Experiment set2S286 for Phocaeicola dorei CL03T12C01

Compare to:

beta-Cyclodextrin 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -7.6 -5.3 acetylornithine carbamoyltransferase compare
ABI39_RS07005 -7.5 -5.2 type II 3-dehydroquinate dehydratase compare
ABI39_RS04430 -7.0 -16.9 glycoside hydrolase family 13 protein compare
ABI39_RS02975 -7.0 -9.5 argininosuccinate synthase compare
ABI39_RS04425 -6.6 -14.0 hypothetical protein compare
ABI39_RS04455 -6.5 -16.7 TonB-dependent receptor compare
ABI39_RS07095 -6.5 -17.1 argininosuccinate lyase compare
ABI39_RS04685 -6.4 -8.7 acetylglutamate kinase compare
ABI39_RS19925 -6.4 -6.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02875 -6.4 -9.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS10205 -6.3 -7.5 3-isopropylmalate dehydratase small subunit compare
ABI39_RS07790 -6.3 -9.6 M20 family metallo-hydrolase compare
ABI39_RS21075 -6.3 -6.1 tryptophan synthase subunit alpha compare
ABI39_RS21065 -6.1 -7.2 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02880 -6.1 -11.6 glutamate 5-kinase compare
ABI39_RS02960 -6.1 -12.9 pyrroline-5-carboxylate reductase compare
ABI39_RS21060 -6.1 -8.3 anthranilate phosphoribosyltransferase compare
ABI39_RS12645 -6.1 -15.1 chorismate synthase compare
ABI39_RS02970 -6.1 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10510 -6.0 -8.2 prephenate dehydratase compare
ABI39_RS10260 -6.0 -10.0 adenylosuccinate synthase compare
ABI39_RS19930 -6.0 -7.1 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10495 -5.9 -8.0 prephenate dehydrogenase compare
ABI39_RS02980 -5.9 -9.7 N-acetyltransferase compare
ABI39_RS00405 -5.9 -20.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04460 -5.9 -16.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS10195 -5.8 -12.6 2-isopropylmalate synthase compare
ABI39_RS04695 -5.7 -8.6 shikimate kinase compare
ABI39_RS04860 -5.5 -6.5 HigA family addiction module antidote protein compare
ABI39_RS10200 -5.5 -15.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS00770 -5.5 -14.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10505 -5.4 -9.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS16910 -5.4 -9.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS12715 -5.3 -10.8 dihydroxy-acid dehydratase compare
ABI39_RS11830 -5.3 -3.7 ATP phosphoribosyltransferase compare
ABI39_RS10640 -5.3 -12.2 serine dehydratase subunit alpha family protein compare
ABI39_RS02315 -5.3 -8.1 IMP dehydrogenase compare
ABI39_RS12720 -5.2 -11.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS16905 -5.2 -11.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10215 -5.2 -13.7 3-isopropylmalate dehydrogenase compare
ABI39_RS05660 -5.2 -8.5 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS21045 -5.1 -3.5 tryptophan synthase subunit beta compare
ABI39_RS00475 -5.1 -8.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02965 -5.0 -13.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS17420 -5.0 -8.2 serine hydroxymethyltransferase compare
ABI39_RS06670 -4.9 -14.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS10430 -4.9 -15.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12735 -4.8 -7.9 ketol-acid reductoisomerase compare
ABI39_RS06055 -4.8 -9.0 phosphoribosylamine--glycine ligase compare
ABI39_RS10210 -4.8 -13.3 2-isopropylmalate synthase compare
ABI39_RS10440 -4.7 -9.9 threonine synthase compare
ABI39_RS05175 -4.7 -7.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS04245 -4.7 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS12665 -4.7 -7.1 shikimate dehydrogenase compare
ABI39_RS08195 -4.7 -7.0 hypothetical protein compare
ABI39_RS10870 -4.7 -14.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS10500 -4.6 -3.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10435 -4.6 -11.9 cofactor-independent phosphoglycerate mutase compare
ABI39_RS06250 -4.5 -13.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS12675 -4.5 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS11845 -4.5 -3.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS06995 -4.5 -8.5 tetratricopeptide repeat protein compare
