Experiment set2S278 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid (ultrapure); filtered 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABI39_RS22820 +1.7 1.4 hypothetical protein compare
ABI39_RS14060 +1.6 2.0 hypothetical protein compare
ABI39_RS11880 +1.6 1.6 hypothetical protein compare
ABI39_RS08900 +1.4 1.4 hypothetical protein compare
ABI39_RS11140 +1.3 1.6 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS11000 +1.3 1.4 hypothetical protein compare
ABI39_RS11975 +1.3 2.0 polysaccharide export protein compare
ABI39_RS10080 +1.2 8.1 glycoside hydrolase family 28 protein compare
ABI39_RS19200 +1.2 2.7 twin-arginine translocase TatA/TatE family subunit compare
ABI39_RS20175 +1.2 2.2 translation elongation factor 4 compare
ABI39_RS07885 +1.1 8.5 hypothetical protein compare
ABI39_RS18385 +1.1 1.2 helix-turn-helix domain-containing protein compare
ABI39_RS12535 +1.0 1.8 hypothetical protein compare
ABI39_RS09275 +1.0 1.3 thymidine kinase compare
ABI39_RS17610 +1.0 2.3 sensor histidine kinase compare
ABI39_RS16500 +1.0 5.9 redoxin domain-containing protein compare
ABI39_RS22750 +0.9 1.1 hypothetical protein compare
ABI39_RS13160 +0.9 2.6 DUF4847 family protein compare
ABI39_RS13165 +0.9 4.1 M3 family metallopeptidase compare
ABI39_RS02335 +0.9 4.3 trigger factor compare
ABI39_RS16175 +0.9 5.4 macro domain-containing protein compare
ABI39_RS20015 +0.9 4.2 hypothetical protein compare
ABI39_RS16700 +0.8 3.8 agmatine deiminase family protein compare
ABI39_RS13910 +0.8 1.1 chaperone modulator CbpM compare
ABI39_RS08840 +0.8 2.8 conjugative transposon protein TraN compare
ABI39_RS20050 +0.8 3.6 lipocalin-like domain-containing protein compare
ABI39_RS05765 +0.8 1.0 DUF4294 domain-containing protein compare
ABI39_RS20435 +0.8 3.2 chain-length determining protein compare
ABI39_RS20350 +0.8 2.0 nucleotidyltransferase domain-containing protein compare
ABI39_RS18360 +0.8 1.4 helix-turn-helix domain-containing protein compare
ABI39_RS20020 +0.8 4.4 DUF3943 domain-containing protein compare
ABI39_RS07855 +0.7 1.2 helix-turn-helix domain-containing protein compare
ABI39_RS18895 +0.7 3.1 DUF5606 domain-containing protein compare
ABI39_RS19820 +0.7 1.5 hypothetical protein compare
ABI39_RS07325 +0.7 2.2 GNAT family N-acetyltransferase compare
ABI39_RS10715 +0.7 2.4 hypothetical protein compare
ABI39_RS18205 +0.7 2.2 class I SAM-dependent methyltransferase compare
ABI39_RS15655 +0.7 2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABI39_RS22725 +0.7 1.1 hypothetical protein compare
ABI39_RS11170 +0.7 2.2 hypothetical protein compare
ABI39_RS09520 +0.7 2.4 DUF4834 family protein compare
ABI39_RS16655 +0.7 3.7 alpha-1,2-fucosyltransferase compare
ABI39_RS03350 +0.7 2.6 leucyl/phenylalanyl-tRNA--protein transferase compare
ABI39_RS22975 +0.7 1.3 hypothetical protein compare
ABI39_RS16145 +0.7 1.3 DUF2750 domain-containing protein compare
ABI39_RS22925 +0.7 1.1 smalltalk protein compare
ABI39_RS11375 +0.7 2.0 outer membrane beta-barrel protein compare
ABI39_RS16150 +0.7 3.7 hypothetical protein compare
