Experiment set2S28 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Uracil 0.8921 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS11825 -1.5 -1.9 DUF6521 family protein compare
A4249_RS13805 -1.5 -1.8 HAD family hydrolase compare
A4249_RS10990 -1.3 -2.6 ATP-dependent protease ATPase subunit HslU compare
A4249_RS06665 -1.2 -2.4 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS01590 -1.2 -2.1 site-specific DNA-methyltransferase compare
A4249_RS07105 -1.1 -1.8 hypothetical protein compare
A4249_RS06370 -1.0 -1.7 hypothetical protein compare
A4249_RS11125 -1.0 -7.7 glycosyltransferase family 9 protein compare
A4249_RS03370 -1.0 -1.7 copper-binding protein compare
A4249_RS14905 -1.0 -1.9 phosphonate ABC transporter ATP-binding protein compare
A4249_RS15560 -0.9 -2.1 response regulator compare
A4249_RS16585 -0.9 -2.3 hypothetical protein compare
A4249_RS10430 -0.8 -4.8 S1/P1 Nuclease compare
A4249_RS09265 -0.8 -1.7 exodeoxyribonuclease VII large subunit compare
A4249_RS05620 -0.8 -3.5 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS08300 -0.8 -1.7 cold-shock protein compare
A4249_RS10390 -0.7 -1.7 translation elongation factor 4 compare
A4249_RS07995 -0.7 -1.3 type II 3-dehydroquinate dehydratase compare
A4249_RS12970 -0.7 -2.9 glycosyltransferase family 61 protein compare
A4249_RS13535 -0.7 -2.5 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS11150 -0.7 -4.1 capsular biosynthesis protein compare
A4249_RS12205 -0.7 -1.0 DUF484 family protein compare
A4249_RS05625 -0.6 -5.4 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS12615 -0.6 -2.1 recombinase RecA compare
A4249_RS00925 -0.6 -1.7 multidrug efflux SMR transporter compare
A4249_RS15140 -0.6 -2.3 TraB/GumN family protein compare
A4249_RS13025 -0.6 -4.7 hypothetical protein compare
A4249_RS04450 -0.6 -1.8 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS04960 -0.6 -2.2 UvrD-helicase domain-containing protein compare
A4249_RS12980 -0.6 -5.4 GDP-mannose 4,6-dehydratase compare
A4249_RS14205 -0.6 -0.8 response regulator compare
A4249_RS13175 -0.6 -1.2 Rrf2 family transcriptional regulator compare
A4249_RS06230 -0.6 -1.3 OmpH family outer membrane protein compare
A4249_RS04635 -0.6 -5.0 cyclic nucleotide-binding domain-containing protein compare
A4249_RS13070 -0.6 -4.3 phosphomannomutase/phosphoglucomutase compare
A4249_RS13060 -0.5 -4.5 AGE family epimerase/isomerase compare
A4249_RS13030 -0.5 -3.8 glycosyltransferase family 1 protein compare
A4249_RS01230 -0.5 -0.8 hypothetical protein compare
A4249_RS13045 -0.5 -4.5 glycosyltransferase family 1 protein compare
A4249_RS06435 -0.5 -1.4 tRNA-Asp compare
A4249_RS02325 -0.5 -0.7 23S ribosomal RNA compare
A4249_RS12315 -0.5 -1.7 hypothetical protein compare
A4249_RS15050 -0.5 -2.6 lysozyme inhibitor LprI family protein compare
A4249_RS13035 -0.5 -3.5 hypothetical protein compare
A4249_RS14545 -0.5 -1.9 metallophosphoesterase compare
A4249_RS01765 -0.5 -2.2 DUF3489 domain-containing protein compare
A4249_RS07405 -0.5 -2.4 hypothetical protein compare
A4249_RS12825 -0.5 -1.3 SDR family oxidoreductase compare
A4249_RS00050 -0.5 -0.8 type 1 glutamine amidotransferase compare
