Experiment set2S285 for Phocaeicola dorei CL03T12C01

Compare to:

beta-Cyclodextrin 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -7.2 -7.0 acetylglutamate kinase compare
ABI39_RS00405 -6.9 -17.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04460 -6.9 -12.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS07790 -6.8 -8.0 M20 family metallo-hydrolase compare
ABI39_RS02980 -6.6 -7.9 N-acetyltransferase compare
ABI39_RS04425 -6.6 -12.6 hypothetical protein compare
ABI39_RS04430 -6.5 -17.4 glycoside hydrolase family 13 protein compare
ABI39_RS21060 -6.5 -6.3 anthranilate phosphoribosyltransferase compare
ABI39_RS00475 -6.5 -7.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS10215 -6.5 -10.7 3-isopropylmalate dehydrogenase compare
ABI39_RS21065 -6.3 -6.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02975 -6.3 -10.5 argininosuccinate synthase compare
ABI39_RS10195 -6.3 -10.5 2-isopropylmalate synthase compare
ABI39_RS10260 -6.3 -8.6 adenylosuccinate synthase compare
ABI39_RS07095 -6.2 -17.4 argininosuccinate lyase compare
ABI39_RS04455 -6.2 -16.8 TonB-dependent receptor compare
ABI39_RS02970 -6.1 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS05660 -6.1 -5.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS06055 -6.1 -5.9 phosphoribosylamine--glycine ligase compare
ABI39_RS10640 -6.0 -9.2 serine dehydratase subunit alpha family protein compare
ABI39_RS02880 -6.0 -10.7 glutamate 5-kinase compare
ABI39_RS02870 -6.0 -9.0 acetylornithine carbamoyltransferase compare
ABI39_RS16910 -5.9 -8.1 3-phosphoglycerate dehydrogenase compare
ABI39_RS19930 -5.9 -7.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS01300 -5.9 -11.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS16905 -5.9 -8.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12715 -5.9 -8.0 dihydroxy-acid dehydratase compare
ABI39_RS10200 -5.9 -13.6 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12645 -5.9 -14.1 chorismate synthase compare
ABI39_RS02960 -5.8 -12.4 pyrroline-5-carboxylate reductase compare
ABI39_RS04695 -5.8 -7.7 shikimate kinase compare
ABI39_RS05175 -5.8 -6.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS02875 -5.7 -10.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS07005 -5.6 -8.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS17420 -5.6 -6.6 serine hydroxymethyltransferase compare
ABI39_RS12720 -5.6 -7.6 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS21075 -5.6 -7.5 tryptophan synthase subunit alpha compare
ABI39_RS10435 -5.5 -10.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10510 -5.4 -11.5 prephenate dehydratase compare
ABI39_RS10205 -5.3 -8.0 3-isopropylmalate dehydratase small subunit compare
ABI39_RS10210 -5.3 -12.2 2-isopropylmalate synthase compare
ABI39_RS11830 -5.2 -3.5 ATP phosphoribosyltransferase compare
ABI39_RS10505 -5.1 -11.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS06250 -5.1 -12.1 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS12675 -5.1 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02315 -5.1 -9.0 IMP dehydrogenase compare
ABI39_RS10440 -5.1 -10.3 threonine synthase compare
ABI39_RS11835 -5.0 -3.5 histidinol dehydrogenase compare
ABI39_RS10495 -5.0 -8.2 prephenate dehydrogenase compare
ABI39_RS10430 -4.9 -14.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS12735 -4.9 -6.6 ketol-acid reductoisomerase compare
ABI39_RS02500 -4.8 -10.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS19925 -4.8 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02965 -4.8 -14.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS19935 -4.7 -8.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS00770 -4.7 -15.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS04245 -4.6 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS06675 -4.6 -8.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10870 -4.6 -13.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS21050 -4.4 -9.1 anthranilate synthase component I family protein compare
ABI39_RS12665 -4.4 -7.2 shikimate dehydrogenase compare
ABI39_RS06670 -4.3 -14.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS21045 -4.3 -5.0 tryptophan synthase subunit beta compare
ABI39_RS10650 -4.2 -18.4 AraC family transcriptional regulator compare
