Experiment set2S3 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Adenine 0.74 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS12970 -2.1 -6.7 glycosyltransferase family 61 protein compare
A4249_RS02905 -1.8 -2.7 tRNA guanosine(34) transglycosylase Tgt compare
A4249_RS15865 -1.8 -2.5 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS13200 -1.8 -3.6 thiamine pyrophosphate-dependent enzyme compare
A4249_RS04080 -1.7 -5.4 M48 family metalloprotease compare
A4249_RS08855 -1.7 -3.7 L,D-transpeptidase family protein compare
A4249_RS06665 -1.6 -2.4 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS13045 -1.5 -11.0 glycosyltransferase family 1 protein compare
A4249_RS12980 -1.5 -12.9 GDP-mannose 4,6-dehydratase compare
A4249_RS13035 -1.5 -6.4 hypothetical protein compare
A4249_RS13060 -1.4 -11.1 AGE family epimerase/isomerase compare
A4249_RS13030 -1.4 -9.4 glycosyltransferase family 1 protein compare
A4249_RS13025 -1.4 -10.8 hypothetical protein compare
A4249_RS02645 -1.4 -2.1 cobalamin biosynthesis protein CbiG compare
A4249_RS10430 -1.4 -6.7 S1/P1 Nuclease compare
A4249_RS05620 -1.4 -6.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS01590 -1.4 -2.2 site-specific DNA-methyltransferase compare
A4249_RS08535 -1.4 -1.6 flagellar assembly protein FliX compare
A4249_RS11125 -1.3 -9.2 glycosyltransferase family 9 protein compare
A4249_RS13070 -1.3 -8.8 phosphomannomutase/phosphoglucomutase compare
A4249_RS12305 -1.2 -4.3 glycosyltransferase family 1 protein compare
A4249_RS01010 -1.2 -7.0 capsular polysaccharide biosynthesis protein compare
A4249_RS06230 -1.2 -1.8 OmpH family outer membrane protein compare
A4249_RS11150 -1.2 -6.3 capsular biosynthesis protein compare
A4249_RS08285 -1.1 -2.4 preQ(1) synthase compare
A4249_RS12210 -1.1 -2.0 tyrosine recombinase XerC compare
A4249_RS13020 -1.0 -5.9 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS10360 -1.0 -1.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS16585 -1.0 -1.7 hypothetical protein compare
A4249_RS00360 -1.0 -2.7 type II toxin-antitoxin system prevent-host-death family antitoxin compare
A4249_RS04635 -1.0 -8.5 cyclic nucleotide-binding domain-containing protein compare
A4249_RS00105 -1.0 -7.7 cytochrome c oxidase subunit II compare
A4249_RS00215 -1.0 -3.5 bifunctional diguanylate cyclase/phosphodiesterase compare
A4249_RS10390 -1.0 -2.1 translation elongation factor 4 compare
A4249_RS04215 -1.0 -2.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS15345 -0.9 -3.7 DUF6491 family protein compare
A4249_RS13805 -0.9 -0.7 HAD family hydrolase compare
A4249_RS05625 -0.9 -7.3 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS02765 -0.8 -1.7 hypothetical protein compare
A4249_RS07195 -0.8 -2.1 hypothetical protein compare
A4249_RS00110 -0.8 -6.8 cytochrome c oxidase subunit I compare
A4249_RS08805 -0.8 -5.1 HAMP domain-containing sensor histidine kinase compare
A4249_RS04020 -0.8 -2.5 energy transducer TonB compare
A4249_RS07610 -0.8 -1.4 methyltransferase type 11 compare
A4249_RS02325 -0.8 -1.3 23S ribosomal RNA compare
A4249_RS07995 -0.7 -1.6 type II 3-dehydroquinate dehydratase compare
