Experiment set2S275 for Phocaeicola dorei CL03T12C01

Compare to:

polygalacturonic acid (ultrapure); autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS04685 -6.3 -6.1 acetylglutamate kinase compare
ABI39_RS10495 -5.6 -3.9 prephenate dehydrogenase compare
ABI39_RS04695 -5.6 -5.4 shikimate kinase compare
ABI39_RS02975 -5.5 -7.5 argininosuccinate synthase compare
ABI39_RS02870 -5.5 -5.3 acetylornithine carbamoyltransferase compare
ABI39_RS21075 -5.5 -3.8 tryptophan synthase subunit alpha compare
ABI39_RS21060 -5.3 -5.2 anthranilate phosphoribosyltransferase compare
ABI39_RS19930 -5.3 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS10440 -5.3 -6.3 threonine synthase compare
ABI39_RS10505 -5.1 -6.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS02980 -5.1 -6.0 N-acetyltransferase compare
ABI39_RS07095 -5.0 -12.5 argininosuccinate lyase compare
ABI39_RS02970 -4.9 -4.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS21065 -4.8 -5.7 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS02875 -4.8 -7.3 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS15380 -4.8 -3.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABI39_RS19935 -4.8 -4.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS12645 -4.7 -10.1 chorismate synthase compare
ABI39_RS02960 -4.6 -8.8 pyrroline-5-carboxylate reductase compare
ABI39_RS10435 -4.6 -7.0 cofactor-independent phosphoglycerate mutase compare
ABI39_RS15375 -4.6 -5.4 sugar kinase compare
ABI39_RS00475 -4.5 -6.1 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS00405 -4.5 -15.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS07790 -4.4 -6.1 M20 family metallo-hydrolase compare
ABI39_RS02880 -4.4 -8.4 glutamate 5-kinase compare
ABI39_RS17420 -4.3 -5.1 serine hydroxymethyltransferase compare
ABI39_RS10260 -4.2 -7.0 adenylosuccinate synthase compare
ABI39_RS19925 -4.2 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS06675 -4.2 -5.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS16910 -4.2 -7.5 3-phosphoglycerate dehydrogenase compare
ABI39_RS10215 -4.2 -9.3 3-isopropylmalate dehydrogenase compare
ABI39_RS10430 -4.2 -9.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS07005 -4.2 -5.6 type II 3-dehydroquinate dehydratase compare
ABI39_RS21050 -4.1 -6.2 anthranilate synthase component I family protein compare
ABI39_RS16905 -4.0 -7.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS11405 -4.0 -7.1 hypothetical protein compare
ABI39_RS12720 -4.0 -8.0 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS06380 -3.8 -5.8 GH3 auxin-responsive promoter family protein compare
ABI39_RS12665 -3.8 -4.5 shikimate dehydrogenase compare
ABI39_RS08195 -3.8 -4.4 hypothetical protein compare
ABI39_RS12735 -3.7 -5.6 ketol-acid reductoisomerase compare
ABI39_RS14030 -3.7 -3.6 MFS transporter compare
ABI39_RS10510 -3.7 -8.2 prephenate dehydratase compare
ABI39_RS06670 -3.7 -8.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS08305 -3.7 -5.0 DUF4831 family protein compare
ABI39_RS12715 -3.6 -8.4 dihydroxy-acid dehydratase compare
ABI39_RS11845 -3.5 -2.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS06995 -3.5 -5.7 tetratricopeptide repeat protein compare
ABI39_RS02315 -3.4 -6.5 IMP dehydrogenase compare
ABI39_RS10200 -3.4 -11.0 3-isopropylmalate dehydratase large subunit compare
ABI39_RS10210 -3.4 -8.6 2-isopropylmalate synthase compare
ABI39_RS00770 -3.4 -10.0 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10640 -3.3 -8.7 serine dehydratase subunit alpha family protein compare
ABI39_RS02965 -3.3 -9.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11835 -3.3 -3.2 histidinol dehydrogenase compare
ABI39_RS11840 -3.3 -2.3 histidinol-phosphate transaminase compare
ABI39_RS15410 -3.3 -6.2 DUF4296 domain-containing protein compare
ABI39_RS10195 -3.2 -5.8 2-isopropylmalate synthase compare
ABI39_RS12675 -3.2 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS05660 -3.2 -6.0 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS10500 -3.1 -3.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS10110 -3.1 -6.5 S9 family peptidase compare
ABI39_RS12770 -3.0 -2.1 hypothetical protein compare
ABI39_RS21045 -3.0 -4.0 tryptophan synthase subunit beta compare
ABI39_RS11830 -3.0 -2.9 ATP phosphoribosyltransferase compare
ABI39_RS10205 -2.9 -5.2 3-isopropylmalate dehydratase small subunit compare
