Experiment set2S279 for Phocaeicola dorei CL03T12C01

Compare to:

Pectin from apple; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS21075 -5.6 -5.4 tryptophan synthase subunit alpha compare
ABI39_RS19930 -5.4 -6.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS21050 -5.4 -6.4 anthranilate synthase component I family protein compare
ABI39_RS06055 -5.3 -5.1 phosphoribosylamine--glycine ligase compare
ABI39_RS04695 -5.2 -7.1 shikimate kinase compare
ABI39_RS21060 -5.2 -7.9 anthranilate phosphoribosyltransferase compare
ABI39_RS10260 -5.2 -7.9 adenylosuccinate synthase compare
ABI39_RS02870 -5.2 -7.8 acetylornithine carbamoyltransferase compare
ABI39_RS21065 -5.1 -7.0 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02980 -5.0 -8.2 N-acetyltransferase compare
ABI39_RS15375 -4.7 -7.9 sugar kinase compare
ABI39_RS02315 -4.7 -5.6 IMP dehydrogenase compare
ABI39_RS02875 -4.6 -9.7 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS02975 -4.6 -10.1 argininosuccinate synthase compare
ABI39_RS02880 -4.6 -10.1 glutamate 5-kinase compare
ABI39_RS21045 -4.6 -3.1 tryptophan synthase subunit beta compare
ABI39_RS07005 -4.5 -6.9 type II 3-dehydroquinate dehydratase compare
ABI39_RS02960 -4.5 -11.1 pyrroline-5-carboxylate reductase compare
ABI39_RS16905 -4.4 -10.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS10510 -4.4 -9.7 prephenate dehydratase compare
ABI39_RS15380 -4.3 -4.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS10435 -4.3 -9.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS12715 -4.3 -9.5 dihydroxy-acid dehydratase compare
ABI39_RS10495 -4.3 -7.6 prephenate dehydrogenase compare
ABI39_RS07095 -4.3 -17.8 argininosuccinate lyase compare
ABI39_RS12645 -4.3 -14.0 chorismate synthase compare
ABI39_RS10430 -4.2 -12.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS04685 -4.2 -7.5 acetylglutamate kinase compare
ABI39_RS00405 -4.2 -18.9 phosphoribosylformylglycinamidine synthase compare
ABI39_RS04245 -4.1 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS19925 -4.1 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10215 -4.0 -11.2 3-isopropylmalate dehydrogenase compare
ABI39_RS00475 -4.0 -7.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS07790 -4.0 -9.2 M20 family metallo-hydrolase compare
ABI39_RS20070 -4.0 -4.7 UDP-glucose 4-epimerase GalE compare
ABI39_RS02970 -4.0 -9.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02290 -3.9 -2.7 hypothetical protein compare
ABI39_RS10505 -3.9 -10.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS12665 -3.9 -6.3 shikimate dehydrogenase compare
ABI39_RS16910 -3.8 -9.7 3-phosphoglycerate dehydrogenase compare
ABI39_RS11830 -3.8 -3.6 ATP phosphoribosyltransferase compare
ABI39_RS10200 -3.7 -13.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS12720 -3.7 -11.2 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS12735 -3.7 -7.3 ketol-acid reductoisomerase compare
ABI39_RS11835 -3.6 -4.3 histidinol dehydrogenase compare
ABI39_RS17420 -3.6 -7.2 serine hydroxymethyltransferase compare
ABI39_RS11845 -3.6 -4.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS04860 -3.6 -3.2 HigA family addiction module antidote protein compare
ABI39_RS12420 -3.5 -5.3 OadG family protein compare
ABI39_RS12770 -3.5 -2.4 hypothetical protein compare
ABI39_RS05660 -3.5 -7.9 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS19935 -3.4 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS00770 -3.4 -10.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10640 -3.4 -11.0 serine dehydratase subunit alpha family protein compare
ABI39_RS10195 -3.3 -10.5 2-isopropylmalate synthase compare
ABI39_RS10500 -3.3 -4.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS08195 -3.3 -6.0 hypothetical protein compare
ABI39_RS20085 -3.2 -6.0 electron transport complex subunit E compare
ABI39_RS10440 -3.2 -8.0 threonine synthase compare
ABI39_RS06675 -3.1 -7.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS10205 -3.0 -5.4 3-isopropylmalate dehydratase small subunit compare
ABI39_RS13185 -3.0 -1.9 manganese efflux pump compare
ABI39_RS12415 -2.9 -3.4 biotin/lipoyl-binding protein compare
ABI39_RS04795 -2.9 -1.9 M28 family peptidase compare