A4249_RS06370 -0.7 -1.6 hypothetical protein compare
A4249_RS08730 -0.7 -5.6 hypothetical protein compare
A4249_RS08705 -0.7 -3.5 response regulator compare
A4249_RS10965 -0.7 -1.1 response regulator compare
A4249_RS11560 -0.7 -1.2 peroxiredoxin compare
A4249_RS16840 -0.7 -4.4 hypothetical protein compare
A4249_RS08745 -0.7 -2.7 hypothetical protein compare
A4249_RS15875 -0.7 -1.6 hypothetical protein compare
A4249_RS11285 -0.6 -1.6 double-strand break repair protein AddB compare
A4249_RS12260 -0.6 -1.5 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS04450 -0.6 -1.8 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS13175 -0.6 -1.2 Rrf2 family transcriptional regulator compare
A4249_RS00855 -0.6 -2.2 hypothetical protein compare
A4249_RS01615 -0.6 -2.1 GNAT family N-acetyltransferase compare
A4249_RS12570 -0.6 -2.6 hypothetical protein compare
A4249_RS14835 -0.6 -3.0 S41 family peptidase compare
A4249_RS16085 -0.6 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS03440 -0.6 -2.2 hypothetical protein compare
A4249_RS00240 -0.6 -1.9 rhodanese family protein compare
A4249_RS03225 -0.6 -2.4 hypothetical protein compare
A4249_RS04125 -0.6 -1.6 mechanosensitive ion channel family protein compare
A4249_RS15890 -0.6 -3.9 hypothetical protein compare
A4249_RS12825 -0.6 -1.4 SDR family oxidoreductase compare
A4249_RS10105 -0.5 -0.9 DUF2460 domain-containing protein compare
A4249_RS08640 -0.5 -1.7 DUF1153 domain-containing protein compare
A4249_RS07120 -0.5 -1.8 hypothetical protein compare
A4249_RS01460 -0.5 -1.0 signal peptide peptidase SppA compare
A4249_RS12400 -0.5 -0.8 hypothetical protein compare
A4249_RS05715 -0.5 -1.3 hypothetical protein compare
A4249_RS07115 -0.5 -2.3 hypothetical protein compare
A4249_RS14780 -0.5 -1.9 NepR family anti-sigma factor compare
A4249_RS00505 -0.5 -2.0 GNAT family N-acetyltransferase compare
A4249_RS03645 -0.5 -2.6 TonB-dependent receptor compare
A4249_RS16845 -0.5 -1.7 hypothetical protein compare
A4249_RS01610 -0.5 -0.7 TetR/AcrR family transcriptional regulator compare
A4249_RS13640 -0.5 -0.9 molecular chaperone DnaJ compare
A4249_RS01275 -0.5 -2.9 hypothetical protein compare
A4249_RS00895 -0.5 -1.1 DUF1476 domain-containing protein compare
A4249_RS08775 -0.5 -0.9 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS12225 -0.5 -1.0 SDR family oxidoreductase compare
A4249_RS13535 -0.5 -2.2 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS01905 -0.5 -0.6 TrbC/VirB2 family protein compare
A4249_RS12860 -0.5 -1.1 DUF350 domain-containing protein compare
A4249_RS12390 -0.5 -1.4 ATP-dependent protease subunit HslV compare
A4249_RS10550 -0.5 -1.0 winged helix-turn-helix transcriptional regulator compare
A4249_RS14155 -0.5 -2.2 thioredoxin compare
A4249_RS14205 -0.4 -0.9 response regulator compare
A4249_RS09285 -0.4 -1.7 Tat pathway signal sequence domain protein compare
A4249_RS15885 -0.4 -3.6 tol-pal system-associated acyl-CoA thioesterase compare
A4249_RS09275 -0.4 -2.0 DUF3035 domain-containing protein compare
A4249_RS03265 -0.4 -1.8 metal-sensitive transcriptional regulator compare
A4249_RS10935 -0.4 -2.0 hypothetical protein compare
