Experiment set2S287 for Phocaeicola dorei CL03T12C01

Compare to:

Inulin from chicory; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS00475 -8.0 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS10440 -7.8 -5.4 threonine synthase compare
ABI39_RS10215 -7.4 -7.2 3-isopropylmalate dehydrogenase compare
ABI39_RS02975 -7.1 -8.5 argininosuccinate synthase compare
ABI39_RS00405 -7.1 -17.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS01300 -7.1 -8.4 NADP-specific glutamate dehydrogenase compare
ABI39_RS02960 -7.0 -8.3 pyrroline-5-carboxylate reductase compare
ABI39_RS07095 -6.9 -14.0 argininosuccinate lyase compare
ABI39_RS07790 -6.8 -8.1 M20 family metallo-hydrolase compare
ABI39_RS07005 -6.8 -6.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS02980 -6.7 -6.5 N-acetyltransferase compare
ABI39_RS12675 -6.6 -4.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS19930 -6.6 -6.4 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04685 -6.6 -7.1 acetylglutamate kinase compare
ABI39_RS02870 -6.5 -7.7 acetylornithine carbamoyltransferase compare
ABI39_RS10260 -6.4 -7.6 adenylosuccinate synthase compare
ABI39_RS21065 -6.4 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02880 -6.4 -8.8 glutamate 5-kinase compare
ABI39_RS10495 -6.4 -6.2 prephenate dehydrogenase compare
ABI39_RS02970 -6.4 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS00770 -6.4 -11.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10200 -6.3 -11.4 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12645 -6.3 -12.8 chorismate synthase compare
ABI39_RS10205 -6.2 -7.3 3-isopropylmalate dehydratase small subunit compare
ABI39_RS14225 -6.1 -8.4 glycosyltransferase compare
ABI39_RS16910 -6.1 -7.3 3-phosphoglycerate dehydrogenase compare
ABI39_RS02875 -6.1 -10.1 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS14230 -6.0 -11.5 alpha-amylase compare
ABI39_RS21075 -6.0 -5.8 tryptophan synthase subunit alpha compare
ABI39_RS10430 -6.0 -10.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS02965 -5.9 -12.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10435 -5.9 -9.0 cofactor-independent phosphoglycerate mutase compare
ABI39_RS02315 -5.8 -4.0 IMP dehydrogenase compare
ABI39_RS10510 -5.8 -9.6 prephenate dehydratase compare
ABI39_RS16905 -5.7 -8.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS19935 -5.7 -6.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS04695 -5.6 -8.5 shikimate kinase compare
ABI39_RS10505 -5.5 -9.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12665 -5.5 -3.8 shikimate dehydrogenase compare
ABI39_RS12715 -5.5 -9.8 dihydroxy-acid dehydratase compare
ABI39_RS12720 -5.4 -9.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10210 -5.4 -12.4 2-isopropylmalate synthase compare
ABI39_RS17420 -5.4 -7.3 serine hydroxymethyltransferase compare
ABI39_RS06055 -5.3 -7.3 phosphoribosylamine--glycine ligase compare
ABI39_RS10640 -5.3 -11.7 serine dehydratase subunit alpha family protein compare
ABI39_RS11835 -5.2 -3.6 histidinol dehydrogenase compare
ABI39_RS19925 -5.2 -8.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS21060 -5.1 -9.7 anthranilate phosphoribosyltransferase compare
ABI39_RS10870 -5.1 -13.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS06250 -5.1 -14.5 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS17315 -5.1 -7.7 alpha amylase C-terminal domain-containing protein compare
ABI39_RS21045 -5.1 -3.5 tryptophan synthase subunit beta compare
ABI39_RS12735 -5.0 -7.6 ketol-acid reductoisomerase compare
ABI39_RS05175 -5.0 -7.4 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS06670 -4.9 -13.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS02500 -4.9 -11.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS06675 -4.7 -8.9 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS12955 -4.7 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS04245 -4.7 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS11845 -4.4 -4.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11830 -4.4 -4.2 ATP phosphoribosyltransferase compare
ABI39_RS10195 -4.4 -6.2 2-isopropylmalate synthase compare
ABI39_RS14150 -4.3 -13.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS10500 -4.2 -4.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS05660 -4.1 -10.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS11840 -4.1 -3.9 histidinol-phosphate transaminase compare
