydratase compare
A4249_RS12260 -1.3 -2.4 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS10360 -1.3 -2.0 HAMP domain-containing sensor histidine kinase compare
A4249_RS04080 -1.3 -4.1 M48 family metalloprotease compare
A4249_RS12085 -1.3 -2.3 DUF883 family protein compare
A4249_RS13805 -1.2 -1.0 HAD family hydrolase compare
A4249_RS13020 -1.2 -6.2 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS13060 -1.2 -9.1 AGE family epimerase/isomerase compare
A4249_RS08855 -1.2 -2.7 L,D-transpeptidase family protein compare
A4249_RS13070 -1.2 -8.1 phosphomannomutase/phosphoglucomutase compare
A4249_RS06230 -1.2 -1.8 OmpH family outer membrane protein compare
A4249_RS11150 -1.1 -5.7 capsular biosynthesis protein compare
A4249_RS07320 -1.1 -1.9 hypothetical protein compare
A4249_RS04085 -1.1 -2.7 ribonuclease E/G compare
A4249_RS12305 -1.1 -3.4 glycosyltransferase family 1 protein compare
A4249_RS13045 -1.0 -7.8 glycosyltransferase family 1 protein compare
A4249_RS03190 -1.0 -1.9 ATPase, T2SS/T4P/T4SS family compare
A4249_RS13030 -1.0 -6.0 glycosyltransferase family 1 protein compare
A4249_RS05620 -1.0 -4.2 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13025 -1.0 -7.2 hypothetical protein compare
A4249_RS08535 -1.0 -1.1 flagellar assembly protein FliX compare
A4249_RS09350 -0.9 -2.3 PGPGW domain-containing protein compare
A4249_RS04490 -0.9 -2.1 cobaltochelatase subunit CobS compare
A4249_RS11125 -0.9 -6.4 glycosyltransferase family 9 protein compare
A4249_RS04635 -0.9 -7.5 cyclic nucleotide-binding domain-containing protein compare
A4249_RS12980 -0.9 -7.9 GDP-mannose 4,6-dehydratase compare
A4249_RS14905 -0.9 -1.9 phosphonate ABC transporter ATP-binding protein compare
A4249_RS13035 -0.9 -4.2 hypothetical protein compare
A4249_RS01010 -0.9 -4.9 capsular polysaccharide biosynthesis protein compare
A4249_RS06525 -0.8 -1.1 SCP2 sterol-binding domain-containing protein compare
A4249_RS05590 -0.8 -2.7 amino acid ABC transporter substrate-binding protein compare
A4249_RS07910 -0.8 -0.8 2-hydroxyacid dehydrogenase compare
A4249_RS00895 -0.8 -1.6 DUF1476 domain-containing protein compare
A4249_RS12315 -0.8 -2.1 hypothetical protein compare
A4249_RS04215 -0.8 -2.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS08805 -0.8 -4.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS10430 -0.8 -3.8 S1/P1 Nuclease compare
A4249_RS16585 -0.8 -1.5 hypothetical protein compare
A4249_RS05625 -0.8 -6.2 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS15595 -0.8 -1.9 hypothetical protein compare
A4249_RS10115 -0.8 -1.9 phage tail tape measure protein compare
A4249_RS01085 -0.7 -1.7 DUF2282 domain-containing protein compare
A4249_RS10990 -0.7 -1.2 ATP-dependent protease ATPase subunit HslU compare
A4249_RS11290 -0.7 -1.8 double-strand break repair helicase AddA compare
A4249_RS02975 -0.7 -2.5 oligosaccharide flippase family protein compare
A4249_RS08705 -0.7 -3.7 response regulator compare
A4249_RS17005 -0.7 -2.0 glucokinase compare
A4249_RS04125 -0.7 -1.4 mechanosensitive ion channel family protein compare
A4249_RS15050 -0.7 -3.0 lysozyme inhibitor LprI family protein compare
A4249_RS04620 -0.7 -1.7 hypothetical protein compare
A4249_RS12205 -0.7 -0.9 DUF484 family protein compare
A4249_RS10460 -0.7 -5.7 ATP-binding protein compare
A4249_RS03115 -0.7 -1.3 signal peptidase II compare
A4249_RS02255 -0.6 -1.4 DUF2093 domain-containing protein compare
A4249_RS13190 -0.6 -1.9 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS10735 -0.6 -2.0 phosphogluconate dehydratase compare
A4249_RS08285 -0.6 -1.4 preQ(1) synthase compare
A4249_RS11285 -0.6 -1.8 double-strand break repair protein AddB compare
A4249_RS12825 -0.6 -1.2 SDR family oxidoreductase compare
A4249_RS04475 -0.6 -1.2 response regulator transcription factor compare
A4249_RS13640 -0.6 -1.4 molecular chaperone DnaJ compare
A4249_RS01480 -0.6 -1.6 cell division protein MraZ compare
A4249_RS14155 -0.6 -2.2 thioredoxin compare
A4249_RS01075 -0.6 -2.2 DNA-binding domain-containing protein compare