ABI39_RS16760 +0.7 1.4 hypothetical protein compare
ABI39_RS11490 +0.7 0.8 hypothetical protein compare
ABI39_RS06330 +0.7 5.1 ribonuclease III compare
ABI39_RS12650 +0.7 1.7 LemA family protein compare
ABI39_RS16490 +0.6 3.1 DEAD/DEAH box helicase compare
ABI39_RS16575 +0.6 2.1 HlyD family efflux transporter periplasmic adaptor subunit compare
ABI39_RS11270 +0.6 3.6 MBL fold metallo-hydrolase compare
ABI39_RS19870 +0.6 1.0 hypothetical protein compare
ABI39_RS11550 +0.6 4.5 hypothetical protein compare
ABI39_RS08175 +0.6 1.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
ABI39_RS16720 +0.6 3.2 C1 family peptidase compare
ABI39_RS08685 +0.6 1.5 hypothetical protein compare
ABI39_RS12040 +0.6 3.8 YjbH domain-containing protein compare
ABI39_RS15630 +0.6 3.6 sirohydrochlorin cobaltochelatase compare
ABI39_RS06930 +0.6 2.9 glycosyltransferase family 4 protein compare
ABI39_RS15110 +0.6 3.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABI39_RS19585 +0.6 3.5 hypothetical protein compare
ABI39_RS16725 +0.6 2.8 hypothetical protein compare
ABI39_RS07590 +0.6 1.6 site-specific integrase compare
ABI39_RS04675 +0.6 0.9 hypothetical protein compare
ABI39_RS18390 +0.6 0.9 DUF3987 domain-containing protein compare
ABI39_RS11200 +0.6 0.6 helix-turn-helix domain-containing protein compare
ABI39_RS23245 +0.6 1.8 hypothetical protein compare
ABI39_RS14375 +0.6 1.0 DUF4492 domain-containing protein compare
ABI39_RS15260 +0.6 1.2 DUF4286 family protein compare
ABI39_RS17855 +0.6 2.4 glycogen/starch synthase compare
ABI39_RS07515 +0.6 2.4 DNA cytosine methyltransferase compare
ABI39_RS20285 +0.6 2.7 glycosyltransferase compare
ABI39_RS10360 +0.6 2.9 homoserine O-succinyltransferase compare
ABI39_RS01335 +0.6 1.9 hypothetical protein compare
ABI39_RS11695 +0.6 1.9 heavy metal-binding domain-containing protein compare
ABI39_RS12845 +0.6 2.6 hypothetical protein compare
ABI39_RS09900 +0.5 2.7 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS17850 +0.5 2.1 alpha-glucan family phosphorylase compare
ABI39_RS20000 +0.5 2.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABI39_RS22580 +0.5 1.9 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS08655 +0.5 1.5 RNA polymerase sigma-70 factor compare
ABI39_RS20725 +0.5 1.6 HEPN domain-containing protein compare
ABI39_RS14845 +0.5 2.0 hypothetical protein compare
ABI39_RS14215 +0.5 2.5 rhomboid family intramembrane serine protease compare
ABI39_RS19630 +0.5 1.0 hypothetical protein compare
ABI39_RS16630 +0.5 2.7 multidrug effflux MFS transporter compare
ABI39_RS20400 +0.5 1.5 thiol peroxidase compare
ABI39_RS02660 +0.5 3.9 TonB-dependent receptor compare
ABI39_RS20265 +0.5 3.3 WecB/TagA/CpsF family glycosyltransferase compare
ABI39_RS08145 +0.5 0.7 DUF4290 domain-containing protein compare
ABI39_RS04815 +0.5 1.2 response regulator transcription factor compare
ABI39_RS05115 +0.5 2.2 TIGR00730 family Rossman fold protein compare
ABI39_RS05465 +0.5 1.2 chloramphenicol acetyltransferase compare
ABI39_RS15800 +0.5 1.9 hypothetical protein compare