A4249_RS14825 -0.5 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS09275 -0.5 -1.9 DUF3035 domain-containing protein compare
A4249_RS09075 -0.5 -1.0 hypothetical protein compare
A4249_RS13450 -0.5 -1.8 PilZ domain-containing protein compare
A4249_RS11310 -0.5 -2.6 DoxX family protein compare
A4249_RS10105 -0.5 -0.8 DUF2460 domain-containing protein compare
A4249_RS16800 -0.4 -1.9 hypothetical protein compare
A4249_RS12330 -0.4 -2.0 hypothetical protein compare
A4249_RS16570 -0.4 -1.8 hypothetical protein compare
A4249_RS11575 -0.4 -1.6 YeeE/YedE family protein compare
A4249_RS13020 -0.4 -2.9 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS10500 -0.4 -1.9 PspA/IM30 family protein compare
A4249_RS12085 -0.4 -0.9 DUF883 family protein compare
A4249_RS03190 -0.4 -1.3 ATPase, T2SS/T4P/T4SS family compare
A4249_RS12305 -0.4 -2.0 glycosyltransferase family 1 protein compare
A4249_RS13395 -0.4 -1.9 DUF2939 domain-containing protein compare
A4249_RS14165 -0.4 -1.6 prolyl-tRNA synthetase associated domain-containing protein compare
A4249_RS01275 -0.4 -2.5 hypothetical protein compare
A4249_RS05960 -0.4 -1.2 MerR family transcriptional regulator compare
A4249_RS15865 -0.4 -0.6 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS08495 -0.4 -0.7 Na+/H+ antiporter subunit E compare
A4249_RS10835 -0.4 -1.6 c-type cytochrome biogenesis protein CcmI compare
A4249_RS03690 -0.4 -0.7 hypothetical protein compare
A4249_RS16485 -0.4 -0.6 hypothetical protein compare
A4249_RS00950 -0.4 -2.1 tetratricopeptide repeat protein compare
A4249_RS07900 -0.4 -1.5 Do family serine endopeptidase compare
A4249_RS15225 -0.4 -1.0 flagellar biosynthesis protein FliQ compare
A4249_RS09725 -0.4 -1.3 hypothetical protein compare
A4249_RS13760 -0.4 -0.9 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS08730 -0.4 -2.8 hypothetical protein compare
A4249_RS01460 -0.4 -0.8 signal peptide peptidase SppA compare
A4249_RS04210 -0.4 -1.7 TMEM175 family protein compare
A4249_RS16365 -0.4 -1.5 DUF393 domain-containing protein compare
A4249_RS08705 -0.4 -1.8 response regulator compare
A4249_RS15730 -0.4 -1.6 TIGR02587 family membrane protein compare
A4249_RS01615 -0.4 -1.1 GNAT family N-acetyltransferase compare
A4249_RS02820 -0.4 -0.9 Ppx/GppA phosphatase family protein compare
A4249_RS08535 -0.4 -0.8 flagellar assembly protein FliX compare
A4249_RS05485 -0.4 -1.0 uracil-DNA glycosylase compare
A4249_RS10035 -0.4 -2.0 hypothetical protein compare
A4249_RS16555 -0.4 -1.2 hypothetical protein compare
A4249_RS04995 -0.4 -1.0 DUF2171 domain-containing protein compare
A4249_RS10460 -0.4 -3.2 ATP-binding protein compare
A4249_RS08855 -0.3 -1.1 L,D-transpeptidase family protein compare
A4249_RS14835 -0.3 -2.0 S41 family peptidase compare
A4249_RS11550 -0.3 -1.5 cupin domain-containing protein compare
A4249_RS10100 -0.3 -1.5 DUF2163 domain-containing protein compare
A4249_RS06550 -0.3 -1.2 chorismate mutase compare
A4249_RS16765 -0.3 -1.1 hypothetical protein compare
A4249_RS08500 -0.3 -1.7 K+/H+ antiporter subunit F compare
A4249_RS00290 -0.3 -0.7 histidine phosphatase family protein compare
