Experiment set2S29 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Uracil 0.8921 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS11720 -1.7 -2.2 strawberry notch C-terminal domain-containing protein compare
A4249_RS13805 -1.5 -1.9 HAD family hydrolase compare
A4249_RS01590 -1.5 -2.3 site-specific DNA-methyltransferase compare
A4249_RS06665 -1.2 -2.2 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS16085 -1.0 -1.2 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS10965 -1.0 -1.4 response regulator compare
A4249_RS16685 -1.0 -1.5 tRNA-Arg compare
A4249_RS01190 -0.9 -2.4 hypothetical protein compare
A4249_RS11125 -0.9 -7.0 glycosyltransferase family 9 protein compare
A4249_RS09405 -0.9 -2.0 beta-N-acetylhexosaminidase compare
A4249_RS05590 -0.8 -2.9 amino acid ABC transporter substrate-binding protein compare
A4249_RS15660 -0.8 -2.5 hypothetical protein compare
A4249_RS00925 -0.7 -1.9 multidrug efflux SMR transporter compare
A4249_RS01285 -0.7 -3.4 head decoration protein compare
A4249_RS13200 -0.7 -2.0 thiamine pyrophosphate-dependent enzyme compare
A4249_RS14255 -0.7 -1.1 ribonuclease P protein component compare
A4249_RS10710 -0.7 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
A4249_RS15110 -0.7 -1.9 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS14905 -0.7 -1.8 phosphonate ABC transporter ATP-binding protein compare
A4249_RS12455 -0.7 -2.3 hypothetical protein compare
A4249_RS13175 -0.7 -1.1 Rrf2 family transcriptional regulator compare
A4249_RS05620 -0.6 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS09275 -0.6 -3.2 DUF3035 domain-containing protein compare
A4249_RS07610 -0.6 -0.8 methyltransferase type 11 compare
A4249_RS10430 -0.6 -3.6 S1/P1 Nuclease compare
A4249_RS12085 -0.6 -1.7 DUF883 family protein compare
A4249_RS02735 -0.6 -3.0 flagellin compare
A4249_RS01610 -0.6 -0.9 TetR/AcrR family transcriptional regulator compare
A4249_RS14065 -0.6 -2.1 MFS transporter compare
A4249_RS08885 -0.6 -1.8 DUF465 domain-containing protein compare
A4249_RS02165 -0.6 -0.8 c-type cytochrome compare
A4249_RS04620 -0.6 -1.6 hypothetical protein compare
A4249_RS03115 -0.6 -1.2 signal peptidase II compare
A4249_RS05625 -0.6 -4.8 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS00855 -0.6 -2.1 hypothetical protein compare
A4249_RS13760 -0.6 -1.0 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS01220 -0.5 -1.6 hypothetical protein compare
A4249_RS05390 -0.5 -1.9 SOS response-associated peptidase family protein compare
A4249_RS07470 -0.5 -0.8 hypothetical protein compare
A4249_RS10160 -0.5 -1.9 HK97 family phage prohead protease compare
A4249_RS06485 -0.5 -2.6 hypothetical protein compare
A4249_RS14840 -0.5 -2.3 carboxynorspermidine decarboxylase compare
A4249_RS03300 -0.5 -1.2 copper resistance protein CopC compare
A4249_RS06230 -0.5 -0.8 OmpH family outer membrane protein compare
A4249_RS04085 -0.5 -1.4 ribonuclease E/G compare
A4249_RS06990 -0.5 -2.6 MT-A70 family methyltransferase compare
A4249_RS01230 -0.5 -1.3 hypothetical protein compare
A4249_RS13450 -0.5 -0.9 PilZ domain-containing protein compare
A4249_RS00700 -0.5 -1.7 hypothetical protein compare
A4249_RS01275 -0.5 -1.8 hypothetical protein compare