A4249_RS08270 -0.6 -1.3 DedA family protein compare
A4249_RS16570 -0.6 -1.8 hypothetical protein compare
A4249_RS13400 -0.6 -1.3 DUF2939 domain-containing protein compare
A4249_RS13535 -0.6 -1.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS00990 -0.5 -2.8 hypothetical protein compare
A4249_RS05035 -0.5 -1.1 Mrp/NBP35 family ATP-binding protein compare
A4249_RS09275 -0.5 -2.4 DUF3035 domain-containing protein compare
A4249_RS00290 -0.5 -0.7 histidine phosphatase family protein compare
A4249_RS13760 -0.5 -1.1 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS16520 -0.5 -1.8 hypothetical protein compare
A4249_RS03645 -0.5 -2.4 TonB-dependent receptor compare
A4249_RS09075 -0.5 -1.1 hypothetical protein compare
A4249_RS16265 -0.5 -1.3 helix-turn-helix domain-containing protein compare
A4249_RS00950 -0.5 -2.3 tetratricopeptide repeat protein compare
A4249_RS11435 -0.5 -4.7 YdcF family protein compare
A4249_RS09940 -0.5 -2.2 sugar MFS transporter compare
A4249_RS09210 -0.5 -0.8 hypothetical protein compare
A4249_RS08730 -0.5 -3.4 hypothetical protein compare
A4249_RS06465 -0.5 -1.4 hypothetical protein compare
A4249_RS04190 -0.5 -2.2 MliC family protein compare
A4249_RS06690 -0.5 -1.3 DUF423 domain-containing protein compare
A4249_RS08510 -0.5 -1.5 hypothetical protein compare
A4249_RS08720 -0.5 -1.6 PaaI family thioesterase compare
A4249_RS15285 -0.5 -1.9 hypothetical protein compare
A4249_RS13395 -0.5 -2.3 DUF2939 domain-containing protein compare
A4249_RS03455 -0.4 -1.8 cysteine hydrolase compare
A4249_RS13750 -0.4 -1.0 hypothetical protein compare
A4249_RS09725 -0.4 -1.3 hypothetical protein compare
A4249_RS16085 -0.4 -0.9 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS14165 -0.4 -0.8 prolyl-tRNA synthetase associated domain-containing protein compare
A4249_RS00145 -0.4 -0.7 SURF1 family protein compare
A4249_RS11755 -0.4 -2.1 efflux RND transporter periplasmic adaptor subunit compare
A4249_RS07290 -0.4 -1.1 ribonuclease E/G compare
A4249_RS07505 -0.4 -1.5 hypothetical protein compare
A4249_RS09880 -0.4 -3.9 TonB-dependent receptor compare
A4249_RS10840 -0.4 -1.7 hypothetical protein compare
A4249_RS13330 -0.4 -2.0 hypothetical protein compare
A4249_RS07090 -0.4 -1.6 hypothetical protein compare
A4249_RS10245 -0.4 -1.6 MucR family transcriptional regulator compare
A4249_RS04450 -0.4 -1.1 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS14565 -0.4 -1.6 DUF488 domain-containing protein compare
A4249_RS00240 -0.4 -1.0 rhodanese family protein compare
A4249_RS15180 -0.4 -2.1 hypothetical protein compare
A4249_RS16505 -0.4 -1.7 SEC-C metal-binding domain-containing protein compare
A4249_RS11825 -0.4 -0.4 DUF6521 family protein compare
A4249_RS15110 -0.4 -1.3 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS13125 -0.4 -1.0 ribonuclease PH compare
A4249_RS12225 -0.4 -0.6 SDR family oxidoreductase compare
A4249_RS00310 -0.4 -1.7 acetoacetyl-CoA reductase compare
A4249_RS07665 -0.4 -1.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS06895 -0.4 -1.4 hypothetical protein compare
A4249_RS15820 -0.4 -1.3 arsenate reductase (glutaredoxin) compare
A4249_RS00285 -0.4 -1.1 DUF952 domain-containing protein compare
A4249_RS02820 -0.4 -0.8 Ppx/GppA phosphatase family protein compare
A4249_RS07165 -0.4 -3.1 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS15055 -0.4 -1.3 SprT family zinc-dependent metalloprotease compare
A4249_RS08355 -0.4 -2.5 response regulator compare
A4249_RS07205 -0.4 -2.6 hypothetical protein compare
A4249_RS09195 -0.4 -1.3 TldD/PmbA family protein compare
A4249_RS12640 -0.4 -0.6 hypothetical protein compare
A4249_RS10125 -0.4 -0.7 phage major tail protein, TP901-1 family compare
A4249_RS05370 -0.4 -1.6 DNA polymerase Y family protein compare
A4249_RS02485 -0.4 -1.5 methylmalonyl-CoA mutase family protein compare
A4249_RS16615 -0.4 -1.1 hypothetical protein compare
A4249_RS10155 -0.4 -2.3 hypothetical protein compare
A4249_RS08725 -0.4 -1.6 hypothetical protein compare
A4249_RS15660 -0.4 -1.0 hypothetical protein compare