ABI39_RS08810 +0.5 0.7 DUF3876 domain-containing protein compare
ABI39_RS12980 +0.5 1.4 HAD family hydrolase compare
ABI39_RS02155 +0.5 2.3 DUF1566 domain-containing protein compare
ABI39_RS14875 +0.5 1.6 hypothetical protein compare
ABI39_RS21955 +0.5 0.5 DUF4133 domain-containing protein compare
ABI39_RS22520 +0.5 0.6 aldo/keto reductase compare
ABI39_RS13175 +0.5 2.0 MarC family protein compare
ABI39_RS03830 +0.5 0.7 ribosome-associated translation inhibitor RaiA compare
ABI39_RS12905 +0.5 2.3 histidine kinase compare
ABI39_RS06455 +0.5 1.8 hypothetical protein compare
ABI39_RS11125 +0.5 1.9 hypothetical protein compare
ABI39_RS16505 +0.5 3.2 HAD family phosphatase compare
ABI39_RS13405 +0.5 1.3 DUF4248 domain-containing protein compare
ABI39_RS17810 +0.5 2.9 ABC transporter permease compare
ABI39_RS13610 +0.5 2.2 glycosyltransferase family 2 protein compare
ABI39_RS04120 +0.5 1.6 helix-turn-helix domain-containing protein compare
ABI39_RS15360 +0.5 1.7 Na+/H+ antiporter NhaC family protein compare
ABI39_RS08355 +0.5 2.1 PorT family protein compare
ABI39_RS19230 +0.5 2.1 aldo/keto reductase compare
ABI39_RS14835 +0.5 0.7 DNA-binding protein compare
ABI39_RS13630 +0.5 2.5 hypothetical protein compare
ABI39_RS22615 +0.5 0.9 helix-turn-helix domain-containing protein compare
ABI39_RS20710 +0.5 2.5 carboxypeptidase regulatory-like domain-containing protein compare
ABI39_RS01580 +0.5 2.0 peptidase C39 compare
ABI39_RS13995 +0.5 2.2 clostripain compare
ABI39_RS18910 +0.5 0.8 preprotein translocase subunit YajC compare
ABI39_RS11260 +0.4 0.6 DUF4348 domain-containing protein compare
ABI39_RS22145 +0.4 2.0 hypothetical protein compare
ABI39_RS14915 +0.4 2.1 Crp/Fnr family transcriptional regulator compare
ABI39_RS13275 +0.4 2.5 GDP-L-fucose synthase compare
ABI39_RS12035 +0.4 1.3 hypothetical protein compare
ABI39_RS08125 +0.4 1.2 hypothetical protein compare
ABI39_RS16495 +0.4 2.2 phosphoserine phosphatase SerB compare
ABI39_RS15635 +0.4 3.0 TonB-dependent receptor compare
ABI39_RS19470 +0.4 0.8 hypothetical protein compare
ABI39_RS12410 +0.4 2.0 sodium ion-translocating decarboxylase subunit beta compare
ABI39_RS14575 +0.4 1.9 NAD(+) diphosphatase compare
ABI39_RS08315 +0.4 1.5 hypoxanthine phosphoribosyltransferase compare
ABI39_RS06045 +0.4 1.9 DedA family protein compare
ABI39_RS17830 +0.4 1.3 histidine kinase compare
ABI39_RS12055 +0.4 1.6 dTDP-4-dehydrorhamnose reductase compare
ABI39_RS07575 +0.4 1.2 hypothetical protein compare
ABI39_RS18155 +0.4 2.8 bifunctional nuclease family protein compare
ABI39_RS20190 +0.4 1.9 C-GCAxxG-C-C family protein compare
ABI39_RS17360 +0.4 2.4 TolC family protein compare
ABI39_RS22840 +0.4 1.2 right-handed parallel beta-helix repeat-containing protein compare
ABI39_RS02885 +0.4 2.3 Cof-type HAD-IIB family hydrolase compare
ABI39_RS17450 +0.4 2.2 RNA polymerase sigma factor compare
ABI39_RS09975 +0.4 1.9 DUF1295 domain-containing protein compare
ABI39_RS08765 +0.4 2.1 relaxase/mobilization nuclease domain-containing protein compare
ABI39_RS05530 +0.4 1.2 membrane protein insertion efficiency factor YidD compare