ABI39_RS19920 -4.0 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS10500 -3.9 -4.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS12770 -3.9 -2.7 hypothetical protein compare
ABI39_RS06380 -3.9 -10.3 GH3 auxin-responsive promoter family protein compare
ABI39_RS06995 -3.8 -9.2 tetratricopeptide repeat protein compare
ABI39_RS11845 -3.8 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS14560 -3.7 -2.5 aspartate 1-decarboxylase compare
ABI39_RS06010 -3.6 -9.6 polysaccharide deacetylase family protein compare
ABI39_RS04860 -3.6 -3.9 HigA family addiction module antidote protein compare
ABI39_RS12725 -3.5 -5.9 acetolactate synthase small subunit compare
ABI39_RS11840 -3.5 -4.7 histidinol-phosphate transaminase compare
ABI39_RS19945 -3.5 -13.0 aspartate kinase compare
ABI39_RS08195 -3.5 -7.4 hypothetical protein compare
ABI39_RS04795 -3.4 -2.3 M28 family peptidase compare
ABI39_RS11405 -3.4 -11.7 hypothetical protein compare
ABI39_RS08305 -3.3 -8.4 DUF4831 family protein compare
ABI39_RS12955 -3.3 -6.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS10110 -3.3 -11.2 S9 family peptidase compare
ABI39_RS15410 -3.3 -6.5 DUF4296 domain-containing protein compare
ABI39_RS04690 -3.3 -12.0 biosynthetic arginine decarboxylase compare
ABI39_RS17315 -3.2 -12.6 alpha amylase C-terminal domain-containing protein compare
ABI39_RS18330 -3.2 -9.5 PD40 domain-containing protein compare
ABI39_RS09685 -3.1 -2.0 hypothetical protein compare
ABI39_RS19950 -3.1 -2.9 diaminopimelate decarboxylase compare
ABI39_RS00205 -3.1 -2.1 phosphoglucosamine mutase compare
ABI39_RS01360 -3.0 -7.0 hypothetical protein compare
ABI39_RS17195 -3.0 -11.3 hypothetical protein compare
ABI39_RS04505 -3.0 -7.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS09575 -2.9 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS04280 -2.9 -4.6 DUF4292 domain-containing protein compare
ABI39_RS17950 -2.8 -1.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS00515 -2.8 -3.6 hypothetical protein compare
ABI39_RS21055 -2.8 -4.9 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS18745 -2.8 -1.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS09845 -2.7 -1.9 (d)CMP kinase compare
ABI39_RS05450 -2.7 -4.5 redox-regulated ATPase YchF compare
ABI39_RS01415 -2.7 -1.8 branched-chain amino acid aminotransferase compare
ABI39_RS02290 -2.7 -4.1 hypothetical protein compare
ABI39_RS20355 -2.7 -15.7 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS17640 -2.7 -4.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS21350 -2.6 -2.5 aspartate--ammonia ligase compare
ABI39_RS07090 -2.6 -2.1 hypothetical protein compare
ABI39_RS17945 -2.6 -12.5 glutamine synthetase III compare
ABI39_RS17175 -2.5 -3.3 tetratricopeptide repeat protein compare
ABI39_RS13185 -2.5 -2.2 manganese efflux pump compare
ABI39_RS14225 -2.4 -10.4 glycosyltransferase compare
ABI39_RS20395 -2.3 -3.0 DedA family protein compare
ABI39_RS19385 -2.3 -2.9 hypothetical protein compare
ABI39_RS08850 -2.3 -3.3 toprim domain-containing protein compare
ABI39_RS09230 -2.3 -2.8 hypothetical protein compare
ABI39_RS12970 -2.3 -7.4 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS15415 -2.2 -4.9 hypothetical protein compare
ABI39_RS11545 -2.2 -7.4 hypothetical protein compare
ABI39_RS09245 -2.2 -10.6 cardiolipin synthase compare
ABI39_RS04730 -2.2 -2.2 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS12965 -2.2 -8.5 hypothetical protein compare
ABI39_RS14715 -2.2 -6.3 RidA family protein compare
ABI39_RS14465 -2.2 -8.8 hypothetical protein compare
ABI39_RS06920 -2.1 -5.7 glycosyltransferase compare
ABI39_RS04885 -2.1 -2.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS14240 -2.1 -4.6 biotin synthase BioB compare
ABI39_RS02755 -2.1 -1.4 glycosyltransferase compare
ABI39_RS16885 -2.1 -2.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS08035 -2.0 -1.9 adenylosuccinate lyase compare
ABI39_RS09850 -2.0 -3.4 energy transducer TonB compare
ABI39_RS15320 -2.0 -10.4 PorT family protein compare
ABI39_RS17750 -2.0 -4.6 thiamine phosphate synthase compare
ABI39_RS11485 -2.0 -4.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS12560 -2.0 -7.2 GGGtGRT protein compare
ABI39_RS02140 -1.9 -3.0 TetR/AcrR family transcriptional regulator compare
