Experiment set2S277 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid (ultrapure); filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02975 -7.2 -7.0 argininosuccinate synthase compare
ABI39_RS04685 -7.0 -8.3 acetylglutamate kinase compare
ABI39_RS07790 -6.6 -7.8 M20 family metallo-hydrolase compare
ABI39_RS02980 -6.4 -6.2 N-acetyltransferase compare
ABI39_RS21060 -6.4 -6.2 anthranilate phosphoribosyltransferase compare
ABI39_RS02875 -6.2 -8.5 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS07095 -6.2 -15.9 argininosuccinate lyase compare
ABI39_RS19930 -5.9 -6.9 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10495 -5.8 -6.8 prephenate dehydrogenase compare
ABI39_RS10260 -5.6 -9.3 adenylosuccinate synthase compare
ABI39_RS21075 -5.6 -6.6 tryptophan synthase subunit alpha compare
ABI39_RS04695 -5.6 -7.6 shikimate kinase compare
ABI39_RS10435 -5.5 -9.1 cofactor-independent phosphoglycerate mutase compare
ABI39_RS10440 -5.5 -9.7 threonine synthase compare
ABI39_RS02970 -5.4 -7.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS16910 -5.4 -9.6 3-phosphoglycerate dehydrogenase compare
ABI39_RS12645 -5.3 -14.7 chorismate synthase compare
ABI39_RS02870 -5.2 -9.3 acetylornithine carbamoyltransferase compare
ABI39_RS12665 -5.1 -5.0 shikimate dehydrogenase compare
ABI39_RS02880 -5.0 -11.8 glutamate 5-kinase compare
ABI39_RS10510 -4.9 -10.3 prephenate dehydratase compare
ABI39_RS10505 -4.9 -10.8 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS07005 -4.9 -8.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS21065 -4.8 -8.6 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS00770 -4.8 -14.2 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS16905 -4.8 -11.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS02960 -4.8 -13.5 pyrroline-5-carboxylate reductase compare
ABI39_RS02315 -4.7 -8.5 IMP dehydrogenase compare
ABI39_RS15380 -4.7 -4.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS06055 -4.5 -8.0 phosphoribosylamine--glycine ligase compare
ABI39_RS10430 -4.5 -14.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS15375 -4.4 -10.9 sugar kinase compare
ABI39_RS12720 -4.4 -11.9 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS21050 -4.4 -9.1 anthranilate synthase component I family protein compare
ABI39_RS11830 -4.4 -4.2 ATP phosphoribosyltransferase compare
ABI39_RS00475 -4.2 -6.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS10205 -4.2 -5.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS12715 -4.1 -12.5 dihydroxy-acid dehydratase compare
ABI39_RS19925 -4.0 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10195 -4.0 -11.5 2-isopropylmalate synthase compare
ABI39_RS12675 -3.9 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS11840 -3.9 -3.8 histidinol-phosphate transaminase compare
ABI39_RS11835 -3.9 -5.3 histidinol dehydrogenase compare
ABI39_RS00405 -3.9 -20.6 phosphoribosylformylglycinamidine synthase compare
ABI39_RS06380 -3.9 -9.5 GH3 auxin-responsive promoter family protein compare
ABI39_RS05660 -3.9 -9.4 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS21045 -3.9 -5.2 tryptophan synthase subunit beta compare
ABI39_RS19935 -3.8 -9.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10500 -3.8 -4.4 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS08195 -3.8 -7.0 hypothetical protein compare
ABI39_RS10200 -3.7 -13.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS06670 -3.6 -13.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS12735 -3.6 -9.1 ketol-acid reductoisomerase compare
ABI39_RS06010 -3.6 -9.0 polysaccharide deacetylase family protein compare
ABI39_RS11845 -3.6 -7.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS12770 -3.5 -3.3 hypothetical protein compare
ABI39_RS04245 -3.5 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS10215 -3.5 -13.0 3-isopropylmalate dehydrogenase compare
ABI39_RS10640 -3.4 -12.9 serine dehydratase subunit alpha family protein compare
ABI39_RS11405 -3.3 -11.5 hypothetical protein compare
ABI39_RS14465 -3.3 -9.5 hypothetical protein compare
ABI39_RS19950 -3.3 -2.2 diaminopimelate decarboxylase compare
ABI39_RS17420 -3.3 -9.1 serine hydroxymethyltransferase compare
ABI39_RS04795 -3.3 -2.2 M28 family peptidase compare
ABI39_RS14030 -3.2 -5.0 MFS transporter compare