ABI39_RS18975 +0.4 1.2 hypothetical protein compare
ABI39_RS17455 +0.4 2.4 trimeric intracellular cation channel family protein compare
ABI39_RS04470 +0.4 1.9 DUF5115 domain-containing protein compare
ABI39_RS11330 +0.4 1.5 hypothetical protein compare
ABI39_RS16165 +0.4 1.5 immunity protein 19 compare
ABI39_RS03590 +0.4 1.7 hypothetical protein compare
ABI39_RS06725 +0.4 1.4 hypothetical protein compare
ABI39_RS20440 +0.4 2.4 SLBB domain-containing protein compare
ABI39_RS11095 +0.4 1.5 MaoC family dehydratase compare
ABI39_RS16155 +0.4 2.0 SMI1/KNR4 family protein compare
ABI39_RS22625 +0.4 0.9 hypothetical protein compare
ABI39_RS19805 +0.4 1.1 hypothetical protein compare
ABI39_RS03410 +0.4 1.9 FecR domain-containing protein compare
ABI39_RS16380 +0.4 0.7 hypothetical protein compare
ABI39_RS02655 +0.4 3.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS04655 +0.4 1.4 membrane protein compare
ABI39_RS04670 +0.4 2.2 DUF2807 domain-containing protein compare
ABI39_RS06440 +0.4 0.5 hypothetical protein compare
ABI39_RS03565 +0.4 0.8 hypothetical protein compare
ABI39_RS00855 +0.4 1.5 FecR family protein compare
ABI39_RS08165 +0.4 0.7 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS16440 +0.4 1.8 DUF1622 domain-containing protein compare
ABI39_RS16205 +0.4 1.7 DUF4948 family protein compare
ABI39_RS01840 +0.4 1.9 hypothetical protein compare
ABI39_RS11815 +0.4 1.6 uridine kinase compare
ABI39_RS19625 +0.4 1.4 hypothetical protein compare
ABI39_RS05450 +0.4 1.3 redox-regulated ATPase YchF compare
ABI39_RS18690 +0.4 2.2 SGNH/GDSL hydrolase family protein compare
ABI39_RS10415 +0.4 0.8 DUF1847 domain-containing protein compare
ABI39_RS11740 +0.4 1.7 ABC transporter ATP-binding protein compare
ABI39_RS22940 +0.4 0.9 hypothetical protein compare
ABI39_RS23220 +0.4 1.3 aldo/keto reductase compare
ABI39_RS20720 +0.4 2.2 DEAD/DEAH box helicase compare
ABI39_RS16540 +0.4 2.2 DMT family transporter compare
ABI39_RS05395 +0.4 2.5 hypothetical protein compare
ABI39_RS01160 +0.4 2.6 alpha-L-fucosidase compare
ABI39_RS13885 +0.4 1.6 helix-turn-helix transcriptional regulator compare
ABI39_RS19350 +0.4 1.3 response regulator transcription factor compare
ABI39_RS09555 +0.4 1.1 immunity 17 family protein compare
ABI39_RS09240 +0.4 2.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABI39_RS17130 +0.4 0.4 HU family DNA-binding protein compare
ABI39_RS16170 +0.4 0.5 hypothetical protein compare
ABI39_RS02375 +0.4 1.6 DUF177 domain-containing protein compare
ABI39_RS02420 +0.4 1.8 transcriptional regulator compare
ABI39_RS03520 +0.4 2.3 creatininase family protein compare
ABI39_RS20335 +0.4 0.9 hypothetical protein compare
ABI39_RS12590 +0.4 2.0 DUF1282 family protein compare
ABI39_RS20300 +0.4 2.4 Gfo/Idh/MocA family oxidoreductase compare
ABI39_RS19430 +0.4 1.6 hypothetical protein compare
ABI39_RS09945 +0.4 1.7 thioesterase family protein compare
ABI39_RS03120 +0.4 1.9 helix-turn-helix domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source polygalacturonic acid (ultrapure); filtered across organisms