Experiment set2S274 for Phocaeicola dorei CL03T12C01

Compare to:

b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS02870 -6.4 -4.4 acetylornithine carbamoyltransferase compare
ABI39_RS02975 -6.2 -6.1 argininosuccinate synthase compare
ABI39_RS02980 -6.1 -4.2 N-acetyltransferase compare
ABI39_RS04695 -5.8 -5.6 shikimate kinase compare
ABI39_RS07095 -5.8 -10.4 argininosuccinate lyase compare
ABI39_RS06000 -5.7 -6.7 beta-glucosidase BglX compare
ABI39_RS07005 -5.6 -5.5 type II 3-dehydroquinate dehydratase compare
ABI39_RS05990 -5.6 -9.3 TonB-dependent receptor compare
ABI39_RS21060 -5.6 -5.4 anthranilate phosphoribosyltransferase compare
ABI39_RS07790 -5.4 -6.4 M20 family metallo-hydrolase compare
ABI39_RS07090 -5.4 -5.9 hypothetical protein compare
ABI39_RS02970 -5.0 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10440 -5.0 -6.8 threonine synthase compare
ABI39_RS16905 -5.0 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS16910 -4.9 -6.7 3-phosphoglycerate dehydrogenase compare
ABI39_RS10205 -4.8 -5.7 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02875 -4.8 -7.9 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS21065 -4.7 -6.4 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS10430 -4.6 -9.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS06670 -4.6 -8.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS05995 -4.6 -6.3 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS12645 -4.5 -11.7 chorismate synthase compare
ABI39_RS10495 -4.5 -6.1 prephenate dehydrogenase compare
ABI39_RS10435 -4.5 -7.5 cofactor-independent phosphoglycerate mutase compare
ABI39_RS00405 -4.5 -15.2 phosphoribosylformylglycinamidine synthase compare
ABI39_RS10215 -4.4 -9.4 3-isopropylmalate dehydrogenase compare
ABI39_RS02315 -4.4 -5.3 IMP dehydrogenase compare
ABI39_RS02880 -4.4 -9.4 glutamate 5-kinase compare
ABI39_RS10200 -4.4 -9.8 3-isopropylmalate dehydratase large subunit compare
ABI39_RS19930 -4.4 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04685 -4.4 -5.7 acetylglutamate kinase compare
ABI39_RS10260 -4.4 -7.8 adenylosuccinate synthase compare
ABI39_RS06055 -4.4 -5.2 phosphoribosylamine--glycine ligase compare
ABI39_RS02960 -4.3 -10.4 pyrroline-5-carboxylate reductase compare
ABI39_RS12735 -4.3 -4.2 ketol-acid reductoisomerase compare
ABI39_RS00770 -4.2 -10.5 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10510 -4.2 -7.4 prephenate dehydratase compare
ABI39_RS12715 -4.1 -8.3 dihydroxy-acid dehydratase compare
ABI39_RS19925 -4.1 -5.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS10870 -4.0 -10.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS01300 -3.9 -9.8 NADP-specific glutamate dehydrogenase compare
ABI39_RS10640 -3.8 -9.0 serine dehydratase subunit alpha family protein compare
ABI39_RS12665 -3.7 -5.0 shikimate dehydrogenase compare
ABI39_RS10195 -3.7 -7.2 2-isopropylmalate synthase compare
ABI39_RS11845 -3.6 -3.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS21045 -3.6 -3.5 tryptophan synthase subunit beta compare
ABI39_RS21075 -3.6 -6.3 tryptophan synthase subunit alpha compare
ABI39_RS09650 -3.5 -10.5 AraC family transcriptional regulator compare
ABI39_RS11835 -3.5 -3.4 histidinol dehydrogenase compare