ABI39_RS06010 -2.9 -5.8 polysaccharide deacetylase family protein compare
ABI39_RS19385 -2.9 -1.9 hypothetical protein compare
ABI39_RS01360 -2.9 -3.4 hypothetical protein compare
ABI39_RS04280 -2.8 -2.7 DUF4292 domain-containing protein compare
ABI39_RS15475 -2.8 -8.4 glucuronate isomerase compare
ABI39_RS01725 -2.7 -3.5 electron transfer flavoprotein subunit beta/FixA family protein compare
ABI39_RS15775 -2.7 -1.8 hypothetical protein compare
ABI39_RS10870 -2.7 -8.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS18330 -2.6 -6.4 PD40 domain-containing protein compare
ABI39_RS06055 -2.5 -5.6 phosphoribosylamine--glycine ligase compare
ABI39_RS04690 -2.5 -9.1 biosynthetic arginine decarboxylase compare
ABI39_RS13185 -2.5 -1.7 manganese efflux pump compare
ABI39_RS19950 -2.5 -1.7 diaminopimelate decarboxylase compare
ABI39_RS04795 -2.5 -1.6 M28 family peptidase compare
ABI39_RS19945 -2.5 -8.5 aspartate kinase compare
ABI39_RS09245 -2.4 -7.9 cardiolipin synthase compare
ABI39_RS14465 -2.4 -5.7 hypothetical protein compare
ABI39_RS04245 -2.4 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS20090 -2.3 -4.3 RnfABCDGE type electron transport complex subunit G compare
ABI39_RS14560 -2.3 -2.1 aspartate 1-decarboxylase compare
ABI39_RS15480 -2.3 -5.3 tagaturonate reductase compare
ABI39_RS21955 -2.3 -1.2 DUF4133 domain-containing protein compare
ABI39_RS03340 -2.3 -2.1 ATP-dependent Clp protease adaptor ClpS compare
ABI39_RS10650 -2.2 -12.2 AraC family transcriptional regulator compare
ABI39_RS05280 -2.2 -8.6 S41 family peptidase compare
ABI39_RS00205 -2.2 -1.5 phosphoglucosamine mutase compare
ABI39_RS09685 -2.2 -1.5 hypothetical protein compare
ABI39_RS09040 -2.2 -10.5 MFS transporter compare
ABI39_RS07090 -2.1 -1.8 hypothetical protein compare
ABI39_RS17950 -2.1 -1.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS08480 -2.1 -1.6 histidine kinase compare
ABI39_RS20080 -2.1 -4.3 electron transport complex subunit RsxA compare
ABI39_RS05175 -2.0 -4.1 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS08785 -2.0 -1.5 DUF3408 domain-containing protein compare
ABI39_RS18745 -2.0 -1.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS20070 -2.0 -5.6 UDP-glucose 4-epimerase GalE compare
ABI39_RS01415 -1.9 -1.3 branched-chain amino acid aminotransferase compare
ABI39_RS20095 -1.9 -5.7 RnfABCDGE type electron transport complex subunit D compare
ABI39_RS16485 -1.9 -1.7 hypothetical protein compare
ABI39_RS08225 -1.9 -8.8 GH32 C-terminal domain-containing protein compare
ABI39_RS14715 -1.9 -3.4 RidA family protein compare
ABI39_RS15320 -1.8 -7.0 PorT family protein compare
ABI39_RS21350 -1.8 -1.7 aspartate--ammonia ligase compare
ABI39_RS19920 -1.8 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS12955 -1.8 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS19985 -1.8 -1.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS20395 -1.8 -1.7 DedA family protein compare
ABI39_RS15965 -1.8 -2.3 hypothetical protein compare
ABI39_RS09515 -1.8 -2.6 nucleoside deaminase compare
ABI39_RS08240 -1.8 -8.5 substrate-binding domain-containing protein compare
ABI39_RS04700 -1.8 -2.0 type I DNA topoisomerase compare
ABI39_RS06115 -1.8 -4.9 phosphatase PAP2 family protein compare
ABI39_RS17175 -1.7 -2.3 tetratricopeptide repeat protein compare
ABI39_RS02500 -1.7 -6.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS15415 -1.7 -2.8 hypothetical protein compare
ABI39_RS01655 -1.7 -5.7 methylmalonyl-CoA mutase compare
ABI39_RS16895 -1.7 -1.6 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
ABI39_RS15000 -1.7 -1.6 F0F1 ATP synthase subunit delta compare
ABI39_RS00760 -1.7 -1.8 YjgP/YjgQ family permease compare
ABI39_RS12725 -1.7 -3.4 acetolactate synthase small subunit compare
ABI39_RS01300 -1.7 -6.3 NADP-specific glutamate dehydrogenase compare
ABI39_RS09575 -1.7 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS17195 -1.7 -6.1 hypothetical protein compare
ABI39_RS02350 -1.7 -4.1 ABC transporter permease compare
ABI39_RS16385 -1.7 -2.2 hypothetical protein compare
ABI39_RS20930 -1.6 -8.4 tetratricopeptide repeat protein compare
ABI39_RS12425 -1.6 -4.7 acyl-CoA carboxylase subunit beta compare
ABI39_RS06440 -1.5 -1.1 hypothetical protein compare
ABI39_RS18490 -1.5 -1.8 helix-turn-helix domain-containing protein compare