ABI39_RS21050 -4.0 -6.4 anthranilate synthase component I family protein compare
ABI39_RS14220 -3.9 -9.8 glycogen debranching enzyme N-terminal domain-containing protein compare
ABI39_RS17945 -3.7 -12.8 glutamine synthetase III compare
ABI39_RS19920 -3.5 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS04860 -3.5 -3.0 HigA family addiction module antidote protein compare
ABI39_RS04795 -3.5 -2.3 M28 family peptidase compare
ABI39_RS04690 -3.5 -10.7 biosynthetic arginine decarboxylase compare
ABI39_RS19950 -3.3 -2.3 diaminopimelate decarboxylase compare
ABI39_RS14560 -3.3 -3.1 aspartate 1-decarboxylase compare
ABI39_RS00205 -3.2 -2.2 phosphoglucosamine mutase compare
ABI39_RS10650 -3.1 -18.6 AraC family transcriptional regulator compare
ABI39_RS21350 -3.0 -2.0 aspartate--ammonia ligase compare
ABI39_RS09575 -3.0 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS19945 -2.9 -11.1 aspartate kinase compare
ABI39_RS16885 -2.8 -2.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS09845 -2.8 -1.9 (d)CMP kinase compare
ABI39_RS01415 -2.8 -1.9 branched-chain amino acid aminotransferase compare
ABI39_RS04505 -2.8 -8.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS19385 -2.6 -2.9 hypothetical protein compare
ABI39_RS19915 -2.6 -13.4 formyltetrahydrofolate deformylase compare
ABI39_RS04700 -2.6 -3.0 type I DNA topoisomerase compare
ABI39_RS07090 -2.6 -1.7 hypothetical protein compare
ABI39_RS04280 -2.6 -5.3 DUF4292 domain-containing protein compare
ABI39_RS14715 -2.6 -6.6 RidA family protein compare
ABI39_RS12725 -2.5 -4.1 acetolactate synthase small subunit compare
ABI39_RS08305 -2.4 -8.0 DUF4831 family protein compare
ABI39_RS09195 -2.4 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS15415 -2.3 -5.1 hypothetical protein compare
ABI39_RS04885 -2.2 -1.5 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS18745 -2.2 -3.5 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS08035 -2.2 -1.5 adenylosuccinate lyase compare
ABI39_RS21055 -2.2 -5.1 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS02755 -2.1 -1.4 glycosyltransferase compare
ABI39_RS06995 -2.0 -8.1 tetratricopeptide repeat protein compare
ABI39_RS12770 -2.0 -3.7 hypothetical protein compare
ABI39_RS12565 -2.0 -7.0 hypothetical protein compare
ABI39_RS10110 -2.0 -10.4 S9 family peptidase compare
ABI39_RS17170 -2.0 -1.3 protein BatD compare
ABI39_RS17320 -2.0 -2.2 YhcH/YjgK/YiaL family protein compare
ABI39_RS11405 -2.0 -10.2 hypothetical protein compare
ABI39_RS01360 -1.9 -5.8 hypothetical protein compare
ABI39_RS15410 -1.9 -6.5 DUF4296 domain-containing protein compare
ABI39_RS12560 -1.9 -8.1 GGGtGRT protein compare
ABI39_RS17950 -1.9 -2.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS02985 -1.9 -6.1 arginine repressor compare
ABI39_RS17640 -1.8 -4.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS12755 -1.8 -2.3 SurA N-terminal domain-containing protein compare
ABI39_RS06380 -1.8 -8.6 GH3 auxin-responsive promoter family protein compare
ABI39_RS18330 -1.8 -8.4 PD40 domain-containing protein compare
ABI39_RS08175 -1.8 -3.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS00520 -1.8 -8.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS11940 -1.7 -10.6 saccharopine dehydrogenase family protein compare
ABI39_RS08195 -1.7 -5.9 hypothetical protein compare
ABI39_RS01325 -1.7 -6.7 phosphoenolpyruvate synthase compare
ABI39_RS04970 -1.7 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS16895 -1.7 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS14185 -1.6 -9.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
ABI39_RS08180 -1.6 -10.8 anaerobic ribonucleoside triphosphate reductase compare
ABI39_RS03625 -1.6 -5.1 type I methionyl aminopeptidase compare
ABI39_RS12945 -1.6 -2.7 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS17175 -1.5 -3.4 tetratricopeptide repeat protein compare
ABI39_RS06115 -1.5 -7.0 phosphatase PAP2 family protein compare
ABI39_RS05450 -1.5 -3.7 redox-regulated ATPase YchF compare
ABI39_RS09245 -1.5 -8.2 cardiolipin synthase compare
ABI39_RS09285 -1.4 -1.8 hypothetical protein compare
ABI39_RS09850 -1.4 -3.3 energy transducer TonB compare
ABI39_RS09835 -1.4 -4.2 6-phosphofructokinase compare