ABI39_RS12755 -1.9 -1.8 SurA N-terminal domain-containing protein compare
ABI39_RS17170 -1.9 -1.3 protein BatD compare
ABI39_RS20070 -1.9 -8.1 UDP-glucose 4-epimerase GalE compare
ABI39_RS12980 -1.9 -3.0 HAD family hydrolase compare
ABI39_RS02985 -1.8 -5.9 arginine repressor compare
ABI39_RS09515 -1.8 -3.7 nucleoside deaminase compare
ABI39_RS07010 -1.8 -1.6 pyruvate kinase compare
ABI39_RS13000 -1.8 -5.3 sigma-54-dependent Fis family transcriptional regulator compare
ABI39_RS12995 -1.8 -9.9 inositol-3-phosphate synthase compare
ABI39_RS12945 -1.8 -4.9 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABI39_RS05280 -1.8 -10.8 S41 family peptidase compare
ABI39_RS04145 -1.8 -1.5 transcription elongation factor GreA compare
ABI39_RS00760 -1.8 -2.3 YjgP/YjgQ family permease compare
ABI39_RS20615 -1.7 -8.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS17755 -1.7 -4.3 thiazole synthase compare
ABI39_RS17320 -1.7 -3.1 YhcH/YjgK/YiaL family protein compare
ABI39_RS14030 -1.7 -3.8 MFS transporter compare
ABI39_RS04700 -1.7 -3.5 type I DNA topoisomerase compare
ABI39_RS04930 -1.7 -5.9 helix-turn-helix transcriptional regulator compare
ABI39_RS12960 -1.7 -6.8 NDP-sugar synthase compare
ABI39_RS19915 -1.7 -9.1 formyltetrahydrofolate deformylase compare
ABI39_RS20930 -1.7 -11.3 tetratricopeptide repeat protein compare
ABI39_RS16895 -1.7 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS16875 -1.7 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS12565 -1.6 -5.7 hypothetical protein compare
ABI39_RS02465 -1.6 -2.4 nucleoside-diphosphate kinase compare
ABI39_RS01325 -1.6 -7.2 phosphoenolpyruvate synthase compare
ABI39_RS06115 -1.6 -7.3 phosphatase PAP2 family protein compare
ABI39_RS16870 -1.6 -2.0 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS11940 -1.6 -9.8 saccharopine dehydrogenase family protein compare
ABI39_RS00520 -1.6 -7.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABI39_RS17140 -1.6 -1.0 AAA family ATPase compare
ABI39_RS02350 -1.6 -4.9 ABC transporter permease compare
ABI39_RS04230 -1.5 -5.6 RNA polymerase factor sigma-54 compare
ABI39_RS06925 -1.5 -8.3 glycosyltransferase compare
ABI39_RS09195 -1.5 -2.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS16880 -1.5 -2.3 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS14245 -1.5 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS12670 -1.5 -3.6 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS17780 -1.5 -6.7 HesA/MoeB/ThiF family protein compare
ABI39_RS15425 -1.5 -10.3 BamA/TamA family outer membrane protein compare
ABI39_RS11350 -1.5 -3.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS22955 -1.4 -3.2 hypothetical protein compare
ABI39_RS09835 -1.4 -4.0 6-phosphofructokinase compare
ABI39_RS06220 -1.4 -8.0 glycosyltransferase family 2 protein compare
ABI39_RS16620 -1.4 -1.3 phage integrase SAM-like domain-containing protein compare
ABI39_RS15760 -1.4 -1.7 hypothetical protein compare
ABI39_RS17850 -1.4 -2.6 alpha-glucan family phosphorylase compare
ABI39_RS12805 -1.4 -2.5 hypothetical protein compare
ABI39_RS02470 -1.4 -3.1 ATP-dependent DNA helicase RecG compare
ABI39_RS14235 -1.4 -3.2 hypothetical protein compare
ABI39_RS07420 -1.3 -4.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS15360 -1.3 -3.8 Na+/H+ antiporter NhaC family protein compare
ABI39_RS14250 -1.3 -5.1 8-amino-7-oxononanoate synthase compare
ABI39_RS14260 -1.3 -7.3 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS08135 -1.3 -1.9 YicC family protein compare
ABI39_RS17775 -1.3 -6.3 2-iminoacetate synthase ThiH compare
ABI39_RS16705 -1.3 -10.2 translocation/assembly module TamB compare
ABI39_RS13990 -1.3 -5.0 hypothetical protein compare
ABI39_RS19615 -1.3 -1.7 hypothetical protein compare
ABI39_RS16385 -1.3 -2.6 hypothetical protein compare
ABI39_RS11875 -1.3 -3.6 OmpH family outer membrane protein compare
ABI39_RS02285 -1.3 -1.8 DNA mismatch repair endonuclease MutL compare
ABI39_RS16305 -1.3 -1.1 DUF4141 domain-containing protein compare
ABI39_RS14265 -1.2 -5.1 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS19985 -1.2 -1.0 pyridoxal phosphate-dependent aminotransferase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source beta-Cyclodextrin across organisms