Experiment set2S276 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid (ultrapure); autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04695 -5.5 -5.3 shikimate kinase compare
ABI39_RS02875 -5.4 -5.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS12645 -5.3 -8.9 chorismate synthase compare
ABI39_RS19930 -5.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS07790 -5.2 -6.1 M20 family metallo-hydrolase compare
ABI39_RS02980 -5.0 -6.0 N-acetyltransferase compare
ABI39_RS02975 -5.0 -6.8 argininosuccinate synthase compare
ABI39_RS19925 -4.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02880 -4.9 -7.4 glutamate 5-kinase compare
ABI39_RS00475 -4.8 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS04685 -4.8 -6.5 acetylglutamate kinase compare
ABI39_RS02870 -4.7 -5.5 acetylornithine carbamoyltransferase compare
ABI39_RS16905 -4.6 -6.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS15380 -4.6 -3.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS07095 -4.6 -12.8 argininosuccinate lyase compare
ABI39_RS10440 -4.5 -6.8 threonine synthase compare
ABI39_RS21075 -4.4 -4.3 tryptophan synthase subunit alpha compare
ABI39_RS10505 -4.4 -6.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02970 -4.4 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS02960 -4.4 -8.4 pyrroline-5-carboxylate reductase compare
ABI39_RS10435 -4.3 -6.6 cofactor-independent phosphoglycerate mutase compare
ABI39_RS16910 -4.3 -7.2 3-phosphoglycerate dehydrogenase compare
ABI39_RS12665 -4.2 -2.9 shikimate dehydrogenase compare
ABI39_RS12715 -4.2 -7.0 dihydroxy-acid dehydratase compare
ABI39_RS15375 -4.1 -6.2 sugar kinase compare
ABI39_RS21060 -4.1 -6.2 anthranilate phosphoribosyltransferase compare
ABI39_RS06675 -4.1 -5.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS11835 -4.0 -2.7 histidinol dehydrogenase compare
ABI39_RS21065 -3.9 -5.9 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10510 -3.9 -6.9 prephenate dehydratase compare
ABI39_RS21045 -3.9 -2.7 tryptophan synthase subunit beta compare
ABI39_RS12675 -3.8 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS10495 -3.8 -5.2 prephenate dehydrogenase compare
ABI39_RS19935 -3.8 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS02315 -3.8 -5.7 IMP dehydrogenase compare
ABI39_RS07005 -3.8 -3.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS10260 -3.6 -7.3 adenylosuccinate synthase compare
ABI39_RS00770 -3.5 -9.8 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS05660 -3.5 -6.2 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS06055 -3.5 -5.2 phosphoribosylamine--glycine ligase compare
ABI39_RS12735 -3.4 -5.2 ketol-acid reductoisomerase compare
ABI39_RS12720 -3.4 -7.9 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS10195 -3.4 -8.2 2-isopropylmalate synthase compare
ABI39_RS00405 -3.4 -13.8 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10430 -3.4 -9.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS06010 -3.4 -5.9 polysaccharide deacetylase family protein compare
ABI39_RS10500 -3.3 -2.3 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS06380 -3.3 -5.9 GH3 auxin-responsive promoter family protein compare
ABI39_RS02965 -3.3 -8.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10200 -3.3 -10.1 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10205 -3.2 -4.8 3-isopropylmalate dehydratase small subunit compare
ABI39_RS20105 -3.2 -3.7 Fe-S cluster domain-containing protein compare
ABI39_RS14030 -3.2 -3.1 MFS transporter compare
ABI39_RS11840 -3.2 -2.2 histidinol-phosphate transaminase compare
ABI39_RS02125 -3.2 -1.7 hypothetical protein compare
ABI39_RS08195 -3.1 -4.6 hypothetical protein compare
ABI39_RS21050 -3.1 -5.4 anthranilate synthase component I family protein compare
ABI39_RS17420 -3.1 -5.4 serine hydroxymethyltransferase compare
ABI39_RS15410 -3.0 -5.7 DUF4296 domain-containing protein compare
ABI39_RS11845 -3.0 -3.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS11405 -2.9 -7.2 hypothetical protein compare
ABI39_RS15480 -2.9 -4.8 tagaturonate reductase compare
ABI39_RS06995 -2.9 -4.8 tetratricopeptide repeat protein compare
ABI39_RS09245 -2.9 -7.5 cardiolipin synthase compare
ABI39_RS07090 -2.9 -3.1 hypothetical protein compare