ABI39_RS19935 -3.4 -7.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS05660 -3.4 -6.7 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS19020 -3.4 -18.0 response regulator compare
ABI39_RS17420 -3.4 -6.3 serine hydroxymethyltransferase compare
ABI39_RS12720 -3.3 -9.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS21050 -3.2 -5.4 anthranilate synthase component I family protein compare
ABI39_RS11830 -3.2 -3.1 ATP phosphoribosyltransferase compare
ABI39_RS05450 -3.2 -3.0 redox-regulated ATPase YchF compare
ABI39_RS12770 -3.1 -2.1 hypothetical protein compare
ABI39_RS10505 -3.1 -8.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS11840 -3.1 -3.0 histidinol-phosphate transaminase compare
ABI39_RS10500 -3.0 -3.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS14560 -3.0 -2.0 aspartate 1-decarboxylase compare
ABI39_RS19385 -3.0 -2.0 hypothetical protein compare
ABI39_RS10210 -2.9 -9.1 2-isopropylmalate synthase compare
ABI39_RS12675 -2.9 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS02290 -2.9 -2.7 hypothetical protein compare
ABI39_RS06675 -2.9 -6.2 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS02965 -2.8 -9.7 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS04280 -2.8 -3.3 DUF4292 domain-containing protein compare
ABI39_RS00475 -2.8 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS00040 -2.7 -6.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
ABI39_RS16700 -2.7 -3.2 agmatine deiminase family protein compare
ABI39_RS04245 -2.6 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
ABI39_RS04795 -2.6 -1.7 M28 family peptidase compare
ABI39_RS12725 -2.6 -3.6 acetolactate synthase small subunit compare
ABI39_RS12955 -2.6 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS07815 -2.5 -1.6 RNA polymerase sigma factor compare
ABI39_RS14715 -2.5 -4.6 RidA family protein compare
ABI39_RS19920 -2.5 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS10650 -2.5 -14.4 AraC family transcriptional regulator compare
ABI39_RS09850 -2.3 -1.6 energy transducer TonB compare
ABI39_RS04700 -2.3 -1.6 type I DNA topoisomerase compare
ABI39_RS16885 -2.3 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS04690 -2.3 -8.3 biosynthetic arginine decarboxylase compare
ABI39_RS04860 -2.3 -2.4 HigA family addiction module antidote protein compare
ABI39_RS09685 -2.3 -1.5 hypothetical protein compare
ABI39_RS08770 -2.3 -2.5 hypothetical protein compare
ABI39_RS02500 -2.3 -5.0 pyridoxine 5'-phosphate synthase compare
ABI39_RS11940 -2.3 -9.3 saccharopine dehydrogenase family protein compare
ABI39_RS17640 -2.3 -3.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS14875 -2.2 -2.9 hypothetical protein compare
ABI39_RS19950 -2.2 -2.1 diaminopimelate decarboxylase compare
ABI39_RS21350 -2.2 -1.5 aspartate--ammonia ligase compare
ABI39_RS08165 -2.2 -1.9 1-deoxy-D-xylulose-5-phosphate reductoisomerase compare
ABI39_RS17950 -2.2 -1.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS09575 -2.1 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABI39_RS06250 -2.1 -7.6 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS05175 -2.1 -4.6 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS15400 -2.0 -6.1 TraR/DksA C4-type zinc finger protein compare
ABI39_RS01415 -2.0 -1.3 branched-chain amino acid aminotransferase compare