ABI39_RS06675 -4.5 -9.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS19935 -4.5 -9.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS01300 -4.4 -10.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS19920 -4.2 -10.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS06010 -4.1 -9.6 polysaccharide deacetylase family protein compare
ABI39_RS11840 -4.1 -3.9 histidinol-phosphate transaminase compare
ABI39_RS11835 -4.1 -5.5 histidinol dehydrogenase compare
ABI39_RS21050 -4.0 -8.5 anthranilate synthase component I family protein compare
ABI39_RS12770 -4.0 -2.7 hypothetical protein compare
ABI39_RS18330 -4.0 -9.7 PD40 domain-containing protein compare
ABI39_RS12955 -4.0 -6.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS06380 -3.8 -10.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS15410 -3.8 -8.4 DUF4296 domain-containing protein compare
ABI39_RS02500 -3.8 -10.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS10110 -3.6 -12.4 S9 family peptidase compare
ABI39_RS09245 -3.6 -14.6 cardiolipin synthase compare
ABI39_RS11405 -3.6 -12.6 hypothetical protein compare
ABI39_RS04795 -3.5 -2.4 M28 family peptidase compare
ABI39_RS10650 -3.5 -18.6 AraC family transcriptional regulator compare
ABI39_RS06920 -3.5 -6.5 glycosyltransferase compare
ABI39_RS08305 -3.4 -9.0 DUF4831 family protein compare
ABI39_RS04690 -3.4 -13.6 biosynthetic arginine decarboxylase compare
ABI39_RS12725 -3.4 -8.6 acetolactate synthase small subunit compare
ABI39_RS19945 -3.3 -11.6 aspartate kinase compare
ABI39_RS09685 -3.2 -2.1 hypothetical protein compare
ABI39_RS15415 -3.2 -5.4 hypothetical protein compare
ABI39_RS19985 -3.2 -2.1 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04280 -3.2 -5.0 DUF4292 domain-containing protein compare
ABI39_RS11485 -3.1 -4.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS07090 -3.1 -2.3 hypothetical protein compare
ABI39_RS14560 -3.1 -3.4 aspartate 1-decarboxylase compare
ABI39_RS17945 -3.0 -13.8 glutamine synthetase III compare
ABI39_RS00760 -3.0 -2.8 YjgP/YjgQ family permease compare
ABI39_RS01360 -3.0 -7.8 hypothetical protein compare
ABI39_RS19950 -3.0 -2.9 diaminopimelate decarboxylase compare
ABI39_RS21350 -3.0 -2.0 aspartate--ammonia ligase compare
ABI39_RS15320 -3.0 -12.7 PorT family protein compare
ABI39_RS12965 -2.9 -10.0 hypothetical protein compare
ABI39_RS17195 -2.9 -11.8 hypothetical protein compare
ABI39_RS17950 -2.9 -1.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS09845 -2.9 -1.9 (d)CMP kinase compare
ABI39_RS01415 -2.8 -1.9 branched-chain amino acid aminotransferase compare
ABI39_RS05280 -2.8 -14.1 S41 family peptidase compare
ABI39_RS12970 -2.8 -8.2 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS06115 -2.7 -9.7 phosphatase PAP2 family protein compare
ABI39_RS00205 -2.7 -2.6 phosphoglucosamine mutase compare
ABI39_RS17315 -2.7 -12.7 alpha amylase C-terminal domain-containing protein compare
ABI39_RS16705 -2.7 -17.8 translocation/assembly module TamB compare
ABI39_RS11545 -2.7 -7.7 hypothetical protein compare
ABI39_RS08850 -2.6 -5.3 toprim domain-containing protein compare
ABI39_RS17175 -2.6 -3.5 tetratricopeptide repeat protein compare
ABI39_RS13185 -2.6 -2.3 manganese efflux pump compare
ABI39_RS20355 -2.5 -16.0 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS16895 -2.5 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS15425 -2.5 -14.5 BamA/TamA family outer membrane protein compare
ABI39_RS21055 -2.4 -6.1 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS16885 -2.4 -3.1 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS09575 -2.4 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS19385 -2.4 -3.0 hypothetical protein compare
ABI39_RS02290 -2.4 -3.9 hypothetical protein compare
ABI39_RS09850 -2.4 -3.4 energy transducer TonB compare
ABI39_RS04505 -2.4 -6.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS12995 -2.3 -10.5 inositol-3-phosphate synthase compare
ABI39_RS20930 -2.3 -13.3 tetratricopeptide repeat protein compare
ABI39_RS08035 -2.3 -1.5 adenylosuccinate lyase compare
ABI39_RS14250 -2.2 -9.1 8-amino-7-oxononanoate synthase compare
ABI39_RS09230 -2.2 -2.6 hypothetical protein compare
ABI39_RS18745 -2.2 -2.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS02755 -2.2 -1.5 glycosyltransferase compare
ABI39_RS12960 -2.2 -7.0 NDP-sugar synthase compare