A4249_RS16455 -0.4 -0.9 helix-turn-helix transcriptional regulator compare
A4249_RS16155 -0.4 -1.2 tRNA-Glu compare
A4249_RS09405 -0.4 -1.0 beta-N-acetylhexosaminidase compare
A4249_RS13970 -0.4 -2.1 amidohydrolase family protein compare
A4249_RS14840 -0.4 -1.9 carboxynorspermidine decarboxylase compare
A4249_RS15310 -0.4 -3.2 lipocalin family protein compare
A4249_RS09880 -0.4 -3.9 TonB-dependent receptor compare
A4249_RS10460 -0.4 -3.6 ATP-binding protein compare
A4249_RS02735 -0.4 -2.0 flagellin compare
A4249_RS12455 -0.4 -1.2 hypothetical protein compare
A4249_RS11805 -0.4 -0.8 SOS response-associated peptidase compare
A4249_RS08510 -0.4 -1.2 hypothetical protein compare
A4249_RS14950 -0.4 -1.1 ParD-like family protein compare
A4249_RS07165 -0.4 -3.5 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS11645 -0.4 -2.6 helix-turn-helix domain-containing protein compare
A4249_RS15315 -0.4 -3.3 sorbosone dehydrogenase family protein compare
A4249_RS16425 -0.4 -0.9 hypothetical protein compare
A4249_RS02620 -0.4 -2.1 DNA repair protein RecN compare
A4249_RS08500 -0.4 -1.3 K+/H+ antiporter subunit F compare
A4249_RS00120 -0.4 -2.2 cytochrome c oxidase assembly protein compare
A4249_RS10785 -0.4 -0.9 hypothetical protein compare
A4249_RS11985 -0.4 -1.7 hypothetical protein compare
A4249_RS12315 -0.4 -1.1 hypothetical protein compare
A4249_RS00125 -0.4 -2.6 NUDIX domain-containing protein compare
A4249_RS16280 -0.4 -1.4 general stress protein compare
A4249_RS13560 -0.4 -0.9 glutaredoxin 3 compare
A4249_RS13310 -0.4 -2.1 transglutaminase family protein compare
A4249_RS07205 -0.4 -2.6 hypothetical protein compare
A4249_RS01115 -0.4 -1.4 LysR substrate-binding domain-containing protein compare
A4249_RS04475 -0.4 -0.9 response regulator transcription factor compare
A4249_RS15180 -0.4 -2.0 hypothetical protein compare
A4249_RS01285 -0.4 -1.2 head decoration protein compare
A4249_RS00415 -0.4 -2.3 NAD-dependent deacylase compare
A4249_RS09605 -0.4 -0.6 DUF6468 domain-containing protein compare
A4249_RS09035 -0.4 -0.7 redox-regulated ATPase YchF compare
A4249_RS02935 -0.4 -2.8 MFS transporter compare
A4249_RS16940 -0.4 -1.6 GIY-YIG nuclease family protein compare
A4249_RS17040 -0.4 -1.5 hypothetical protein compare
A4249_RS02565 -0.4 -2.7 cytochrome b N-terminal domain-containing protein compare
A4249_RS07185 -0.3 -1.6 hypothetical protein compare
A4249_RS14010 -0.3 -2.3 DUF2141 domain-containing protein compare
A4249_RS04210 -0.3 -1.2 TMEM175 family protein compare
A4249_RS16790 -0.3 -1.4 hypothetical protein compare
A4249_RS05370 -0.3 -1.4 DNA polymerase Y family protein compare
A4249_RS01765 -0.3 -1.5 DUF3489 domain-containing protein compare
A4249_RS07170 -0.3 -1.8 hypothetical protein compare
A4249_RS09620 -0.3 -1.1 flagellar basal-body rod protein FlgF compare
A4249_RS15150 -0.3 -0.9 hypothetical protein compare
A4249_RS09265 -0.3 -0.8 exodeoxyribonuclease VII large subunit compare
A4249_RS07155 -0.3 -2.9 hypothetical protein compare
A4249_RS15305 -0.3 -2.7 sulfate adenylyltransferase subunit CysD compare
A4249_RS09600 -0.3 -2.0 hypothetical protein compare
A4249_RS13345 -0.3 -1.3 tRNA pseudouridine(55) synthase TruB compare