ABI39_RS17450 -1.9 -6.2 RNA polymerase sigma factor compare
ABI39_RS06245 -1.9 -1.7 glycosyltransferase family 9 protein compare
ABI39_RS08555 -1.9 -3.9 Trk system potassium transporter TrkA compare
ABI39_RS09515 -1.9 -2.4 nucleoside deaminase compare
ABI39_RS00205 -1.8 -1.8 phosphoglucosamine mutase compare
ABI39_RS17730 -1.8 -6.7 carboxynorspermidine decarboxylase compare
ABI39_RS04970 -1.8 -2.1 Holliday junction branch migration DNA helicase RuvB compare
ABI39_RS07820 -1.7 -4.7 VanZ family protein compare
ABI39_RS20915 -1.7 -1.7 50S ribosomal protein L35 compare
ABI39_RS06380 -1.7 -5.4 GH3 auxin-responsive promoter family protein compare
ABI39_RS15410 -1.7 -5.2 DUF4296 domain-containing protein compare
ABI39_RS16305 -1.7 -1.1 DUF4141 domain-containing protein compare
ABI39_RS09195 -1.6 -3.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABI39_RS09230 -1.6 -1.5 hypothetical protein compare
ABI39_RS16695 -1.6 -6.8 carbon-nitrogen hydrolase compare
ABI39_RS02465 -1.6 -1.7 nucleoside-diphosphate kinase compare
ABI39_RS09340 -1.5 -6.1 site-specific integrase compare
ABI39_RS00240 -1.5 -2.9 NigD-like N-terminal domain-containing protein compare
ABI39_RS07910 -1.5 -6.4 thiamine-phosphate kinase compare
ABI39_RS06010 -1.5 -4.8 polysaccharide deacetylase family protein compare
ABI39_RS18745 -1.5 -2.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
ABI39_RS22930 -1.4 -2.4 hypothetical protein compare
ABI39_RS10635 -1.4 -3.4 N-acetyltransferase compare
ABI39_RS01360 -1.4 -3.8 hypothetical protein compare
ABI39_RS02755 -1.4 -1.0 glycosyltransferase compare
ABI39_RS14145 -1.4 -2.0 diacylglycerol kinase family protein compare
ABI39_RS04885 -1.4 -1.3 calcium-translocating P-type ATPase, PMCA-type compare
ABI39_RS17170 -1.4 -0.9 protein BatD compare
ABI39_RS15265 -1.4 -1.3 crossover junction endodeoxyribonuclease RuvC compare
ABI39_RS00755 -1.4 -6.6 hypothetical protein compare
ABI39_RS19580 -1.4 -3.1 hypothetical protein compare
ABI39_RS12690 -1.4 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
ABI39_RS08035 -1.3 -1.3 adenylosuccinate lyase compare
ABI39_RS18965 -1.3 -2.0 site-specific integrase compare
ABI39_RS07010 -1.3 -0.9 pyruvate kinase compare
ABI39_RS16620 -1.3 -1.1 phage integrase SAM-like domain-containing protein compare
ABI39_RS19945 -1.3 -5.7 aspartate kinase compare
ABI39_RS20965 -1.3 -1.4 SPOR domain-containing protein compare
ABI39_RS17195 -1.3 -5.6 hypothetical protein compare
ABI39_RS12055 -1.3 -3.6 dTDP-4-dehydrorhamnose reductase compare
ABI39_RS21055 -1.3 -2.8 aminodeoxychorismate/anthranilate synthase component II compare
ABI39_RS19665 -1.3 -2.2 hypothetical protein compare
ABI39_RS18330 -1.3 -4.8 PD40 domain-containing protein compare
ABI39_RS07000 -1.3 -1.8 site-specific tyrosine recombinase XerD compare
ABI39_RS00090 -1.3 -2.0 HAMP domain-containing histidine kinase compare
ABI39_RS16880 -1.2 -1.4 Na(+)-translocating NADH-quinone reductase subunit C compare
ABI39_RS12125 -1.2 -2.1 o-succinylbenzoate synthase compare
ABI39_RS09245 -1.2 -4.6 cardiolipin synthase compare
ABI39_RS16490 -1.2 -3.8 DEAD/DEAH box helicase compare
ABI39_RS17945 -1.2 -6.0 glutamine synthetase III compare
ABI39_RS11875 -1.2 -2.9 OmpH family outer membrane protein compare