ABI39_RS08850 -1.5 -2.1 toprim domain-containing protein compare
ABI39_RS22820 -1.5 -0.8 hypothetical protein compare
ABI39_RS16305 -1.5 -1.1 DUF4141 domain-containing protein compare
ABI39_RS20085 -1.5 -3.5 electron transport complex subunit E compare
ABI39_RS20410 -1.4 -2.9 GDP-mannose 4,6-dehydratase compare
ABI39_RS17770 -1.4 -2.7 flavodoxin family protein compare
ABI39_RS04885 -1.4 -1.0 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS17205 -1.4 -1.8 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS08035 -1.4 -1.0 adenylosuccinate lyase compare
ABI39_RS12420 -1.4 -3.3 OadG family protein compare
ABI39_RS01735 -1.4 -4.2 acyl-CoA dehydrogenase family protein compare
ABI39_RS12755 -1.4 -1.0 SurA N-terminal domain-containing protein compare
ABI39_RS17745 -1.4 -0.9 sulfur carrier protein ThiS compare
ABI39_RS19845 -1.4 -1.6 hypothetical protein compare
ABI39_RS18205 -1.4 -2.2 class I SAM-dependent methyltransferase compare
ABI39_RS02755 -1.4 -0.9 glycosyltransferase compare
ABI39_RS17640 -1.4 -2.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS22480 -1.4 -2.6 MGMT family protein compare
ABI39_RS08220 -1.4 -7.0 TonB-dependent receptor compare
ABI39_RS06250 -1.4 -6.7 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS02355 -1.4 -3.6 ABC transporter ATP-binding protein compare
ABI39_RS19075 -1.4 -2.1 hypothetical protein compare
ABI39_RS22955 -1.4 -2.4 hypothetical protein compare
ABI39_RS14235 -1.3 -2.5 hypothetical protein compare
ABI39_RS11930 -1.3 -1.9 recombinase RecA compare
ABI39_RS15950 -1.3 -2.6 hypothetical protein compare
ABI39_RS14245 -1.3 -6.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS13720 -1.3 -2.4 PqqD family protein compare
ABI39_RS14280 -1.3 -1.3 P-II family nitrogen regulator compare
ABI39_RS14090 -1.2 -1.5 hypothetical protein compare
ABI39_RS09845 -1.2 -1.4 (d)CMP kinase compare
ABI39_RS07000 -1.2 -1.7 site-specific tyrosine recombinase XerD compare
ABI39_RS22855 -1.2 -1.5 hypothetical protein compare
ABI39_RS04930 -1.2 -2.1 helix-turn-helix transcriptional regulator compare
ABI39_RS09280 -1.2 -1.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABI39_RS17170 -1.2 -1.1 protein BatD compare
ABI39_RS11485 -1.2 -2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS20105 -1.2 -2.6 Fe-S cluster domain-containing protein compare
ABI39_RS15735 -1.2 -1.5 hypothetical protein compare
ABI39_RS01650 -1.2 -4.0 methylmalonyl-CoA mutase small subunit compare
ABI39_RS14230 -1.2 -6.3 alpha-amylase compare
ABI39_RS07420 -1.2 -2.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS06990 -1.2 -6.2 DUF4369 domain-containing protein compare
ABI39_RS15365 -1.1 -2.2 altronate dehydratase compare
ABI39_RS17315 -1.1 -5.3 alpha amylase C-terminal domain-containing protein compare
ABI39_RS00210 -1.1 -1.7 DUF4827 domain-containing protein compare
ABI39_RS16695 -1.1 -5.0 carbon-nitrogen hydrolase compare
ABI39_RS06450 -1.1 -1.9 hydroxymyristoyl-ACP dehydratase compare
ABI39_RS13390 -1.1 -2.1 UpxY family transcription antiterminator compare
ABI39_RS04505 -1.1 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS12970 -1.1 -3.3 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS16620 -1.1 -1.0 phage integrase SAM-like domain-containing protein compare
ABI39_RS02285 -1.1 -1.5 DNA mismatch repair endonuclease MutL compare
ABI39_RS02060 -1.1 -2.2 translocation/assembly module TamB domain-containing protein compare
ABI39_RS14225 -1.1 -4.3 glycosyltransferase compare
ABI39_RS04970 -1.1 -1.8 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS12670 -1.1 -1.9 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS11350 -1.1 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS09850 -1.1 -1.8 energy transducer TonB compare
ABI39_RS17335 -1.1 -5.2 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS14265 -1.1 -3.6 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS23105 -1.1 -1.2 hypothetical protein compare
ABI39_RS20100 -1.1 -3.8 electron transport complex subunit RsxC compare
ABI39_RS19870 -1.1 -1.1 hypothetical protein compare
ABI39_RS02055 -1.1 -1.7 BamA/TamA family outer membrane protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola dorei CL03T12C01 in carbon source experiments

For carbon source polygalacturonic acid (ultrapure); autoclaved across organisms