Experiment set2S282 for Phocaeicola dorei CL03T12C01

Compare to:

amylopectin from maize; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS19930 -7.2 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04685 -7.1 -7.3 acetylglutamate kinase compare
ABI39_RS02875 -6.9 -4.8 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS07095 -6.5 -15.6 argininosuccinate lyase compare
ABI39_RS21075 -6.4 -4.4 tryptophan synthase subunit alpha compare
ABI39_RS04695 -6.3 -7.0 shikimate kinase compare
ABI39_RS04455 -6.3 -15.2 TonB-dependent receptor compare
ABI39_RS21065 -6.2 -6.0 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10440 -6.2 -7.0 threonine synthase compare
ABI39_RS02870 -6.1 -8.3 acetylornithine carbamoyltransferase compare
ABI39_RS04430 -6.1 -18.0 glycoside hydrolase family 13 protein compare
ABI39_RS02975 -6.1 -10.6 argininosuccinate synthase compare
ABI39_RS04460 -6.0 -15.0 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04425 -6.0 -14.9 hypothetical protein compare
ABI39_RS07790 -5.9 -9.8 M20 family metallo-hydrolase compare
ABI39_RS02980 -5.8 -8.8 N-acetyltransferase compare
ABI39_RS02880 -5.8 -11.0 glutamate 5-kinase compare
ABI39_RS19925 -5.7 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10435 -5.7 -8.7 cofactor-independent phosphoglycerate mutase compare
ABI39_RS21060 -5.7 -8.6 anthranilate phosphoribosyltransferase compare
ABI39_RS07005 -5.7 -5.7 type II 3-dehydroquinate dehydratase compare
ABI39_RS10215 -5.6 -13.0 3-isopropylmalate dehydrogenase compare
ABI39_RS16905 -5.6 -9.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS12645 -5.5 -14.4 chorismate synthase compare
ABI39_RS10260 -5.4 -9.7 adenylosuccinate synthase compare
ABI39_RS10510 -5.4 -10.9 prephenate dehydratase compare
ABI39_RS02315 -5.4 -6.3 IMP dehydrogenase compare
ABI39_RS21050 -5.3 -8.1 anthranilate synthase component I family protein compare
ABI39_RS10195 -5.3 -12.6 2-isopropylmalate synthase compare
ABI39_RS02970 -5.3 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02960 -5.2 -13.4 pyrroline-5-carboxylate reductase compare
ABI39_RS10640 -5.2 -11.1 serine dehydratase subunit alpha family protein compare
ABI39_RS12665 -5.2 -3.6 shikimate dehydrogenase compare
ABI39_RS10200 -5.2 -14.1 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12715 -5.1 -9.8 dihydroxy-acid dehydratase compare
ABI39_RS10505 -5.1 -9.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10430 -5.1 -13.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS11830 -5.1 -3.5 ATP phosphoribosyltransferase compare
ABI39_RS06055 -5.1 -6.9 phosphoribosylamine--glycine ligase compare
ABI39_RS12720 -5.0 -10.1 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS00770 -5.0 -14.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10495 -4.9 -8.1 prephenate dehydrogenase compare
ABI39_RS06010 -4.9 -8.0 polysaccharide deacetylase family protein compare
ABI39_RS06380 -4.9 -8.7 GH3 auxin-responsive promoter family protein compare
ABI39_RS06670 -4.8 -13.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS16910 -4.8 -10.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS00475 -4.7 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS02965 -4.7 -10.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04475 -4.6 -16.7 alpha-amylase compare
ABI39_RS01655 -4.6 -11.6 methylmalonyl-CoA mutase compare
ABI39_RS04245 -4.6 -1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS21045 -4.6 -4.4 tryptophan synthase subunit beta compare
ABI39_RS11835 -4.5 -5.3 histidinol dehydrogenase compare
ABI39_RS00405 -4.5 -22.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS20355 -4.5 -16.6 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS10205 -4.5 -7.9 3-isopropylmalate dehydratase small subunit compare
ABI39_RS05660 -4.5 -8.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS19935 -4.5 -8.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS17420 -4.4 -7.9 serine hydroxymethyltransferase compare
ABI39_RS06250 -4.4 -14.4 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS10210 -4.3 -12.4 2-isopropylmalate synthase compare
ABI39_RS11845 -4.3 -3.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS01650 -4.3 -8.9 methylmalonyl-CoA mutase small subunit compare
ABI39_RS10500 -4.3 -2.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS06675 -4.2 -8.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS15410 -4.2 -7.8 DUF4296 domain-containing protein compare