ABI39_RS00210 -2.1 -4.8 DUF4827 domain-containing protein compare
ABI39_RS04885 -2.1 -2.4 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS14245 -2.1 -11.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS04930 -2.1 -3.1 helix-turn-helix transcriptional regulator compare
ABI39_RS02140 -2.1 -3.1 TetR/AcrR family transcriptional regulator compare
ABI39_RS12755 -2.1 -1.4 SurA N-terminal domain-containing protein compare
ABI39_RS14255 -2.0 -2.1 DUF452 family protein compare
ABI39_RS17640 -2.0 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS14260 -2.0 -10.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS04700 -2.0 -3.4 type I DNA topoisomerase compare
ABI39_RS07815 -2.0 -6.3 RNA polymerase sigma factor compare
ABI39_RS21620 -2.0 -10.3 triose-phosphate isomerase compare
ABI39_RS17320 -2.0 -3.9 YhcH/YjgK/YiaL family protein compare
ABI39_RS17170 -2.0 -1.3 protein BatD compare
ABI39_RS03880 -1.9 -12.7 PDZ domain-containing protein compare
ABI39_RS00515 -1.9 -2.6 hypothetical protein compare
ABI39_RS05450 -1.9 -4.5 redox-regulated ATPase YchF compare
ABI39_RS14715 -1.9 -6.1 RidA family protein compare
ABI39_RS07000 -1.9 -3.5 site-specific tyrosine recombinase XerD compare
ABI39_RS20070 -1.8 -8.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS20395 -1.8 -2.8 DedA family protein compare
ABI39_RS14225 -1.8 -7.2 glycosyltransferase compare
ABI39_RS13000 -1.7 -6.1 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS09855 -1.7 -1.6 polyprenyl synthetase family protein compare
ABI39_RS06990 -1.7 -9.8 DUF4369 domain-containing protein compare
ABI39_RS12565 -1.7 -6.2 hypothetical protein compare
ABI39_RS04285 -1.7 -9.1 tetratricopeptide repeat protein compare
ABI39_RS14235 -1.7 -3.7 hypothetical protein compare
ABI39_RS14465 -1.7 -6.2 hypothetical protein compare
ABI39_RS04970 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS14240 -1.7 -4.7 biotin synthase BioB compare
ABI39_RS09515 -1.7 -3.3 nucleoside deaminase compare
ABI39_RS09195 -1.6 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS12670 -1.6 -3.9 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS19915 -1.6 -6.7 formyltetrahydrofolate deformylase compare
ABI39_RS17140 -1.6 -1.0 AAA family ATPase compare
ABI39_RS07420 -1.6 -5.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20965 -1.6 -2.3 SPOR domain-containing protein compare
ABI39_RS14265 -1.6 -6.8 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS04145 -1.6 -1.6 transcription elongation factor GreA compare
ABI39_RS09285 -1.6 -1.8 hypothetical protein compare
ABI39_RS14030 -1.6 -4.3 MFS transporter compare
ABI39_RS20410 -1.6 -4.5 GDP-mannose 4,6-dehydratase compare
ABI39_RS23105 -1.5 -1.8 hypothetical protein compare
ABI39_RS11940 -1.5 -9.8 saccharopine dehydrogenase family protein compare
ABI39_RS16515 -1.5 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS13990 -1.5 -5.9 hypothetical protein compare
ABI39_RS12560 -1.5 -7.5 GGGtGRT protein compare
ABI39_RS16235 -1.5 -3.6 hypothetical protein compare
ABI39_RS00520 -1.5 -6.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS17745 -1.5 -1.9 sulfur carrier protein ThiS compare
ABI39_RS16875 -1.5 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS06925 -1.5 -8.2 glycosyltransferase compare
ABI39_RS12945 -1.5 -3.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS10085 -1.4 -2.8 enoyl-ACP reductase compare
ABI39_RS13190 -1.4 -6.9 hypothetical protein compare
ABI39_RS02285 -1.4 -2.1 DNA mismatch repair endonuclease MutL compare
ABI39_RS17755 -1.4 -3.6 thiazole synthase compare
ABI39_RS20615 -1.4 -7.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS16315 -1.4 -1.0 conjugative transposon protein TraK compare
ABI39_RS08785 -1.4 -1.5 DUF3408 domain-containing protein compare
ABI39_RS16305 -1.4 -1.1 DUF4141 domain-containing protein compare
ABI39_RS12980 -1.4 -2.7 HAD family hydrolase compare
ABI39_RS02470 -1.4 -3.4 ATP-dependent DNA helicase RecG compare
ABI39_RS18740 -1.3 -3.9 ATP-binding protein compare
ABI39_RS17750 -1.3 -3.0 thiamine phosphate synthase compare
ABI39_RS15360 -1.3 -4.1 Na+/H+ antiporter NhaC family protein compare
ABI39_RS01325 -1.3 -7.0 phosphoenolpyruvate synthase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source beta-Cyclodextrin across organisms