ABI39_RS19540 -1.2 -2.6 hypothetical protein compare
ABI39_RS10325 -1.2 -4.1 ABC-F family ATP-binding cassette domain-containing protein compare
ABI39_RS15855 -1.2 -1.9 helix-turn-helix transcriptional regulator compare
ABI39_RS07655 -1.2 -0.9 peptidase M15 compare
ABI39_RS12670 -1.1 -2.2 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
ABI39_RS17140 -1.1 -0.7 AAA family ATPase compare
ABI39_RS22175 -1.1 -1.0 N-acetylmuramoyl-L-alanine amidase compare
ABI39_RS23050 -1.1 -1.9 hypothetical protein compare
ABI39_RS06440 -1.1 -0.9 hypothetical protein compare
ABI39_RS04505 -1.1 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS18860 -1.1 -2.8 hypothetical protein compare
ABI39_RS00415 -1.1 -4.7 chromate transporter compare
ABI39_RS14150 -1.1 -6.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABI39_RS16870 -1.1 -1.2 Na(+)-translocating NADH-quinone reductase subunit A compare
ABI39_RS00250 -1.1 -1.4 chloride channel protein compare
ABI39_RS19550 -1.1 -3.0 hypothetical protein compare
ABI39_RS14230 -1.1 -4.8 alpha-amylase compare
ABI39_RS02335 -1.1 -4.1 trigger factor compare
ABI39_RS15415 -1.1 -2.2 hypothetical protein compare
ABI39_RS09285 -1.1 -1.0 hypothetical protein compare
ABI39_RS03625 -1.1 -2.7 type I methionyl aminopeptidase compare
ABI39_RS06995 -1.1 -3.8 tetratricopeptide repeat protein compare
ABI39_RS18355 -1.1 -5.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABI39_RS05405 -1.0 -4.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABI39_RS05550 -1.0 -1.1 TIGR00730 family Rossman fold protein compare
ABI39_RS08195 -1.0 -2.9 hypothetical protein compare
ABI39_RS08765 -1.0 -2.8 relaxase/mobilization nuclease domain-containing protein compare
ABI39_RS06785 -1.0 -2.7 helix-turn-helix transcriptional regulator compare
ABI39_RS12755 -1.0 -1.4 SurA N-terminal domain-containing protein compare
ABI39_RS02470 -1.0 -1.7 ATP-dependent DNA helicase RecG compare
ABI39_RS00050 -1.0 -1.9 hypothetical protein compare
ABI39_RS14265 -1.0 -3.6 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS00210 -1.0 -2.0 DUF4827 domain-containing protein compare
ABI39_RS11525 -1.0 -1.4 HU family DNA-binding protein compare
ABI39_RS17245 -1.0 -1.8 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
ABI39_RS14235 -1.0 -2.1 hypothetical protein compare
ABI39_RS15975 -1.0 -1.8 hypothetical protein compare
ABI39_RS16255 -1.0 -1.6 hypothetical protein compare
ABI39_RS14240 -1.0 -2.0 biotin synthase BioB compare
ABI39_RS03545 -1.0 -2.4 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
ABI39_RS06065 -1.0 -2.4 RNA methyltransferase compare
ABI39_RS04865 -1.0 -1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
ABI39_RS10535 -1.0 -3.8 tetratricopeptide repeat protein compare
ABI39_RS06130 -0.9 -4.7 U32 family peptidase compare
ABI39_RS08510 -0.9 -1.8 NADH-quinone oxidoreductase subunit NuoK compare
ABI39_RS16430 -0.9 -1.7 site-specific integrase compare
ABI39_RS16235 -0.9 -1.9 hypothetical protein compare
ABI39_RS17205 -0.9 -1.4 ATP-dependent Clp protease ATP-binding subunit compare
ABI39_RS19815 -0.9 -1.4 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source b-Glucan from Beet (1,2-b-Glucan); filtered in Phocaeicola dorei CL03T12C01

For carbon source b-Glucan from Beet (1,2-b-Glucan); filtered across organisms