ABI39_RS02500 -4.2 -9.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS10650 -4.2 -16.0 AraC family transcriptional regulator compare
ABI39_RS12735 -4.1 -8.9 ketol-acid reductoisomerase compare
ABI39_RS06995 -4.1 -8.1 tetratricopeptide repeat protein compare
ABI39_RS11840 -4.0 -2.8 histidinol-phosphate transaminase compare
ABI39_RS09245 -4.0 -14.9 cardiolipin synthase compare
ABI39_RS08195 -4.0 -7.1 hypothetical protein compare
ABI39_RS08850 -3.9 -4.5 toprim domain-containing protein compare
ABI39_RS02290 -3.9 -3.5 hypothetical protein compare
ABI39_RS10870 -3.8 -11.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS15320 -3.8 -11.9 PorT family protein compare
ABI39_RS12675 -3.7 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS20070 -3.6 -8.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS18330 -3.6 -9.1 PD40 domain-containing protein compare
ABI39_RS12955 -3.6 -6.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19385 -3.6 -2.3 hypothetical protein compare
ABI39_RS07090 -3.5 -3.4 hypothetical protein compare
ABI39_RS01360 -3.5 -5.3 hypothetical protein compare
ABI39_RS11545 -3.5 -5.7 hypothetical protein compare
ABI39_RS10110 -3.5 -11.0 S9 family peptidase compare
ABI39_RS08305 -3.5 -6.4 DUF4831 family protein compare
ABI39_RS12770 -3.4 -3.3 hypothetical protein compare
ABI39_RS14255 -3.4 -3.2 DUF452 family protein compare
ABI39_RS20930 -3.4 -16.5 tetratricopeptide repeat protein compare
ABI39_RS04860 -3.4 -2.2 HigA family addiction module antidote protein compare
ABI39_RS05175 -3.3 -5.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS09515 -3.3 -3.7 nucleoside deaminase compare
ABI39_RS12725 -3.3 -5.3 acetolactate synthase small subunit compare
ABI39_RS11405 -3.2 -11.6 hypothetical protein compare
ABI39_RS12420 -3.2 -6.3 OadG family protein compare
ABI39_RS04795 -3.2 -1.6 M28 family peptidase compare
ABI39_RS04930 -3.1 -4.8 helix-turn-helix transcriptional regulator compare
ABI39_RS06235 -3.0 -9.9 UDP-galactopyranose mutase compare
ABI39_RS04280 -3.0 -5.1 DUF4292 domain-containing protein compare
ABI39_RS04505 -3.0 -5.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04690 -3.0 -10.5 biosynthetic arginine decarboxylase compare
ABI39_RS05280 -3.0 -14.4 S41 family peptidase compare
ABI39_RS19920 -2.9 -5.9 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS14245 -2.9 -14.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS13170 -2.9 -11.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS07815 -2.9 -4.7 RNA polymerase sigma factor compare
ABI39_RS14560 -2.9 -2.4 aspartate 1-decarboxylase compare
ABI39_RS09685 -2.9 -1.6 hypothetical protein compare
ABI39_RS00515 -2.9 -2.1 hypothetical protein compare
ABI39_RS06220 -2.9 -10.2 glycosyltransferase family 2 protein compare
ABI39_RS14715 -2.8 -6.3 RidA family protein compare
ABI39_RS17745 -2.8 -1.1 sulfur carrier protein ThiS compare
ABI39_RS20085 -2.8 -6.2 electron transport complex subunit E compare
ABI39_RS14265 -2.8 -8.3 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14240 -2.8 -5.1 biotin synthase BioB compare
ABI39_RS20395 -2.7 -1.9 DedA family protein compare
ABI39_RS12425 -2.7 -8.4 acyl-CoA carboxylase subunit beta compare
ABI39_RS17180 -2.7 -8.0 phosphatase PAP2 family protein compare
ABI39_RS19950 -2.7 -3.1 diaminopimelate decarboxylase compare
ABI39_RS14250 -2.7 -8.6 8-amino-7-oxononanoate synthase compare
ABI39_RS06920 -2.7 -5.3 glycosyltransferase compare
ABI39_RS09575 -2.7 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS15760 -2.7 -1.1 hypothetical protein compare
ABI39_RS09850 -2.7 -3.1 energy transducer TonB compare
ABI39_RS17770 -2.7 -4.7 flavodoxin family protein compare
ABI39_RS03320 -2.6 -8.1 FecR domain-containing protein compare
ABI39_RS14260 -2.6 -9.9 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS17320 -2.6 -3.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS15415 -2.6 -4.2 hypothetical protein compare
ABI39_RS17750 -2.6 -4.0 thiamine phosphate synthase compare
ABI39_RS21620 -2.6 -8.2 triose-phosphate isomerase compare
ABI39_RS18745 -2.6 -1.8 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS22305 -2.6 -2.2 DUF3408 domain-containing protein compare
ABI39_RS13185 -2.6 -1.6 manganese efflux pump compare