A4249_RS12855 -0.3 -1.8 serine protease compare
A4249_RS02875 -0.3 -2.1 autotransporter assembly complex family protein compare
A4249_RS16780 -0.3 -1.5 HNH endonuclease compare
A4249_RS04215 -0.3 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS04765 -0.3 -1.4 ATP-dependent DNA helicase RecG compare
A4249_RS02650 -0.3 -1.0 hypothetical protein compare
A4249_RS08775 -0.3 -1.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
A4249_RS00265 -0.3 -1.0 peroxiredoxin compare
A4249_RS09880 -0.3 -3.0 TonB-dependent receptor compare
A4249_RS15455 -0.3 -0.6 Rieske (2Fe-2S) protein compare
A4249_RS01075 -0.3 -1.4 DNA-binding domain-containing protein compare
A4249_RS06565 -0.3 -1.5 tRNA-Lys compare
A4249_RS07075 -0.3 -2.1 helix-turn-helix domain-containing protein compare
A4249_RS07235 -0.3 -1.9 sugar transferase compare
A4249_RS13745 -0.3 -1.9 DUF3576 domain-containing protein compare
A4249_RS14445 -0.3 -1.0 hypothetical protein compare
A4249_RS11720 -0.3 -0.5 strawberry notch C-terminal domain-containing protein compare
A4249_RS09190 -0.3 -2.0 MAPEG family protein compare
A4249_RS08510 -0.3 -1.2 hypothetical protein compare
A4249_RS11560 -0.3 -0.5 peroxiredoxin compare
A4249_RS10480 -0.3 -0.7 DUF1190 domain-containing protein compare
A4249_RS09735 -0.3 -1.6 NUDIX domain-containing protein compare
A4249_RS07470 -0.3 -0.5 hypothetical protein compare
A4249_RS09160 -0.3 -1.1 MmcQ/YjbR family DNA-binding protein compare
A4249_RS14695 -0.3 -0.7 transcription elongation factor GreA compare
A4249_RS03065 -0.3 -0.8 arsenate reductase (glutaredoxin) compare
A4249_RS02485 -0.3 -1.3 methylmalonyl-CoA mutase family protein compare
A4249_RS05155 -0.3 -1.3 CHASE3 domain-containing protein compare
A4249_RS06070 -0.3 -2.1 NAD(P)-dependent oxidoreductase compare
A4249_RS03590 -0.3 -2.6 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS13125 -0.3 -0.7 ribonuclease PH compare
A4249_RS14900 -0.3 -1.6 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS04795 -0.3 -1.4 CinA family protein compare
A4249_RS08805 -0.3 -2.0 HAMP domain-containing sensor histidine kinase compare
A4249_RS15685 -0.3 -1.7 DUF1206 domain-containing protein compare
A4249_RS13195 -0.3 -1.3 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS12390 -0.3 -1.1 ATP-dependent protease subunit HslV compare
A4249_RS15625 -0.3 -1.4 response regulator compare
A4249_RS15960 -0.3 -0.8 transcriptional regulator compare
A4249_RS04125 -0.3 -0.7 mechanosensitive ion channel family protein compare
A4249_RS13180 -0.3 -0.9 SDR family oxidoreductase compare
A4249_RS02765 -0.3 -0.7 hypothetical protein compare
A4249_RS08470 -0.3 -1.4 RNA methyltransferase compare
A4249_RS01120 -0.3 -1.1 uracil-DNA glycosylase compare
A4249_RS15110 -0.3 -0.6 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS05845 -0.3 -0.5 sigma-70 family RNA polymerase sigma factor compare
A4249_RS10815 -0.3 -0.9 Do family serine endopeptidase compare
A4249_RS09765 -0.3 -1.4 sigma-54 dependent transcriptional regulator compare
A4249_RS09350 -0.3 -0.9 PGPGW domain-containing protein compare
A4249_RS16615 -0.3 -0.9 hypothetical protein compare