ABI39_RS12770 -2.9 -2.0 hypothetical protein compare
ABI39_RS01360 -2.8 -3.3 hypothetical protein compare
ABI39_RS10215 -2.8 -6.7 3-isopropylmalate dehydrogenase compare
ABI39_RS08305 -2.8 -5.2 DUF4831 family protein compare
ABI39_RS06670 -2.8 -8.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS14560 -2.7 -1.8 aspartate 1-decarboxylase compare
ABI39_RS10640 -2.6 -7.9 serine dehydratase subunit alpha family protein compare
ABI39_RS10210 -2.6 -7.6 2-isopropylmalate synthase compare
ABI39_RS04280 -2.5 -2.9 DUF4292 domain-containing protein compare
ABI39_RS20085 -2.5 -4.4 electron transport complex subunit E compare
ABI39_RS11830 -2.5 -2.9 ATP phosphoribosyltransferase compare
ABI39_RS15320 -2.5 -7.4 PorT family protein compare
ABI39_RS03510 -2.5 -2.8 ATP-binding protein compare
ABI39_RS05175 -2.5 -3.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS18330 -2.4 -6.1 PD40 domain-containing protein compare
ABI39_RS15475 -2.4 -7.5 glucuronate isomerase compare
ABI39_RS04795 -2.4 -1.6 M28 family peptidase compare
ABI39_RS13185 -2.4 -1.6 manganese efflux pump compare
ABI39_RS20965 -2.4 -1.6 SPOR domain-containing protein compare
ABI39_RS02285 -2.3 -2.2 DNA mismatch repair endonuclease MutL compare
ABI39_RS01725 -2.3 -3.4 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS23070 -2.3 -1.7 hypothetical protein compare
ABI39_RS19985 -2.3 -1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10110 -2.3 -6.2 S9 family peptidase compare
ABI39_RS05280 -2.2 -9.1 S41 family peptidase compare
ABI39_RS04245 -2.2 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS14465 -2.2 -5.4 hypothetical protein compare
ABI39_RS09040 -2.2 -9.8 MFS transporter compare
ABI39_RS10870 -2.2 -7.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS00205 -2.1 -1.4 phosphoglucosamine mutase compare
ABI39_RS12535 -2.1 -1.6 hypothetical protein compare
ABI39_RS20080 -2.1 -4.1 electron transport complex subunit RsxA compare
ABI39_RS19950 -2.1 -2.0 diaminopimelate decarboxylase compare
ABI39_RS09685 -2.1 -1.4 hypothetical protein compare
ABI39_RS08240 -2.1 -8.7 substrate-binding domain-containing protein compare
ABI39_RS19685 -2.1 -2.0 KilA-N domain-containing protein compare
ABI39_RS10650 -2.0 -10.0 AraC family transcriptional regulator compare
ABI39_RS04690 -2.0 -8.6 biosynthetic arginine decarboxylase compare
ABI39_RS18745 -2.0 -1.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS17950 -2.0 -1.3 Crp/Fnr family transcriptional regulator compare
ABI39_RS15415 -2.0 -2.9 hypothetical protein compare
ABI39_RS09575 -1.9 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS20410 -1.9 -3.3 GDP-mannose 4,6-dehydratase compare
ABI39_RS20095 -1.9 -5.2 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS19945 -1.9 -5.9 aspartate kinase compare
ABI39_RS12150 -1.9 -3.0 hotdog fold thioesterase compare
ABI39_RS12425 -1.9 -4.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS23150 -1.9 -1.4 S26 family signal peptidase compare
ABI39_RS17320 -1.9 -2.4 YhcH/YjgK/YiaL family protein compare
ABI39_RS20090 -1.8 -4.0 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS15610 -1.8 -1.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS20070 -1.8 -5.0 UDP-glucose 4-epimerase GalE compare
ABI39_RS19385 -1.8 -1.7 hypothetical protein compare
ABI39_RS15615 -1.8 -2.7 cysteine-rich CWC family protein compare
ABI39_RS04930 -1.8 -3.7 helix-turn-helix transcriptional regulator compare
ABI39_RS15365 -1.8 -2.7 altronate dehydratase compare
ABI39_RS01415 -1.8 -1.2 branched-chain amino acid aminotransferase compare
ABI39_RS09845 -1.8 -1.2 (d)CMP kinase compare
ABI39_RS19470 -1.8 -1.6 hypothetical protein compare
ABI39_RS08220 -1.8 -8.7 TonB-dependent receptor compare
ABI39_RS16340 -1.8 -2.9 DUF3872 domain-containing protein compare
ABI39_RS07815 -1.8 -3.4 RNA polymerase sigma factor compare
ABI39_RS01735 -1.7 -4.5 acyl-CoA dehydrogenase family protein compare
ABI39_RS21350 -1.7 -1.6 aspartate--ammonia ligase compare
ABI39_RS17195 -1.7 -5.8 hypothetical protein compare
ABI39_RS20930 -1.7 -8.3 tetratricopeptide repeat protein compare
ABI39_RS16320 -1.7 -1.5 DUF3989 domain-containing protein compare
ABI39_RS11545 -1.7 -4.0 hypothetical protein compare
ABI39_RS04285 -1.7 -6.4 tetratricopeptide repeat protein compare