ABI39_RS15610 -2.5 -1.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS14235 -2.5 -2.9 hypothetical protein compare
ABI39_RS09845 -2.5 -1.7 (d)CMP kinase compare
ABI39_RS17640 -2.5 -4.6 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS02125 -2.5 -1.2 hypothetical protein compare
ABI39_RS00210 -2.5 -3.8 DUF4827 domain-containing protein compare
ABI39_RS12415 -2.5 -3.0 biotin/lipoyl-binding protein compare
ABI39_RS19985 -2.4 -1.6 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06990 -2.4 -12.4 DUF4369 domain-containing protein compare
ABI39_RS21650 -2.4 -2.3 phage integrase SAM-like domain-containing protein compare
ABI39_RS17310 -2.4 -8.9 hypothetical protein compare
ABI39_RS17755 -2.4 -2.7 thiazole synthase compare
ABI39_RS04700 -2.4 -2.7 type I DNA topoisomerase compare
ABI39_RS08785 -2.4 -1.3 DUF3408 domain-containing protein compare
ABI39_RS17950 -2.3 -2.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS19945 -2.3 -8.2 aspartate kinase compare
ABI39_RS04285 -2.3 -11.2 tetratricopeptide repeat protein compare
ABI39_RS17195 -2.3 -9.6 hypothetical protein compare
ABI39_RS01300 -2.3 -9.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS21350 -2.3 -2.5 aspartate--ammonia ligase compare
ABI39_RS04865 -2.3 -2.8 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS03880 -2.3 -13.6 PDZ domain-containing protein compare
ABI39_RS17175 -2.3 -3.3 tetratricopeptide repeat protein compare
ABI39_RS00240 -2.3 -3.1 NigD-like N-terminal domain-containing protein compare
ABI39_RS11485 -2.3 -4.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS16695 -2.3 -7.8 carbon-nitrogen hydrolase compare
ABI39_RS03160 -2.2 -1.3 helix-turn-helix domain-containing protein compare
ABI39_RS17205 -2.2 -2.5 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS00205 -2.2 -2.5 phosphoglucosamine mutase compare
ABI39_RS00760 -2.2 -1.6 YjgP/YjgQ family permease compare
ABI39_RS04135 -2.2 -12.0 mannose-1-phosphate guanylyltransferase compare
ABI39_RS15425 -2.2 -13.2 BamA/TamA family outer membrane protein compare
ABI39_RS20965 -2.2 -1.3 SPOR domain-containing protein compare
ABI39_RS21055 -2.1 -2.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS20095 -2.1 -6.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS15770 -2.1 -1.9 hypothetical protein compare
ABI39_RS16895 -2.1 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS15400 -2.1 -5.8 TraR/DksA C4-type zinc finger protein compare
ABI39_RS12235 -2.0 -5.6 DUF4738 domain-containing protein compare
ABI39_RS20615 -2.0 -8.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABI39_RS18740 -2.0 -4.2 ATP-binding protein compare
ABI39_RS17965 -2.0 -4.4 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS08555 -2.0 -6.2 Trk system potassium transporter TrkA compare
ABI39_RS20410 -2.0 -4.4 GDP-mannose 4,6-dehydratase compare
ABI39_RS07000 -2.0 -3.1 site-specific tyrosine recombinase XerD compare
ABI39_RS22260 -2.0 -2.6 DUF3873 family protein compare
ABI39_RS13855 -1.9 -4.6 response regulator transcription factor compare
ABI39_RS08035 -1.9 -1.3 adenylosuccinate lyase compare
ABI39_RS20420 -1.9 -9.9 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS16705 -1.9 -12.9 translocation/assembly module TamB compare
ABI39_RS04885 -1.9 -1.8 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS00755 -1.9 -7.6 hypothetical protein compare
ABI39_RS12670 -1.9 -3.6 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS02755 -1.8 -1.2 glycosyltransferase compare
ABI39_RS11140 -1.8 -0.8 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS13010 -1.8 -6.4 hypothetical protein compare
ABI39_RS04145 -1.8 -1.1 transcription elongation factor GreA compare
ABI39_RS12970 -1.8 -6.8 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS10085 -1.8 -2.0 enoyl-ACP reductase compare
ABI39_RS10090 -1.8 -10.5 hypothetical protein compare
ABI39_RS16885 -1.8 -2.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS13990 -1.8 -6.8 hypothetical protein compare
ABI39_RS23150 -1.8 -1.1 S26 family signal peptidase compare
ABI39_RS16870 -1.8 -1.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS20105 -1.8 -4.5 Fe-S cluster domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source amylopectin from maize; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source amylopectin from maize; autoclaved across organisms