A4249_RS12400 -0.4 -0.5 hypothetical protein compare
A4249_RS04835 -0.3 -1.6 GTPase HflX compare
A4249_RS09660 -0.3 -1.7 phosphoadenylyl-sulfate reductase compare
A4249_RS00170 -0.3 -0.6 TetR/AcrR family transcriptional regulator compare
A4249_RS04955 -0.3 -1.5 DUF3606 domain-containing protein compare
A4249_RS09640 -0.3 -1.5 hypothetical protein compare
A4249_RS13165 -0.3 -1.7 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS12510 -0.3 -2.3 phosphoenolpyruvate carboxylase compare
A4249_RS12970 -0.3 -1.1 glycosyltransferase family 61 protein compare
A4249_RS10480 -0.3 -0.7 DUF1190 domain-containing protein compare
A4249_RS12915 -0.3 -1.1 hypothetical protein compare
A4249_RS15590 -0.3 -1.7 chemotaxis protein CheD compare
A4249_RS01290 -0.3 -2.3 S49 family peptidase compare
A4249_RS10910 -0.3 -1.9 hypothetical protein compare
A4249_RS16250 -0.3 -1.1 DUF3606 domain-containing protein compare
A4249_RS01765 -0.3 -1.2 DUF3489 domain-containing protein compare
A4249_RS04400 -0.3 -1.9 type 2 isopentenyl-diphosphate Delta-isomerase compare
A4249_RS16765 -0.3 -0.9 hypothetical protein compare
A4249_RS07920 -0.3 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS07895 -0.3 -0.8 VOC family protein compare
A4249_RS16465 -0.3 -2.3 hypothetical protein compare
A4249_RS10855 -0.3 -1.7 hypothetical protein compare
A4249_RS10760 -0.3 -2.0 hypothetical protein compare
A4249_RS15980 -0.3 -1.3 multidrug efflux SMR transporter compare
A4249_RS05715 -0.3 -0.7 hypothetical protein compare
A4249_RS11995 -0.3 -2.3 type II secretion system F family protein compare
A4249_RS09550 -0.3 -1.9 AMP-binding protein compare
A4249_RS04220 -0.3 -0.9 low molecular weight phosphotyrosine protein phosphatase compare
A4249_RS03820 -0.3 -0.8 DUF1489 domain-containing protein compare
A4249_RS07170 -0.3 -1.7 hypothetical protein compare
A4249_RS13770 -0.3 -1.8 hypothetical protein compare
A4249_RS01430 -0.3 -2.1 DUF2786 domain-containing protein compare
A4249_RS09400 -0.3 -2.1 ScpA family protein compare
A4249_RS06680 -0.3 -0.7 tipN compare
A4249_RS01905 -0.3 -0.6 TrbC/VirB2 family protein compare
A4249_RS06990 -0.3 -1.5 MT-A70 family methyltransferase compare
A4249_RS05160 -0.3 -1.2 response regulator compare
A4249_RS09645 -0.3 -1.3 hypothetical protein compare
A4249_RS03845 -0.3 -0.8 TerC family protein compare
A4249_RS11985 -0.3 -1.0 hypothetical protein compare
A4249_RS11550 -0.3 -1.3 cupin domain-containing protein compare
A4249_RS17050 -0.3 -1.5 flagellar hook-length control protein FliK compare
A4249_RS07105 -0.3 -0.5 hypothetical protein compare
A4249_RS09480 -0.3 -0.9 hypothetical protein compare
A4249_RS14395 -0.3 -1.0 hypothetical protein compare
A4249_RS02940 -0.3 -2.2 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO compare
A4249_RS14780 -0.3 -2.2 NepR family anti-sigma factor compare
A4249_RS05885 -0.3 -1.0 cold-shock protein compare
A4249_RS15345 -0.3 -1.1 DUF6491 family protein compare
A4249_RS14830 -0.3 -0.7 peptidoglycan DD-metalloendopeptidase family protein compare
A4249_RS14400 -0.3 -1.5 LytTR family transcriptional regulator DNA-binding domain-containing protein compare
A4249_RS14255 -0.3 -0.4 ribonuclease P protein component compare
A4249_RS02250 -0.3 -1.8 M23 family metallopeptidase compare
A4249_RS04345 -0.3 -1.1 glycosyltransferase family A protein compare
A4249_RS10060 -0.3 -1.5 RluA family pseudouridine synthase compare
A4249_RS16440 -0.3 -1.7 hypothetical protein compare
A4249_RS03370 -0.3 -0.5 copper-binding protein compare
A4249_RS07915 -0.3 -1.4 EF-hand domain-containing protein compare
A4249_RS09055 -0.3 -1.3 hypothetical protein compare
A4249_RS03005 -0.3 -1.3 glycosyltransferase family 4 protein compare
A4249_RS13580 -0.3 -1.6 UrcA family protein compare
A4249_RS16365 -0.3 -1.3 DUF393 domain-containing protein compare
A4249_RS16325 -0.3 -1.2 helix-turn-helix transcriptional regulator compare
A4249_RS15845 -0.3 -1.6 hemerythrin domain-containing protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Xanthine across organisms