Experiment set2S27 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Thymine 0.793 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS01590 -2.0 -3.0 site-specific DNA-methyltransferase compare
A4249_RS06230 -1.8 -2.8 OmpH family outer membrane protein compare
A4249_RS06525 -1.5 -1.9 SCP2 sterol-binding domain-containing protein compare
A4249_RS13560 -1.2 -2.3 glutaredoxin 3 compare
A4249_RS11125 -1.2 -9.7 glycosyltransferase family 9 protein compare
A4249_RS16585 -1.2 -1.8 hypothetical protein compare
A4249_RS10360 -1.0 -1.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS05960 -1.0 -1.7 MerR family transcriptional regulator compare
A4249_RS00290 -0.9 -1.6 histidine phosphatase family protein compare
A4249_RS04080 -0.9 -3.1 M48 family metalloprotease compare
A4249_RS13760 -0.9 -1.9 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS05620 -0.9 -4.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS04475 -0.9 -1.9 response regulator transcription factor compare
A4249_RS06665 -0.9 -1.8 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS02645 -0.9 -1.3 cobalamin biosynthesis protein CbiG compare
A4249_RS09330 -0.8 -1.2 glycine cleavage system protein GcvH compare
A4249_RS05625 -0.8 -6.5 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS10430 -0.7 -3.8 S1/P1 Nuclease compare
A4249_RS16085 -0.7 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS00270 -0.7 -1.6 very short patch repair endonuclease compare
A4249_RS01610 -0.7 -1.2 TetR/AcrR family transcriptional regulator compare
A4249_RS12260 -0.7 -1.8 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS07995 -0.7 -1.3 type II 3-dehydroquinate dehydratase compare
A4249_RS13060 -0.7 -5.7 AGE family epimerase/isomerase compare
A4249_RS15865 -0.7 -1.3 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS04635 -0.6 -5.6 cyclic nucleotide-binding domain-containing protein compare
A4249_RS12980 -0.6 -5.5 GDP-mannose 4,6-dehydratase compare
A4249_RS09255 -0.6 -0.5 phosphoribosylamine--glycine ligase compare
A4249_RS13070 -0.6 -5.0 phosphomannomutase/phosphoglucomutase compare
A4249_RS11805 -0.6 -1.1 SOS response-associated peptidase compare
A4249_RS13025 -0.6 -4.9 hypothetical protein compare
A4249_RS08685 -0.6 -2.2 hypothetical protein compare
A4249_RS16455 -0.6 -1.1 helix-turn-helix transcriptional regulator compare
A4249_RS14695 -0.6 -3.1 transcription elongation factor GreA compare
A4249_RS13535 -0.6 -2.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
A4249_RS01670 -0.5 -2.9 excinuclease ABC subunit UvrC compare
A4249_RS01460 -0.5 -1.1 signal peptide peptidase SppA compare
A4249_RS00100 -0.5 -1.3 PadR family transcriptional regulator compare
A4249_RS13030 -0.5 -4.0 glycosyltransferase family 1 protein compare
A4249_RS00265 -0.5 -1.3 peroxiredoxin compare
A4249_RS11290 -0.5 -1.7 double-strand break repair helicase AddA compare
A4249_RS01215 -0.5 -2.1 hypothetical protein compare
A4249_RS13450 -0.5 -1.4 PilZ domain-containing protein compare
A4249_RS12400 -0.5 -0.8 hypothetical protein compare
A4249_RS04615 -0.5 -3.0 DEAD/DEAH box helicase compare
A4249_RS15285 -0.5 -2.3 hypothetical protein compare
A4249_RS08535 -0.5 -1.1 flagellar assembly protein FliX compare
