Experiment set2S269 for Phocaeicola dorei CL03T12C01

Compare to:

Amylopectin from Potato; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
ABI39_RS00475 -6.9 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
ABI39_RS19930 -6.5 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
ABI39_RS04695 -6.4 -4.4 shikimate kinase compare
ABI39_RS10195 -6.3 -4.4 2-isopropylmalate synthase compare
ABI39_RS10205 -6.3 -4.1 3-isopropylmalate dehydratase small subunit compare
ABI39_RS02975 -6.3 -6.1 argininosuccinate synthase compare
ABI39_RS04425 -6.2 -7.4 hypothetical protein compare
ABI39_RS12645 -6.2 -7.4 chorismate synthase compare
ABI39_RS04475 -6.1 -7.3 alpha-amylase compare
ABI39_RS10215 -6.1 -7.2 3-isopropylmalate dehydrogenase compare
ABI39_RS04430 -6.0 -12.8 glycoside hydrolase family 13 protein compare
ABI39_RS21065 -6.0 -4.1 indole-3-glycerol phosphate synthase TrpC compare
ABI39_RS07095 -6.0 -10.0 argininosuccinate lyase compare
ABI39_RS04460 -5.9 -9.1 RagB/SusD family nutrient uptake outer membrane protein compare
ABI39_RS21050 -5.9 -4.1 anthranilate synthase component I family protein compare
ABI39_RS07790 -5.9 -5.7 M20 family metallo-hydrolase compare
ABI39_RS10510 -5.9 -4.1 prephenate dehydratase compare
ABI39_RS04455 -5.9 -10.5 TonB-dependent receptor compare
ABI39_RS19925 -5.8 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABI39_RS02960 -5.8 -6.9 pyrroline-5-carboxylate reductase compare
ABI39_RS00770 -5.8 -6.9 pyridoxal phosphate-dependent aminotransferase compare
ABI39_RS10495 -5.7 -4.0 prephenate dehydrogenase compare
ABI39_RS10435 -5.7 -3.9 cofactor-independent phosphoglycerate mutase compare
ABI39_RS04685 -5.7 -6.1 acetylglutamate kinase compare
ABI39_RS02880 -5.6 -7.7 glutamate 5-kinase compare
ABI39_RS10200 -5.6 -5.5 3-isopropylmalate dehydratase large subunit compare
ABI39_RS21075 -5.6 -3.8 tryptophan synthase subunit alpha compare
ABI39_RS16910 -5.6 -5.4 3-phosphoglycerate dehydrogenase compare
ABI39_RS10640 -5.5 -5.3 serine dehydratase subunit alpha family protein compare
ABI39_RS00405 -5.4 -16.7 phosphoribosylformylglycinamidine synthase compare
ABI39_RS02965 -5.4 -9.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS10440 -5.4 -7.2 threonine synthase compare
ABI39_RS06010 -5.3 -3.7 polysaccharide deacetylase family protein compare
ABI39_RS10260 -5.3 -6.3 adenylosuccinate synthase compare
ABI39_RS10210 -5.3 -7.3 2-isopropylmalate synthase compare
ABI39_RS06055 -5.3 -3.7 phosphoribosylamine--glycine ligase compare
ABI39_RS02970 -5.3 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABI39_RS10505 -5.2 -5.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABI39_RS05660 -5.2 -3.6 acetyl-CoA hydrolase/transferase family protein compare
ABI39_RS20355 -5.2 -7.1 carboxypeptidase-like regulatory domain-containing protein compare
ABI39_RS16905 -5.1 -6.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABI39_RS06250 -5.1 -10.3 4-phosphoerythronate dehydrogenase PdxB compare
ABI39_RS06670 -5.0 -4.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
ABI39_RS19935 -5.0 -4.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABI39_RS10650 -5.0 -17.9 AraC family transcriptional regulator compare
ABI39_RS10430 -5.0 -8.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
ABI39_RS07005 -5.0 -4.8 type II 3-dehydroquinate dehydratase compare
ABI39_RS02980 -5.0 -6.8 N-acetyltransferase compare