ABI39_RS12675 -2.9 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS00760 -2.9 -2.5 YjgP/YjgQ family permease compare
ABI39_RS06670 -2.9 -11.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS15410 -2.8 -7.3 DUF4296 domain-containing protein compare
ABI39_RS08305 -2.8 -6.1 DUF4831 family protein compare
ABI39_RS06010 -2.8 -5.9 polysaccharide deacetylase family protein compare
ABI39_RS19985 -2.8 -1.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS06380 -2.7 -8.1 GH3 auxin-responsive promoter family protein compare
ABI39_RS19945 -2.7 -9.6 aspartate kinase compare
ABI39_RS15365 -2.7 -4.3 altronate dehydratase compare
ABI39_RS11405 -2.7 -9.2 hypothetical protein compare
ABI39_RS20095 -2.7 -7.9 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS12425 -2.6 -6.6 acyl-CoA carboxylase subunit beta compare
ABI39_RS09685 -2.6 -1.7 hypothetical protein compare
ABI39_RS18330 -2.6 -7.9 PD40 domain-containing protein compare
ABI39_RS10870 -2.6 -9.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS04280 -2.5 -3.3 DUF4292 domain-containing protein compare
ABI39_RS18745 -2.5 -1.7 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS10110 -2.5 -8.9 S9 family peptidase compare
ABI39_RS06995 -2.5 -6.8 tetratricopeptide repeat protein compare
ABI39_RS14465 -2.5 -7.7 hypothetical protein compare
ABI39_RS19385 -2.5 -2.3 hypothetical protein compare
ABI39_RS19950 -2.5 -3.2 diaminopimelate decarboxylase compare
ABI39_RS11840 -2.5 -3.9 histidinol-phosphate transaminase compare
ABI39_RS04730 -2.4 -1.6 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS20105 -2.4 -4.7 Fe-S cluster domain-containing protein compare
ABI39_RS15475 -2.4 -9.9 glucuronate isomerase compare
ABI39_RS20100 -2.4 -6.6 electron transport complex subunit RsxC compare
ABI39_RS14030 -2.4 -4.3 MFS transporter compare
ABI39_RS19920 -2.4 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS06920 -2.3 -4.3 glycosyltransferase compare
ABI39_RS17195 -2.3 -8.8 hypothetical protein compare
ABI39_RS17175 -2.3 -2.7 tetratricopeptide repeat protein compare
ABI39_RS15480 -2.3 -5.3 tagaturonate reductase compare
ABI39_RS01415 -2.3 -1.5 branched-chain amino acid aminotransferase compare
ABI39_RS02965 -2.3 -10.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS09845 -2.3 -1.5 (d)CMP kinase compare
ABI39_RS04700 -2.2 -2.1 type I DNA topoisomerase compare
ABI39_RS10210 -2.2 -7.4 2-isopropylmalate synthase compare
ABI39_RS07090 -2.2 -2.0 hypothetical protein compare
ABI39_RS01360 -2.2 -5.4 hypothetical protein compare
ABI39_RS17950 -2.2 -2.0 Crp/Fnr family transcriptional regulator compare
ABI39_RS21055 -2.2 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS05175 -2.2 -3.8 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS22955 -2.1 -3.6 hypothetical protein compare
ABI39_RS12430 -2.1 -1.0 methylmalonyl-CoA epimerase compare
ABI39_RS14560 -2.1 -2.7 aspartate 1-decarboxylase compare
ABI39_RS05635 -2.1 -1.4 class I SAM-dependent methyltransferase compare
ABI39_RS00515 -2.1 -2.9 hypothetical protein compare
ABI39_RS03005 -2.0 -6.1 rhamnulose-1-phosphate aldolase compare
ABI39_RS20965 -1.9 -1.7 SPOR domain-containing protein compare
ABI39_RS10650 -1.9 -11.3 AraC family transcriptional regulator compare
ABI39_RS00205 -1.9 -2.5 phosphoglucosamine mutase compare
ABI39_RS21350 -1.9 -2.1 aspartate--ammonia ligase compare
ABI39_RS12725 -1.9 -2.8 acetolactate synthase small subunit compare
ABI39_RS01655 -1.9 -7.5 methylmalonyl-CoA mutase compare
ABI39_RS01300 -1.8 -7.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS11485 -1.8 -2.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS09575 -1.8 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS20395 -1.8 -2.3 DedA family protein compare
ABI39_RS20090 -1.8 -5.2 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS01725 -1.8 -3.9 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS07000 -1.8 -2.7 site-specific tyrosine recombinase XerD compare
ABI39_RS15265 -1.7 -1.6 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS15415 -1.7 -3.6 hypothetical protein compare
ABI39_RS00105 -1.7 -1.4 hypothetical protein compare
ABI39_RS01650 -1.7 -5.5 methylmalonyl-CoA mutase small subunit compare
ABI39_RS17170 -1.7 -1.2 protein BatD compare