A4249_RS13020 -0.5 -3.2 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS12470 -0.5 -0.9 histidinol-phosphatase compare
A4249_RS01230 -0.5 -1.4 hypothetical protein compare
A4249_RS07910 -0.5 -0.8 2-hydroxyacid dehydrogenase compare
A4249_RS04450 -0.5 -1.5 cytochrome o ubiquinol oxidase subunit I compare
A4249_RS09275 -0.5 -2.2 DUF3035 domain-containing protein compare
A4249_RS11150 -0.5 -2.7 capsular biosynthesis protein compare
A4249_RS15595 -0.5 -2.1 hypothetical protein compare
A4249_RS07290 -0.5 -1.4 ribonuclease E/G compare
A4249_RS08855 -0.4 -1.5 L,D-transpeptidase family protein compare
A4249_RS08510 -0.4 -1.6 hypothetical protein compare
A4249_RS15980 -0.4 -2.2 multidrug efflux SMR transporter compare
A4249_RS12085 -0.4 -1.3 DUF883 family protein compare
A4249_RS09285 -0.4 -2.0 Tat pathway signal sequence domain protein compare
A4249_RS13045 -0.4 -3.6 glycosyltransferase family 1 protein compare
A4249_RS01010 -0.4 -2.9 capsular polysaccharide biosynthesis protein compare
A4249_RS04995 -0.4 -1.5 DUF2171 domain-containing protein compare
A4249_RS10990 -0.4 -1.1 ATP-dependent protease ATPase subunit HslU compare
A4249_RS13175 -0.4 -0.8 Rrf2 family transcriptional regulator compare
A4249_RS11365 -0.4 -1.1 cation diffusion facilitator family transporter compare
A4249_RS12795 -0.4 -0.8 DsbE family thiol:disulfide interchange protein compare
A4249_RS02395 -0.4 -1.5 FecR domain-containing protein compare
A4249_RS01905 -0.4 -0.7 TrbC/VirB2 family protein compare
A4249_RS11285 -0.4 -1.1 double-strand break repair protein AddB compare
A4249_RS07050 -0.4 -0.8 hypothetical protein compare
A4249_RS05900 -0.4 -1.2 hypothetical protein compare
A4249_RS10460 -0.4 -3.5 ATP-binding protein compare
A4249_RS14840 -0.4 -1.8 carboxynorspermidine decarboxylase compare
A4249_RS14895 -0.4 -1.2 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS13195 -0.4 -1.8 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS14445 -0.4 -1.0 hypothetical protein compare
A4249_RS07020 -0.4 -0.7 hypothetical protein compare
A4249_RS01325 -0.4 -1.1 hypothetical protein compare
A4249_RS09350 -0.4 -0.8 PGPGW domain-containing protein compare
A4249_RS01075 -0.4 -1.7 DNA-binding domain-containing protein compare
A4249_RS14380 -0.4 -2.1 YnbE family lipoprotein compare
A4249_RS07145 -0.4 -0.9 hypothetical protein compare
A4249_RS05590 -0.4 -1.3 amino acid ABC transporter substrate-binding protein compare
A4249_RS10935 -0.4 -2.0 hypothetical protein compare
A4249_RS05845 -0.4 -1.2 sigma-70 family RNA polymerase sigma factor compare
A4249_RS06580 -0.4 -1.6 HWE histidine kinase domain-containing protein compare
A4249_RS13495 -0.4 -1.5 organic hydroperoxide resistance protein compare
A4249_RS08725 -0.4 -1.4 hypothetical protein compare
A4249_RS02635 -0.4 -0.9 RNA polymerase sigma factor compare
A4249_RS08730 -0.4 -2.9 hypothetical protein compare
A4249_RS00895 -0.4 -0.9 DUF1476 domain-containing protein compare
A4249_RS00305 -0.4 -1.1 DUF4908 domain-containing protein compare
A4249_RS13805 -0.4 -0.6 HAD family hydrolase compare
A4249_RS13035 -0.4 -2.3 hypothetical protein compare
A4249_RS01090 -0.4 -0.9 sigma-70 family RNA polymerase sigma factor compare
A4249_RS12455 -0.3 -1.3 hypothetical protein compare