ABI39_RS17420 -5.0 -4.8 serine hydroxymethyltransferase compare
ABI39_RS02875 -5.0 -8.2 glutamate-5-semialdehyde dehydrogenase compare
ABI39_RS12715 -4.8 -6.6 dihydroxy-acid dehydratase compare
ABI39_RS10870 -4.8 -8.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
ABI39_RS02870 -4.8 -6.0 acetylornithine carbamoyltransferase compare
ABI39_RS15320 -4.7 -7.2 PorT family protein compare
ABI39_RS09245 -4.7 -10.4 cardiolipin synthase compare
ABI39_RS02500 -4.7 -7.1 pyridoxine 5'-phosphate synthase compare
ABI39_RS12720 -4.6 -6.3 biosynthetic-type acetolactate synthase large subunit compare
ABI39_RS01650 -4.6 -3.2 methylmalonyl-CoA mutase small subunit compare
ABI39_RS21060 -4.6 -7.0 anthranilate phosphoribosyltransferase compare
ABI39_RS14030 -4.5 -3.1 MFS transporter compare
ABI39_RS11405 -4.5 -6.1 hypothetical protein compare
ABI39_RS02315 -4.5 -5.3 IMP dehydrogenase compare
ABI39_RS08305 -4.4 -4.2 DUF4831 family protein compare
ABI39_RS12725 -4.4 -5.9 acetolactate synthase small subunit compare
ABI39_RS08195 -4.4 -4.2 hypothetical protein compare
ABI39_RS14235 -4.3 -2.2 hypothetical protein compare
ABI39_RS06675 -4.3 -6.0 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
ABI39_RS12665 -4.3 -4.1 shikimate dehydrogenase compare
ABI39_RS06995 -4.3 -5.0 tetratricopeptide repeat protein compare
ABI39_RS11830 -4.2 -2.9 ATP phosphoribosyltransferase compare
ABI39_RS17770 -4.2 -2.9 flavodoxin family protein compare
ABI39_RS01655 -4.2 -8.0 methylmalonyl-CoA mutase compare
ABI39_RS14265 -4.2 -6.3 ATP-dependent dethiobiotin synthetase BioD compare
ABI39_RS14715 -4.2 -4.7 RidA family protein compare
ABI39_RS06920 -4.1 -2.8 glycosyltransferase compare
ABI39_RS04860 -4.1 -2.4 HigA family addiction module antidote protein compare
ABI39_RS04690 -4.1 -11.7 biosynthetic arginine decarboxylase compare
ABI39_RS11835 -4.1 -2.8 histidinol dehydrogenase compare
ABI39_RS14250 -4.1 -7.0 8-amino-7-oxononanoate synthase compare
ABI39_RS15410 -4.1 -5.5 DUF4296 domain-containing protein compare
ABI39_RS07815 -4.0 -3.7 RNA polymerase sigma factor compare
ABI39_RS06380 -4.0 -7.0 GH3 auxin-responsive promoter family protein compare
ABI39_RS14245 -4.0 -11.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABI39_RS14260 -3.9 -7.5 malonyl-ACP O-methyltransferase BioC compare
ABI39_RS20930 -3.8 -11.9 tetratricopeptide repeat protein compare
ABI39_RS08850 -3.8 -3.2 toprim domain-containing protein compare
ABI39_RS17180 -3.8 -5.7 phosphatase PAP2 family protein compare
ABI39_RS14255 -3.8 -3.0 DUF452 family protein compare
ABI39_RS05175 -3.7 -4.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABI39_RS05280 -3.7 -11.0 S41 family peptidase compare
ABI39_RS12955 -3.7 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABI39_RS15610 -3.7 -1.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABI39_RS12735 -3.7 -6.5 ketol-acid reductoisomerase compare
ABI39_RS12675 -3.7 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABI39_RS21045 -3.7 -3.5 tryptophan synthase subunit beta compare
ABI39_RS04505 -3.7 -5.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
ABI39_RS20070 -3.6 -3.5 UDP-glucose 4-epimerase GalE compare
ABI39_RS04930 -3.6 -4.5 helix-turn-helix transcriptional regulator compare
ABI39_RS15950 -3.6 -1.9 hypothetical protein compare
ABI39_RS13170 -3.5 -9.5 Crp/Fnr family transcriptional regulator compare