ABI39_RS06675 -3.1 -8.1 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02965 -3.0 -12.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS05175 -3.0 -6.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS06995 -3.0 -8.2 tetratricopeptide repeat protein compare
ABI39_RS08305 -3.0 -6.6 DUF4831 family protein compare
ABI39_RS04280 -3.0 -5.1 DUF4292 domain-containing protein compare
ABI39_RS01360 -3.0 -6.4 hypothetical protein compare
ABI39_RS19385 -2.9 -3.2 hypothetical protein compare
ABI39_RS10110 -2.9 -11.4 S9 family peptidase compare
ABI39_RS17950 -2.9 -1.9 Crp/Fnr family transcriptional regulator compare
ABI39_RS15475 -2.8 -12.4 glucuronate isomerase compare
ABI39_RS09575 -2.8 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS10210 -2.8 -9.4 2-isopropylmalate synthase compare
ABI39_RS04690 -2.7 -8.7 biosynthetic arginine decarboxylase compare
ABI39_RS15480 -2.7 -7.5 tagaturonate reductase compare
ABI39_RS15365 -2.6 -4.3 altronate dehydratase compare
ABI39_RS09845 -2.6 -1.8 (d)CMP kinase compare
ABI39_RS18330 -2.6 -9.3 PD40 domain-containing protein compare
ABI39_RS15410 -2.6 -7.7 DUF4296 domain-containing protein compare
ABI39_RS09040 -2.5 -14.5 MFS transporter compare
ABI39_RS21350 -2.5 -2.8 aspartate--ammonia ligase compare
ABI39_RS17175 -2.5 -3.6 tetratricopeptide repeat protein compare
ABI39_RS20070 -2.5 -9.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS01415 -2.4 -2.2 branched-chain amino acid aminotransferase compare
ABI39_RS19945 -2.4 -9.4 aspartate kinase compare
ABI39_RS07090 -2.4 -1.6 hypothetical protein compare
ABI39_RS19920 -2.4 -4.1 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS09245 -2.4 -11.6 cardiolipin synthase compare
ABI39_RS20965 -2.3 -2.5 SPOR domain-containing protein compare
ABI39_RS05280 -2.3 -13.0 S41 family peptidase compare
ABI39_RS20095 -2.3 -9.1 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS00205 -2.3 -3.0 phosphoglucosamine mutase compare
ABI39_RS09685 -2.3 -2.0 hypothetical protein compare
ABI39_RS19985 -2.3 -2.4 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20105 -2.2 -5.5 Fe-S cluster domain-containing protein compare
ABI39_RS10870 -2.2 -8.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS18745 -2.2 -2.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS15320 -2.1 -10.6 PorT family protein compare
ABI39_RS20100 -2.0 -8.1 electron transport complex subunit RsxC compare
ABI39_RS12955 -2.0 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS15415 -2.0 -4.7 hypothetical protein compare
ABI39_RS08035 -2.0 -1.4 adenylosuccinate lyase compare
ABI39_RS17170 -2.0 -1.3 protein BatD compare
ABI39_RS10650 -2.0 -12.0 AraC family transcriptional regulator compare
ABI39_RS02755 -1.9 -1.3 glycosyltransferase compare
ABI39_RS01300 -1.9 -10.0 NADP-specific glutamate dehydrogenase compare
ABI39_RS17195 -1.9 -9.3 hypothetical protein compare
ABI39_RS20080 -1.9 -5.7 electron transport complex subunit RsxA compare
ABI39_RS04145 -1.9 -1.2 transcription elongation factor GreA compare
ABI39_RS12755 -1.9 -1.8 SurA N-terminal domain-containing protein compare
ABI39_RS08225 -1.8 -10.1 GH32 C-terminal domain-containing protein compare
ABI39_RS12725 -1.8 -4.0 acetolactate synthase small subunit compare
ABI39_RS18300 -1.8 -6.0 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
ABI39_RS01725 -1.7 -3.8 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS14715 -1.7 -3.7 RidA family protein compare
ABI39_RS00760 -1.7 -2.3 YjgP/YjgQ family permease compare
ABI39_RS20085 -1.7 -5.7 electron transport complex subunit E compare
ABI39_RS08240 -1.7 -11.0 substrate-binding domain-containing protein compare
ABI39_RS17140 -1.7 -1.1 AAA family ATPase compare
ABI39_RS20395 -1.7 -2.6 DedA family protein compare
ABI39_RS04860 -1.6 -1.5 HigA family addiction module antidote protein compare
ABI39_RS22955 -1.6 -3.5 hypothetical protein compare
ABI39_RS02290 -1.6 -3.1 hypothetical protein compare
ABI39_RS14225 -1.6 -7.8 glycosyltransferase compare
ABI39_RS11485 -1.6 -3.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS02140 -1.6 -2.5 TetR/AcrR family transcriptional regulator compare
ABI39_RS07000 -1.6 -2.9 site-specific tyrosine recombinase XerD compare
ABI39_RS04700 -1.6 -3.1 type I DNA topoisomerase compare