ABI39_RS08035 -1.7 -1.2 adenylosuccinate lyase compare
ABI39_RS09040 -1.7 -10.9 MFS transporter compare
ABI39_RS12955 -1.7 -4.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS02755 -1.7 -1.1 glycosyltransferase compare
ABI39_RS06115 -1.7 -6.0 phosphatase PAP2 family protein compare
ABI39_RS09850 -1.6 -2.5 energy transducer TonB compare
ABI39_RS09245 -1.6 -9.4 cardiolipin synthase compare
ABI39_RS07010 -1.6 -1.0 pyruvate kinase compare
ABI39_RS04690 -1.6 -5.6 biosynthetic arginine decarboxylase compare
ABI39_RS02355 -1.6 -4.9 ABC transporter ATP-binding protein compare
ABI39_RS14240 -1.5 -2.8 biotin synthase BioB compare
ABI39_RS12755 -1.5 -1.7 SurA N-terminal domain-containing protein compare
ABI39_RS04930 -1.5 -4.1 helix-turn-helix transcriptional regulator compare
ABI39_RS17140 -1.5 -0.9 AAA family ATPase compare
ABI39_RS16870 -1.5 -1.6 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS02500 -1.5 -6.4 pyridoxine 5'-phosphate synthase compare
ABI39_RS15665 -1.4 -4.4 pyridoxal phosphate-dependent class II aminotransferase compare
ABI39_RS20080 -1.4 -3.8 electron transport complex subunit RsxA compare
ABI39_RS12150 -1.4 -2.5 hotdog fold thioesterase compare
ABI39_RS06925 -1.4 -6.4 glycosyltransferase compare
ABI39_RS07500 -1.4 -1.7 hypothetical protein compare
ABI39_RS14245 -1.4 -8.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS17320 -1.4 -2.6 YhcH/YjgK/YiaL family protein compare
ABI39_RS05280 -1.3 -7.1 S41 family peptidase compare
ABI39_RS20930 -1.3 -8.4 tetratricopeptide repeat protein compare
ABI39_RS06235 -1.3 -6.7 UDP-galactopyranose mutase compare
ABI39_RS08480 -1.3 -1.3 histidine kinase compare
ABI39_RS15320 -1.3 -6.7 PorT family protein compare
ABI39_RS04505 -1.3 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS04675 -1.3 -1.1 hypothetical protein compare
ABI39_RS04885 -1.3 -1.9 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS02350 -1.2 -4.1 ABC transporter permease compare
ABI39_RS03340 -1.2 -2.0 ATP-dependent Clp protease adaptor ClpS compare
ABI39_RS15515 -1.2 -6.6 precorrin-4 C(11)-methyltransferase compare
ABI39_RS16315 -1.2 -1.0 conjugative transposon protein TraK compare
ABI39_RS14250 -1.2 -5.1 8-amino-7-oxononanoate synthase compare
ABI39_RS12805 -1.2 -1.9 hypothetical protein compare
ABI39_RS16895 -1.2 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS19845 -1.2 -1.7 hypothetical protein compare
ABI39_RS18300 -1.2 -3.9 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS22870 -1.2 -3.1 aldo/keto reductase compare
ABI39_RS15175 -1.1 -1.9 hypothetical protein compare
ABI39_RS14255 -1.1 -1.9 DUF452 family protein compare
ABI39_RS11650 -1.1 -4.5 galactokinase compare
ABI39_RS06250 -1.1 -5.5 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS23105 -1.1 -1.5 hypothetical protein compare
ABI39_RS07655 -1.1 -1.0 peptidase M15 compare
ABI39_RS00210 -1.1 -2.6 DUF4827 domain-containing protein compare
ABI39_RS08850 -1.1 -2.5 toprim domain-containing protein compare
ABI39_RS02465 -1.1 -1.6 nucleoside-diphosphate kinase compare
ABI39_RS17745 -1.1 -1.1 sulfur carrier protein ThiS compare
ABI39_RS09515 -1.1 -2.2 nucleoside deaminase compare
ABI39_RS14265 -1.1 -3.6 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS04430 -1.1 -5.0 glycoside hydrolase family 13 protein compare
ABI39_RS17945 -1.1 -5.9 glutamine synthetase III compare
ABI39_RS17335 -1.1 -6.3 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS15845 -1.1 -2.4 hypothetical protein compare
ABI39_RS17640 -1.1 -3.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS16255 -1.0 -1.8 hypothetical protein compare
ABI39_RS09195 -1.0 -1.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS14715 -1.0 -3.4 RidA family protein compare
ABI39_RS03320 -1.0 -6.5 FecR domain-containing protein compare
ABI39_RS16875 -1.0 -1.3 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
ABI39_RS09770 -1.0 -4.0 DUF349 domain-containing protein compare
ABI39_RS20075 -1.0 -3.1 hypothetical protein compare
ABI39_RS04145 -1.0 -1.0 transcription elongation factor GreA compare
ABI39_RS16460 -1.0 -4.5 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABI39_RS18320 -1.0 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source Pectin from apple; autoclaved across organisms