ABI39_RS02355 -1.6 -3.8 ABC transporter ATP-binding protein compare
ABI39_RS16895 -1.6 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS02140 -1.6 -1.8 TetR/AcrR family transcriptional regulator compare
ABI39_RS20215 -1.6 -1.2 DUF4248 domain-containing protein compare
ABI39_RS18070 -1.6 -2.1 DUF3874 domain-containing protein compare
ABI39_RS18965 -1.6 -2.1 site-specific integrase compare
ABI39_RS19920 -1.6 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS22955 -1.6 -2.4 hypothetical protein compare
ABI39_RS20100 -1.6 -4.5 electron transport complex subunit RsxC compare
ABI39_RS08225 -1.5 -7.5 GH32 C-terminal domain-containing protein compare
ABI39_RS11485 -1.5 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS02500 -1.5 -5.2 pyridoxine 5'-phosphate synthase compare
ABI39_RS00760 -1.5 -1.5 YjgP/YjgQ family permease compare
ABI39_RS19400 -1.5 -1.1 helix-turn-helix domain-containing protein compare
ABI39_RS02350 -1.5 -3.6 ABC transporter permease compare
ABI39_RS14995 -1.5 -1.7 F0F1 ATP synthase subunit B compare
ABI39_RS21620 -1.5 -5.8 triose-phosphate isomerase compare
ABI39_RS21055 -1.4 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS07000 -1.4 -1.8 site-specific tyrosine recombinase XerD compare
ABI39_RS17175 -1.4 -2.1 tetratricopeptide repeat protein compare
ABI39_RS01730 -1.4 -3.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
ABI39_RS00515 -1.4 -1.8 hypothetical protein compare
ABI39_RS15920 -1.4 -2.9 type II toxin-antitoxin system HigB family toxin compare
ABI39_RS18615 -1.4 -2.8 hypothetical protein compare
ABI39_RS06990 -1.4 -6.2 DUF4369 domain-containing protein compare
ABI39_RS20110 -1.4 -2.2 SoxR reducing system RseC family protein compare
ABI39_RS04885 -1.4 -0.9 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS16885 -1.4 -1.5 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS08035 -1.4 -0.9 adenylosuccinate lyase compare
ABI39_RS12415 -1.4 -2.0 biotin/lipoyl-binding protein compare
ABI39_RS14250 -1.4 -4.2 8-amino-7-oxononanoate synthase compare
ABI39_RS05655 -1.3 -2.3 hypothetical protein compare
ABI39_RS02755 -1.3 -0.9 glycosyltransferase compare
ABI39_RS12955 -1.3 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS16305 -1.3 -1.0 DUF4141 domain-containing protein compare
ABI39_RS01300 -1.3 -5.9 NADP-specific glutamate dehydrogenase compare
ABI39_RS06115 -1.3 -4.0 phosphatase PAP2 family protein compare
ABI39_RS17170 -1.3 -0.9 protein BatD compare
ABI39_RS09515 -1.3 -2.0 nucleoside deaminase compare
ABI39_RS04145 -1.3 -0.8 transcription elongation factor GreA compare
ABI39_RS04700 -1.3 -1.7 type I DNA topoisomerase compare
ABI39_RS19845 -1.3 -1.4 hypothetical protein compare
ABI39_RS22480 -1.2 -2.4 MGMT family protein compare
ABI39_RS08850 -1.2 -2.1 toprim domain-containing protein compare
ABI39_RS08480 -1.2 -1.1 histidine kinase compare
ABI39_RS14880 -1.2 -1.7 GNAT family N-acetyltransferase compare
ABI39_RS02305 -1.2 -2.6 peptidyl-prolyl cis-trans isomerase compare
ABI39_RS13190 -1.2 -4.7 hypothetical protein compare
ABI39_RS16285 -1.2 -2.0 hypothetical protein compare
ABI39_RS01655 -1.2 -4.8 methylmalonyl-CoA mutase compare
ABI39_RS10415 -1.2 -1.4 DUF1847 domain-containing protein compare
ABI39_RS07010 -1.2 -0.8 pyruvate kinase compare
ABI39_RS06250 -1.2 -5.8 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS12725 -1.2 -3.0 acetolactate synthase small subunit compare
ABI39_RS11860 -1.2 -1.6 NADH peroxidase compare
ABI39_RS16705 -1.2 -7.3 translocation/assembly module TamB compare
ABI39_RS15870 -1.2 -2.8 hypothetical protein compare
ABI39_RS02290 -1.2 -1.7 hypothetical protein compare
ABI39_RS22175 -1.2 -1.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS06235 -1.2 -4.0 UDP-galactopyranose mutase compare
ABI39_RS08785 -1.2 -1.0 DUF3408 domain-containing protein compare
ABI39_RS06920 -1.1 -2.3 glycosyltransferase compare
ABI39_RS03880 -1.1 -5.5 PDZ domain-containing protein compare
ABI39_RS17335 -1.1 -4.6 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS12755 -1.1 -1.1 SurA N-terminal domain-containing protein compare
ABI39_RS14245 -1.1 -5.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source polygalacturonic acid (ultrapure); autoclaved across organisms