A4249_RS03175 -0.3 -1.8 ParB N-terminal domain-containing protein compare
A4249_RS15485 -0.3 -1.2 biliverdin-producing heme oxygenase compare
A4249_RS04625 -0.3 -2.2 50S ribosomal protein L11 methyltransferase compare
A4249_RS16800 -0.3 -1.1 hypothetical protein compare
A4249_RS01465 -0.3 -1.3 hypothetical protein compare
A4249_RS00290 -0.3 -0.7 histidine phosphatase family protein compare
A4249_RS02870 -0.3 -1.6 translocation/assembly module TamB domain-containing protein compare
A4249_RS16570 -0.3 -1.2 hypothetical protein compare
A4249_RS01480 -0.3 -1.1 cell division protein MraZ compare
A4249_RS13545 -0.3 -0.9 Flp family type IVb pilin compare
A4249_RS09940 -0.3 -2.2 sugar MFS transporter compare
A4249_RS11180 -0.3 -1.3 YqaA family protein compare
A4249_RS07075 -0.3 -2.1 helix-turn-helix domain-containing protein compare
A4249_RS10110 -0.3 -1.0 DUF805 domain-containing protein compare
A4249_RS11435 -0.3 -3.0 YdcF family protein compare
A4249_RS03300 -0.3 -1.0 copper resistance protein CopC compare
A4249_RS13180 -0.3 -0.9 SDR family oxidoreductase compare
A4249_RS00225 -0.3 -1.2 TetR family transcriptional regulator compare
A4249_RS01085 -0.3 -0.8 DUF2282 domain-containing protein compare
A4249_RS16460 -0.3 -1.1 hypothetical protein compare
A4249_RS12505 -0.3 -2.4 divergent polysaccharide deacetylase family protein compare
A4249_RS06510 -0.3 -1.4 hypothetical protein compare
A4249_RS02560 -0.3 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
A4249_RS09160 -0.3 -1.5 MmcQ/YjbR family DNA-binding protein compare
A4249_RS16935 -0.3 -0.5 Plug domain-containing protein compare
A4249_RS12275 -0.3 -1.3 cobaltochelatase subunit CobT compare
A4249_RS11525 -0.3 -1.5 DsrE family protein compare
A4249_RS12330 -0.3 -1.5 hypothetical protein compare
A4249_RS15880 -0.3 -1.5 hypothetical protein compare
A4249_RS07320 -0.3 -0.9 hypothetical protein compare
A4249_RS08255 -0.3 -1.0 serine O-acetyltransferase compare
A4249_RS03425 -0.3 -1.5 hypothetical protein compare
A4249_RS02650 -0.3 -1.1 hypothetical protein compare
A4249_RS13010 -0.3 -1.6 FkbM family methyltransferase compare
A4249_RS15595 -0.3 -1.2 hypothetical protein compare
A4249_RS04370 -0.3 -2.1 lycopene beta-cyclase CrtY compare
A4249_RS15110 -0.3 -0.8 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS13590 -0.3 -1.7 [protein-PII] uridylyltransferase compare
A4249_RS03820 -0.3 -1.2 DUF1489 domain-containing protein compare
A4249_RS13985 -0.3 -2.2 DUF1993 domain-containing protein compare
A4249_RS15870 -0.3 -1.9 alpha/beta fold hydrolase compare
A4249_RS15930 -0.3 -1.7 DUF3667 domain-containing protein compare
A4249_RS01220 -0.3 -1.1 hypothetical protein compare
A4249_RS14470 -0.3 -1.8 PEGA domain-containing protein compare
A4249_RS03420 -0.3 -1.4 alpha-ketoglutarate-dependent dioxygenase AlkB compare
A4249_RS13395 -0.3 -1.5 DUF2939 domain-containing protein compare
A4249_RS13580 -0.3 -1.7 UrcA family protein compare
A4249_RS07130 -0.3 -2.4 packaged DNA stabilization protein compare
A4249_RS14360 -0.3 -0.7 pilus assembly protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Adenine across organisms