A4249_RS06165 -0.5 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
A4249_RS02975 -0.5 -2.0 oligosaccharide flippase family protein compare
A4249_RS05900 -0.4 -1.1 hypothetical protein compare
A4249_RS16585 -0.4 -1.0 hypothetical protein compare
A4249_RS11150 -0.4 -2.8 capsular biosynthesis protein compare
A4249_RS10735 -0.4 -1.8 phosphogluconate dehydratase compare
A4249_RS07485 -0.4 -2.9 hypothetical protein compare
A4249_RS08500 -0.4 -1.6 K+/H+ antiporter subunit F compare
A4249_RS10390 -0.4 -1.1 translation elongation factor 4 compare
A4249_RS13060 -0.4 -3.5 AGE family epimerase/isomerase compare
A4249_RS11825 -0.4 -0.8 DUF6521 family protein compare
A4249_RS00290 -0.4 -0.9 histidine phosphatase family protein compare
A4249_RS07995 -0.4 -0.8 type II 3-dehydroquinate dehydratase compare
A4249_RS10200 -0.4 -2.0 YcgN family cysteine cluster protein compare
A4249_RS12390 -0.4 -1.3 ATP-dependent protease subunit HslV compare
A4249_RS11560 -0.4 -0.7 peroxiredoxin compare
A4249_RS08855 -0.4 -1.3 L,D-transpeptidase family protein compare
A4249_RS07180 -0.4 -2.3 hypothetical protein compare
A4249_RS03370 -0.4 -0.8 copper-binding protein compare
A4249_RS06455 -0.4 -1.1 HU family DNA-binding protein compare
A4249_RS03440 -0.4 -1.5 hypothetical protein compare
A4249_RS13070 -0.4 -3.0 phosphomannomutase/phosphoglucomutase compare
A4249_RS00930 -0.4 -2.4 glutathione S-transferase family protein compare
A4249_RS09605 -0.4 -0.9 DUF6468 domain-containing protein compare
A4249_RS05845 -0.4 -1.3 sigma-70 family RNA polymerase sigma factor compare
A4249_RS08775 -0.4 -1.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS13030 -0.4 -2.8 glycosyltransferase family 1 protein compare
A4249_RS01815 -0.4 -1.6 DNA mismatch endonuclease Vsr compare
A4249_RS07960 -0.4 -2.3 DUF1499 domain-containing protein compare
A4249_RS02645 -0.4 -0.7 cobalamin biosynthesis protein CbiG compare
A4249_RS06855 -0.4 -1.7 hypothetical protein compare
A4249_RS10320 -0.4 -1.3 HAMP domain-containing sensor histidine kinase compare
A4249_RS10990 -0.4 -0.9 ATP-dependent protease ATPase subunit HslU compare
A4249_RS13035 -0.4 -1.8 hypothetical protein compare
A4249_RS09355 -0.4 -1.9 hypothetical protein compare
A4249_RS04045 -0.4 -2.2 GNAT family N-acetyltransferase compare
A4249_RS16570 -0.4 -2.0 hypothetical protein compare
A4249_RS13190 -0.4 -1.3 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS04080 -0.3 -1.5 M48 family metalloprotease compare
A4249_RS12330 -0.3 -1.7 hypothetical protein compare
A4249_RS00895 -0.3 -0.9 DUF1476 domain-containing protein compare
A4249_RS15560 -0.3 -0.9 response regulator compare
A4249_RS00395 -0.3 -1.7 DUF2975 domain-containing protein compare
A4249_RS13745 -0.3 -2.0 DUF3576 domain-containing protein compare
A4249_RS07645 -0.3 -1.4 fumarylacetoacetate hydrolase family protein compare
A4249_RS04125 -0.3 -0.7 mechanosensitive ion channel family protein compare
A4249_RS15960 -0.3 -1.1 transcriptional regulator compare
A4249_RS00880 -0.3 -2.0 YbhB/YbcL family Raf kinase inhibitor-like protein compare
A4249_RS12225 -0.3 -0.9 SDR family oxidoreductase compare
A4249_RS08685 -0.3 -0.8 hypothetical protein compare