A4249_RS03600 -0.3 -1.9 LacI family DNA-binding transcriptional regulator compare
A4249_RS01615 -0.3 -1.4 GNAT family N-acetyltransferase compare
A4249_RS10100 -0.3 -1.7 DUF2163 domain-containing protein compare
A4249_RS08885 -0.3 -1.0 DUF465 domain-containing protein compare
A4249_RS10095 -0.3 -0.4 NlpC/P60 family protein compare
A4249_RS06990 -0.3 -1.9 MT-A70 family methyltransferase compare
A4249_RS11755 -0.3 -1.3 efflux RND transporter periplasmic adaptor subunit compare
A4249_RS14875 -0.3 -1.2 benzoate/H(+) symporter BenE family transporter compare
A4249_RS00700 -0.3 -1.4 hypothetical protein compare
A4249_RS08805 -0.3 -2.4 HAMP domain-containing sensor histidine kinase compare
A4249_RS02685 -0.3 -1.7 CoA pyrophosphatase compare
A4249_RS03590 -0.3 -3.0 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS15485 -0.3 -1.6 biliverdin-producing heme oxygenase compare
A4249_RS07200 -0.3 -1.3 hypothetical protein compare
A4249_RS04045 -0.3 -1.6 GNAT family N-acetyltransferase compare
A4249_RS13190 -0.3 -1.3 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS11505 -0.3 -1.5 TlpA disulfide reductase family protein compare
A4249_RS08705 -0.3 -1.8 response regulator compare
A4249_RS12305 -0.3 -1.6 glycosyltransferase family 1 protein compare
A4249_RS13125 -0.3 -1.2 ribonuclease PH compare
A4249_RS03175 -0.3 -1.3 ParB N-terminal domain-containing protein compare
A4249_RS11575 -0.3 -1.0 YeeE/YedE family protein compare
A4249_RS11740 -0.3 -1.8 isoprenylcysteine carboxylmethyltransferase family protein compare
A4249_RS03020 -0.3 -1.9 DUF2061 domain-containing protein compare
A4249_RS14780 -0.3 -2.1 NepR family anti-sigma factor compare
A4249_RS05075 -0.3 -2.1 DUF924 family protein compare
A4249_RS14905 -0.3 -0.7 phosphonate ABC transporter ATP-binding protein compare
A4249_RS07205 -0.3 -2.3 hypothetical protein compare
A4249_RS00930 -0.3 -1.9 glutathione S-transferase family protein compare
A4249_RS07165 -0.3 -2.7 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS07150 -0.3 -2.4 hypothetical protein compare
A4249_RS08355 -0.3 -2.4 response regulator compare
A4249_RS00860 -0.3 -0.9 hypothetical protein compare
A4249_RS11435 -0.3 -3.0 YdcF family protein compare
A4249_RS13590 -0.3 -1.9 [protein-PII] uridylyltransferase compare
A4249_RS03115 -0.3 -0.6 signal peptidase II compare
A4249_RS02530 -0.3 -2.1 GMP synthase compare
A4249_RS07105 -0.3 -0.8 hypothetical protein compare
A4249_RS06690 -0.3 -0.8 DUF423 domain-containing protein compare
A4249_RS01275 -0.3 -1.2 hypothetical protein compare
A4249_RS08820 -0.3 -1.7 bacterioferritin compare
A4249_RS14900 -0.3 -1.7 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS15560 -0.3 -0.9 response regulator compare
A4249_RS11680 -0.3 -0.9 7-cyano-7-deazaguanine synthase compare
A4249_RS07170 -0.3 -1.4 hypothetical protein compare
A4249_RS12390 -0.3 -1.2 ATP-dependent protease subunit HslV compare
A4249_RS02565 -0.3 -2.4 cytochrome b N-terminal domain-containing protein compare
A4249_RS00975 -0.3 -1.7 DUF559 domain-containing protein compare
A4249_RS07895 -0.3 -0.9 VOC family protein compare
A4249_RS08865 -0.3 -0.9 DUF1192 domain-containing protein compare
A4249_RS06875 -0.3 -1.9 hypothetical protein compare