ABI39_RS15265 -1.5 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS12415 -1.5 -3.1 biotin/lipoyl-binding protein compare
ABI39_RS14560 -1.5 -2.4 aspartate 1-decarboxylase compare
ABI39_RS20930 -1.5 -10.3 tetratricopeptide repeat protein compare
ABI39_RS20090 -1.5 -4.5 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS04885 -1.4 -2.5 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS09850 -1.4 -2.9 energy transducer TonB compare
ABI39_RS16695 -1.4 -8.2 carbon-nitrogen hydrolase compare
ABI39_RS08220 -1.4 -9.7 TonB-dependent receptor compare
ABI39_RS06115 -1.4 -6.2 phosphatase PAP2 family protein compare
ABI39_RS17730 -1.4 -7.6 carboxynorspermidine decarboxylase compare
ABI39_RS14230 -1.4 -8.9 alpha-amylase compare
ABI39_RS12425 -1.4 -5.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS11940 -1.3 -8.4 saccharopine dehydrogenase family protein compare
ABI39_RS21055 -1.3 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS15735 -1.3 -2.3 hypothetical protein compare
ABI39_RS06990 -1.3 -7.7 DUF4369 domain-containing protein compare
ABI39_RS02060 -1.3 -3.8 translocation/assembly module TamB domain-containing protein compare
ABI39_RS02500 -1.3 -4.9 pyridoxine 5'-phosphate synthase compare
ABI39_RS00515 -1.3 -1.6 hypothetical protein compare
ABI39_RS20410 -1.3 -3.9 GDP-mannose 4,6-dehydratase compare
ABI39_RS09195 -1.2 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS17320 -1.2 -2.8 YhcH/YjgK/YiaL family protein compare
ABI39_RS08185 -1.2 -3.4 hemolysin III family protein compare
ABI39_RS16235 -1.2 -3.1 hypothetical protein compare
ABI39_RS06250 -1.2 -7.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS16885 -1.2 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS22175 -1.2 -1.4 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS01655 -1.2 -5.8 methylmalonyl-CoA mutase compare
ABI39_RS16010 -1.2 -3.9 hypothetical protein compare
ABI39_RS04505 -1.2 -4.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS20860 -1.2 -1.2 HU family DNA-binding protein compare
ABI39_RS02355 -1.2 -4.7 ABC transporter ATP-binding protein compare
ABI39_RS08850 -1.2 -3.1 toprim domain-containing protein compare
ABI39_RS02350 -1.2 -3.3 ABC transporter permease compare
ABI39_RS11545 -1.2 -5.0 hypothetical protein compare
ABI39_RS12670 -1.2 -3.0 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS17315 -1.2 -6.8 alpha amylase C-terminal domain-containing protein compare
ABI39_RS12420 -1.1 -4.0 OadG family protein compare
ABI39_RS13185 -1.1 -1.4 manganese efflux pump compare
ABI39_RS09670 -1.1 -1.8 cardiolipin synthase compare
ABI39_RS15610 -1.1 -1.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS07420 -1.1 -3.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS06925 -1.1 -6.1 glycosyltransferase compare
ABI39_RS18610 -1.1 -2.6 IS66 family insertion sequence element accessory protein TnpB compare
ABI39_RS06920 -1.1 -3.4 glycosyltransferase compare
ABI39_RS12150 -1.1 -2.6 hotdog fold thioesterase compare
ABI39_RS14280 -1.1 -1.4 P-II family nitrogen regulator compare
ABI39_RS02285 -1.1 -1.8 DNA mismatch repair endonuclease MutL compare
ABI39_RS13190 -1.1 -5.5 hypothetical protein compare
ABI39_RS17945 -1.1 -6.6 glutamine synthetase III compare
ABI39_RS12970 -1.0 -4.4 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS16895 -1.0 -1.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS12965 -1.0 -5.0 hypothetical protein compare
ABI39_RS14245 -1.0 -6.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS15920 -1.0 -3.4 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS13845 -1.0 -0.9 histone H1 compare
ABI39_RS19685 -1.0 -2.2 KilA-N domain-containing protein compare
ABI39_RS04970 -1.0 -2.6 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS01735 -1.0 -4.6 acyl-CoA dehydrogenase family protein compare
ABI39_RS06235 -1.0 -4.3 UDP-galactopyranose mutase compare
ABI39_RS11785 -1.0 -3.6 TolC family protein compare
ABI39_RS19845 -1.0 -1.8 hypothetical protein compare
ABI39_RS17205 -1.0 -1.9 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS05635 -1.0 -0.9 class I SAM-dependent methyltransferase compare
ABI39_RS14235 -1.0 -2.5 hypothetical protein compare
ABI39_RS20355 -1.0 -6.8 carboxypeptidase-like regulatory domain-containing protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source polygalacturonic acid (ultrapure); filtered across organisms