A4249_RS07015 -0.3 -0.8 hypothetical protein compare
A4249_RS01145 -0.3 -2.0 OsmC family protein compare
A4249_RS03065 -0.3 -1.0 arsenate reductase (glutaredoxin) compare
A4249_RS03175 -0.3 -1.7 ParB N-terminal domain-containing protein compare
A4249_RS04635 -0.3 -2.8 cyclic nucleotide-binding domain-containing protein compare
A4249_RS04350 -0.3 -1.2 lipopolysaccharide biosynthesis protein compare
A4249_RS07320 -0.3 -0.6 hypothetical protein compare
A4249_RS12260 -0.3 -0.9 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS00270 -0.3 -0.8 very short patch repair endonuclease compare
A4249_RS13025 -0.3 -2.6 hypothetical protein compare
A4249_RS01555 -0.3 -1.3 response regulator compare
A4249_RS03645 -0.3 -1.8 TonB-dependent receptor compare
A4249_RS11965 -0.3 -1.5 cupin domain-containing protein compare
A4249_RS13705 -0.3 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
A4249_RS04765 -0.3 -1.5 ATP-dependent DNA helicase RecG compare
A4249_RS12365 -0.3 -1.5 D-glycerate dehydrogenase compare
A4249_RS04190 -0.3 -1.4 MliC family protein compare
A4249_RS04995 -0.3 -1.1 DUF2171 domain-containing protein compare
A4249_RS16545 -0.3 -0.9 hypothetical protein compare
A4249_RS11285 -0.3 -1.0 double-strand break repair protein AddB compare
A4249_RS12980 -0.3 -2.7 GDP-mannose 4,6-dehydratase compare
A4249_RS00430 -0.3 -1.7 glutathione S-transferase family protein compare
A4249_RS04345 -0.3 -1.4 glycosyltransferase family A protein compare
A4249_RS09735 -0.3 -1.4 NUDIX domain-containing protein compare
A4249_RS16460 -0.3 -1.0 hypothetical protein compare
A4249_RS01905 -0.3 -0.4 TrbC/VirB2 family protein compare
A4249_RS09725 -0.3 -0.9 hypothetical protein compare
A4249_RS13400 -0.3 -1.1 DUF2939 domain-containing protein compare
A4249_RS13180 -0.3 -0.9 SDR family oxidoreductase compare
A4249_RS02825 -0.3 -1.6 heat shock protein HspQ compare
A4249_RS00830 -0.3 -1.1 hypothetical protein compare
A4249_RS08355 -0.3 -2.1 response regulator compare
A4249_RS15195 -0.3 -1.0 DcaP family trimeric outer membrane transporter compare
A4249_RS10110 -0.3 -0.7 DUF805 domain-containing protein compare
A4249_RS11570 -0.3 -1.1 YeeE/YedE thiosulfate transporter family protein compare
A4249_RS08290 -0.3 -1.9 nitronate monooxygenase family protein compare
A4249_RS03820 -0.3 -1.2 DUF1489 domain-containing protein compare
A4249_RS13970 -0.3 -1.0 amidohydrolase family protein compare
A4249_RS07235 -0.3 -1.3 sugar transferase compare
A4249_RS12215 -0.3 -1.1 hypothetical protein compare
A4249_RS05400 -0.3 -1.5 hypothetical protein compare
A4249_RS13010 -0.3 -1.5 FkbM family methyltransferase compare
A4249_RS14695 -0.3 -1.1 transcription elongation factor GreA compare
A4249_RS14555 -0.3 -1.5 multidrug effflux MFS transporter compare
A4249_RS07595 -0.3 -1.5 hypothetical protein compare
A4249_RS15140 -0.3 -1.1 TraB/GumN family protein compare
A4249_RS03590 -0.3 -2.3 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS04960 -0.3 -1.1 UvrD-helicase domain-containing protein compare
A4249_RS09250 -0.3 -1.0 murein L,D-transpeptidase catalytic domain family protein compare
A4249_RS04465 -0.3 -1.7 SURF1 family protein compare
A4249_RS15410 -0.3 -1.2 hypothetical protein compare