A4249_RS04625 -0.3 -1.7 50S ribosomal protein L11 methyltransferase compare
A4249_RS15600 -0.3 -1.8 response regulator compare
A4249_RS14610 -0.3 -2.1 glycosyltransferase family 39 protein compare
A4249_RS05390 -0.3 -0.9 SOS response-associated peptidase family protein compare
A4249_RS04085 -0.3 -0.9 ribonuclease E/G compare
A4249_RS03795 -0.3 -2.4 carboxyl transferase domain-containing protein compare
A4249_RS00260 -0.3 -1.0 YqgE/AlgH family protein compare
A4249_RS15590 -0.3 -1.2 chemotaxis protein CheD compare
A4249_RS01190 -0.3 -0.4 hypothetical protein compare
A4249_RS10935 -0.3 -1.6 hypothetical protein compare
A4249_RS02300 -0.3 -1.4 rhomboid family intramembrane serine protease compare
A4249_RS14950 -0.2 -1.1 ParD-like family protein compare
A4249_RS00855 -0.2 -0.7 hypothetical protein compare
A4249_RS16590 -0.2 -1.2 hypothetical protein compare
A4249_RS06650 -0.2 -1.9 LemA family protein compare
A4249_RS10840 -0.2 -1.3 hypothetical protein compare
A4249_RS08355 -0.2 -1.5 response regulator compare
A4249_RS13700 -0.2 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
A4249_RS11805 -0.2 -0.5 SOS response-associated peptidase compare
A4249_RS11435 -0.2 -2.4 YdcF family protein compare
A4249_RS16265 -0.2 -0.6 helix-turn-helix domain-containing protein compare
A4249_RS05260 -0.2 -1.7 hemerythrin domain-containing protein compare
A4249_RS01905 -0.2 -0.5 TrbC/VirB2 family protein compare
A4249_RS07150 -0.2 -1.9 hypothetical protein compare
A4249_RS11465 -0.2 -1.6 Cys-tRNA(Pro) deacylase compare
A4249_RS09800 -0.2 -1.3 DUF3253 domain-containing protein compare
A4249_RS14760 -0.2 -1.7 NAD-dependent succinate-semialdehyde dehydrogenase compare
A4249_RS10025 -0.2 -1.8 ketol-acid reductoisomerase compare
A4249_RS03810 -0.2 -2.1 biotin carboxylase N-terminal domain-containing protein compare
A4249_RS00800 -0.2 -1.2 5-formyltetrahydrofolate cyclo-ligase compare
A4249_RS12445 -0.2 -1.6 radical SAM family heme chaperone HemW compare
A4249_RS02675 -0.2 -0.9 N-acetyltransferase compare
A4249_RS00720 -0.2 -0.6 DUF1294 domain-containing protein compare
A4249_RS05395 -0.2 -1.2 hypothetical protein compare
A4249_RS03060 -0.2 -0.7 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS05220 -0.2 -1.4 hypothetical protein compare
A4249_RS02060 -0.2 -1.0 SDR family oxidoreductase compare
A4249_RS07195 -0.2 -0.5 hypothetical protein compare
A4249_RS10735 -0.2 -0.9 phosphogluconate dehydratase compare
A4249_RS08885 -0.2 -0.8 DUF465 domain-containing protein compare
A4249_RS10155 -0.2 -1.5 hypothetical protein compare
A4249_RS01125 -0.2 -1.3 hypothetical protein compare
A4249_RS10085 -0.2 -1.2 DnaJ C-terminal domain-containing protein compare
A4249_RS10630 -0.2 -1.1 FAD:protein FMN transferase compare
A4249_RS06780 -0.2 -0.5 YicC family protein compare
A4249_RS04465 -0.2 -1.3 SURF1 family protein compare
A4249_RS00360 -0.2 -0.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
A4249_RS06830 -0.2 -0.8 chorismate mutase compare
A4249_RS01010 -0.2 -1.5 capsular polysaccharide biosynthesis protein compare
A4249_RS16970 -0.2 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Uracil across organisms