ABI39_RS12970 -1.4 -5.7 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS00515 -1.4 -2.6 hypothetical protein compare
ABI39_RS11875 -1.4 -5.1 OmpH family outer membrane protein compare
ABI39_RS19985 -1.3 -1.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS12670 -1.3 -3.3 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS17965 -1.2 -3.7 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS16255 -1.2 -3.3 hypothetical protein compare
ABI39_RS08480 -1.2 -1.7 histidine kinase compare
ABI39_RS04930 -1.2 -2.6 helix-turn-helix transcriptional regulator compare
ABI39_RS23105 -1.2 -1.9 hypothetical protein compare
ABI39_RS12805 -1.2 -2.2 hypothetical protein compare
ABI39_RS08850 -1.2 -3.0 toprim domain-containing protein compare
ABI39_RS22175 -1.2 -1.6 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS22955 -1.1 -3.3 hypothetical protein compare
ABI39_RS03830 -1.1 -1.7 ribosome-associated translation inhibitor RaiA compare
ABI39_RS17730 -1.1 -6.5 carboxynorspermidine decarboxylase compare
ABI39_RS16870 -1.1 -1.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS00105 -1.1 -1.4 hypothetical protein compare
ABI39_RS09230 -1.1 -1.2 hypothetical protein compare
ABI39_RS20615 -1.1 -6.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS12965 -1.1 -5.4 hypothetical protein compare
ABI39_RS17985 -1.1 -3.5 glutamine-hydrolyzing GMP synthase compare
ABI39_RS07010 -1.1 -1.3 pyruvate kinase compare
ABI39_RS15360 -1.1 -2.9 Na+/H+ antiporter NhaC family protein compare
ABI39_RS20860 -1.1 -1.7 HU family DNA-binding protein compare
ABI39_RS00760 -1.0 -2.0 YjgP/YjgQ family permease compare
ABI39_RS12980 -1.0 -2.3 HAD family hydrolase compare
ABI39_RS00050 -1.0 -2.3 hypothetical protein compare
ABI39_RS15840 -1.0 -3.1 hypothetical protein compare
ABI39_RS17205 -1.0 -1.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS06010 -1.0 -4.9 polysaccharide deacetylase family protein compare
ABI39_RS09670 -1.0 -1.7 cardiolipin synthase compare
ABI39_RS20070 -0.9 -4.9 UDP-glucose 4-epimerase GalE compare
ABI39_RS02140 -0.9 -1.6 TetR/AcrR family transcriptional regulator compare
ABI39_RS07815 -0.9 -2.9 RNA polymerase sigma factor compare
ABI39_RS13150 -0.9 -4.7 S41 family peptidase compare
ABI39_RS17755 -0.9 -2.2 thiazole synthase compare
ABI39_RS09960 -0.9 -2.9 NADP-dependent isocitrate dehydrogenase compare
ABI39_RS06060 -0.9 -3.0 S9 family peptidase compare
ABI39_RS08205 -0.9 -3.7 diaminopimelate dehydrogenase compare
ABI39_RS02285 -0.9 -1.9 DNA mismatch repair endonuclease MutL compare
ABI39_RS01295 -0.9 -5.1 NADP-dependent malic enzyme compare
ABI39_RS11545 -0.9 -3.4 hypothetical protein compare
ABI39_RS17745 -0.9 -1.5 sulfur carrier protein ThiS compare
ABI39_RS14360 -0.8 -4.8 6-phosphogluconolactonase compare
ABI39_RS16875 -0.8 -1.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS16320 -0.8 -1.4 DUF3989 domain-containing protein compare
ABI39_RS13000 -0.8 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS16880 -0.8 -1.5 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS17775 -0.8 -4.7 2-iminoacetate synthase ThiH compare
ABI39_RS07000 -0.8 -1.9 site-specific tyrosine recombinase XerD compare
ABI39_RS04730 -0.8 -1.4 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS23150 -0.8 -1.2 S26 family signal peptidase compare
ABI39_RS16095 -0.8 -1.4 helix-turn-helix domain-containing protein compare
ABI39_RS07420 -0.8 -3.0 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20080 -0.8 -3.3 electron transport complex subunit RsxA compare
ABI39_RS21395 -0.8 -3.1 PqqD family protein compare
ABI39_RS22360 -0.8 -1.5 potassium-transporting ATPase subunit F compare
ABI39_RS05280 -0.8 -5.7 S41 family peptidase compare
ABI39_RS16040 -0.8 -0.8 hypothetical protein compare
ABI39_RS04865 -0.8 -3.3 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS19845 -0.8 -1.5 hypothetical protein compare
ABI39_RS17770 -0.8 -2.6 flavodoxin family protein compare
ABI39_RS09955 -0.8 -3.2 aconitate hydratase compare
ABI39_RS02060 -0.8 -2.6 translocation/assembly module TamB domain-containing protein compare
ABI39_RS17795 -0.8 -3.5 thiamine phosphate synthase compare
ABI39_RS17780 -0.8 -3.2 HesA/MoeB/ThiF family protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Inulin from chicory; autoclaved across organisms