A4249_RS14950 -0.3 -0.6 ParD-like family protein compare
A4249_RS09830 -0.3 -1.4 ATP-binding protein compare
A4249_RS04845 -0.3 -1.5 HAD-IA family hydrolase compare
A4249_RS02565 -0.2 -2.1 cytochrome b N-terminal domain-containing protein compare
A4249_RS16470 -0.2 -1.6 hypothetical protein compare
A4249_RS09415 -0.2 -1.5 deoxyguanosinetriphosphate triphosphohydrolase compare
A4249_RS10760 -0.2 -1.5 hypothetical protein compare
A4249_RS00425 -0.2 -1.3 VOC family protein compare
A4249_RS14025 -0.2 -0.5 CHAP domain-containing protein compare
A4249_RS13195 -0.2 -1.1 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS09285 -0.2 -1.3 Tat pathway signal sequence domain protein compare
A4249_RS14215 -0.2 -0.7 ester cyclase compare
A4249_RS04200 -0.2 -1.2 pseudouridine synthase compare
A4249_RS06155 -0.2 -1.2 anthranilate synthase component I compare
A4249_RS12615 -0.2 -1.1 recombinase RecA compare
A4249_RS13045 -0.2 -2.1 glycosyltransferase family 1 protein compare
A4249_RS13495 -0.2 -0.6 organic hydroperoxide resistance protein compare
A4249_RS09160 -0.2 -1.0 MmcQ/YjbR family DNA-binding protein compare
A4249_RS05460 -0.2 -1.3 iron ABC transporter permease compare
A4249_RS00990 -0.2 -0.9 hypothetical protein compare
A4249_RS13165 -0.2 -1.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase compare
A4249_RS01645 -0.2 -1.3 crotonase/enoyl-CoA hydratase family protein compare
A4249_RS09880 -0.2 -2.1 TonB-dependent receptor compare
A4249_RS07985 -0.2 -0.8 type II toxin-antitoxin system VapC family toxin compare
A4249_RS10135 -0.2 -1.0 phage head-tail adapter protein compare
A4249_RS06125 -0.2 -1.0 hypothetical protein compare
A4249_RS06370 -0.2 -0.6 hypothetical protein compare
A4249_RS04275 -0.2 -1.6 hypothetical protein compare
A4249_RS00545 -0.2 -1.0 hypothetical protein compare
A4249_RS08705 -0.2 -1.2 response regulator compare
A4249_RS12045 -0.2 -1.0 TadE/TadG family type IV pilus assembly protein compare
A4249_RS04485 -0.2 -0.4 phage holin family protein compare
A4249_RS04315 -0.2 -1.4 polysaccharide biosynthesis/export family protein compare
A4249_RS11425 -0.2 -0.7 ATP-binding cassette domain-containing protein compare
A4249_RS08285 -0.2 -0.5 preQ(1) synthase compare
A4249_RS08875 -0.2 -1.8 beta/gamma crystallin-related protein compare
A4249_RS07110 -0.2 -1.6 DUF4043 family protein compare
A4249_RS12240 -0.2 -1.1 hydroxyisourate hydrolase compare
A4249_RS14565 -0.2 -0.9 DUF488 domain-containing protein compare
A4249_RS07665 -0.2 -0.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS03595 -0.2 -1.7 3-hydroxyisobutyrate dehydrogenase compare
A4249_RS00100 -0.2 -0.7 PadR family transcriptional regulator compare
A4249_RS07165 -0.2 -1.9 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS00310 -0.2 -1.2 acetoacetyl-CoA reductase compare
A4249_RS05550 -0.2 -1.4 nuclear transport factor 2 family protein compare
A4249_RS13480 -0.2 -1.1 protein-export chaperone SecB compare
A4249_RS07865 -0.2 -1.0 RluA family pseudouridine synthase compare
A4249_RS02540 -0.2 -1.6 LysR family transcriptional regulator compare
A4249_RS01725 -0.2 -0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Uracil across organisms