A4249_RS07090 -0.3 -1.6 hypothetical protein compare
A4249_RS10115 -0.3 -1.1 phage tail tape measure protein compare
A4249_RS12295 -0.3 -0.8 trehalose-phosphatase compare
A4249_RS09605 -0.3 -0.7 DUF6468 domain-containing protein compare
A4249_RS17075 -0.3 -0.4 energy transducer TonB compare
A4249_RS02570 -0.3 -2.1 cytochrome c1 compare
A4249_RS05390 -0.3 -1.1 SOS response-associated peptidase family protein compare
A4249_RS15180 -0.3 -1.3 hypothetical protein compare
A4249_RS03440 -0.3 -1.0 hypothetical protein compare
A4249_RS11525 -0.3 -1.5 DsrE family protein compare
A4249_RS11760 -0.3 -1.5 TolC family protein compare
A4249_RS14565 -0.3 -1.2 DUF488 domain-containing protein compare
A4249_RS02540 -0.3 -2.0 LysR family transcriptional regulator compare
A4249_RS09520 -0.3 -1.9 DNA adenine methylase compare
A4249_RS14865 -0.3 -1.9 glutathione S-transferase N-terminal domain-containing protein compare
A4249_RS06550 -0.3 -0.9 chorismate mutase compare
A4249_RS12025 -0.3 -1.6 Flp pilus assembly protein CpaB compare
A4249_RS10630 -0.3 -1.3 FAD:protein FMN transferase compare
A4249_RS00925 -0.3 -0.7 multidrug efflux SMR transporter compare
A4249_RS07985 -0.3 -1.1 type II toxin-antitoxin system VapC family toxin compare
A4249_RS07480 -0.2 -1.6 hypothetical protein compare
A4249_RS10550 -0.2 -0.6 winged helix-turn-helix transcriptional regulator compare
A4249_RS05915 -0.2 -1.8 peptide-methionine (R)-S-oxide reductase MsrB compare
A4249_RS09830 -0.2 -1.2 ATP-binding protein compare
A4249_RS08145 -0.2 -1.4 NAD(P)H-binding protein compare
A4249_RS04510 -0.2 -1.1 polymer-forming cytoskeletal protein compare
A4249_RS07920 -0.2 -1.1 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS16940 -0.2 -1.0 GIY-YIG nuclease family protein compare
A4249_RS12970 -0.2 -0.8 glycosyltransferase family 61 protein compare
A4249_RS09880 -0.2 -2.2 TonB-dependent receptor compare
A4249_RS06985 -0.2 -0.4 hypothetical protein compare
A4249_RS08375 -0.2 -0.6 hypothetical protein compare
A4249_RS12660 -0.2 -1.7 aldo/keto reductase compare
A4249_RS13330 -0.2 -1.1 hypothetical protein compare
A4249_RS14235 -0.2 -1.8 NAD(P)-dependent alcohol dehydrogenase compare
A4249_RS09405 -0.2 -0.6 beta-N-acetylhexosaminidase compare
A4249_RS11710 -0.2 -1.2 hypothetical protein compare
A4249_RS00990 -0.2 -1.1 hypothetical protein compare
A4249_RS07185 -0.2 -1.4 hypothetical protein compare
A4249_RS05790 -0.2 -1.2 transmembrane anchor protein compare
A4249_RS04085 -0.2 -0.9 ribonuclease E/G compare
A4249_RS00440 -0.2 -0.4 hypothetical protein compare
A4249_RS09735 -0.2 -1.3 NUDIX domain-containing protein compare
A4249_RS04790 -0.2 -0.8 sulfurtransferase TusA family protein compare
A4249_RS00905 -0.2 -1.5 DNA-deoxyinosine glycosylase compare
A4249_RS10390 -0.2 -0.6 translation elongation factor 4 compare
A4249_RS13745 -0.2 -1.6 DUF3576 domain-containing protein compare
A4249_RS00740 -0.2 -0.9 HAD family hydrolase compare
A4249_RS02865 -0.2 -0.7 arsenate reductase family protein compare
A4249_RS05745 -0.2 -1.3 ImmA/IrrE family metallo-endopeptidase compare
A4249_RS00750 -0.2 -1.6 S41 family peptidase compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Thymine across organisms