ABI39_RS10110 -3.5 -6.3 S9 family peptidase compare
ABI39_RS15415 -3.5 -3.4 hypothetical protein compare
ABI39_RS06220 -3.5 -7.2 glycosyltransferase family 2 protein compare
ABI39_RS16620 -3.5 -1.0 phage integrase SAM-like domain-containing protein compare
ABI39_RS02290 -3.4 -2.2 hypothetical protein compare
ABI39_RS19945 -3.4 -9.0 aspartate kinase compare
ABI39_RS17310 -3.4 -8.7 hypothetical protein compare
ABI39_RS20410 -3.4 -4.0 GDP-mannose 4,6-dehydratase compare
ABI39_RS01300 -3.4 -10.2 NADP-specific glutamate dehydrogenase compare
ABI39_RS02125 -3.4 -1.0 hypothetical protein compare
ABI39_RS00760 -3.4 -1.4 YjgP/YjgQ family permease compare
ABI39_RS18330 -3.4 -6.3 PD40 domain-containing protein compare
ABI39_RS12420 -3.4 -5.0 OadG family protein compare
ABI39_RS06925 -3.3 -7.5 glycosyltransferase compare
ABI39_RS19920 -3.3 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
ABI39_RS20420 -3.3 -10.2 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS11840 -3.2 -2.2 histidinol-phosphate transaminase compare
ABI39_RS03320 -3.2 -5.5 FecR domain-containing protein compare
ABI39_RS10500 -3.2 -3.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
ABI39_RS15400 -3.1 -5.6 TraR/DksA C4-type zinc finger protein compare
ABI39_RS11845 -3.1 -3.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABI39_RS12970 -3.1 -5.5 CDP-alcohol phosphatidyltransferase family protein compare
ABI39_RS16695 -3.1 -8.4 carbon-nitrogen hydrolase compare
ABI39_RS12770 -3.0 -2.1 hypothetical protein compare
ABI39_RS15615 -3.0 -2.6 cysteine-rich CWC family protein compare
ABI39_RS11545 -3.0 -3.6 hypothetical protein compare
ABI39_RS13190 -3.0 -8.3 hypothetical protein compare
ABI39_RS12150 -3.0 -3.5 hotdog fold thioesterase compare
ABI39_RS17965 -3.0 -3.7 YegS/Rv2252/BmrU family lipid kinase compare
ABI39_RS01360 -3.0 -4.1 hypothetical protein compare
ABI39_RS06235 -3.0 -6.1 UDP-galactopyranose mutase compare
ABI39_RS14465 -2.9 -6.5 hypothetical protein compare
ABI39_RS12415 -2.9 -2.8 biotin/lipoyl-binding protein compare
ABI39_RS04135 -2.9 -10.1 mannose-1-phosphate guanylyltransferase compare
ABI39_RS06990 -2.9 -8.3 DUF4369 domain-containing protein compare
ABI39_RS13845 -2.9 -0.8 histone H1 compare
ABI39_RS14560 -2.9 -1.9 aspartate 1-decarboxylase compare
ABI39_RS04280 -2.9 -2.8 DUF4292 domain-containing protein compare
ABI39_RS17750 -2.9 -3.3 thiamine phosphate synthase compare
ABI39_RS03880 -2.9 -11.3 PDZ domain-containing protein compare
ABI39_RS09515 -2.9 -2.7 nucleoside deaminase compare
ABI39_RS11140 -2.8 -0.8 undecaprenyl-phosphate glucose phosphotransferase compare
ABI39_RS07090 -2.7 -3.0 hypothetical protein compare
ABI39_RS17640 -2.7 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABI39_RS17335 -2.7 -8.8 phosphatidylinositol-4-phosphate 5-kinase compare
ABI39_RS12965 -2.7 -6.2 hypothetical protein compare
ABI39_RS17755 -2.7 -2.5 thiazole synthase compare
ABI39_RS16040 -2.6 -0.7 hypothetical protein compare
ABI39_RS13185 -2.6 -1.3 manganese efflux pump compare
ABI39_RS11485 -2.6 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABI39_RS12425 -2.6 -5.8 acyl-CoA carboxylase subunit beta compare
ABI39_RS17780 -2.6 -6.5 HesA/MoeB/ThiF family protein compare
ABI39_RS08255 -2.6 -6.4 DUF3256 family protein compare
ABI39_RS00515 -2.5 -1.6 hypothetical protein compare
ABI39_RS21620 -2.5 -5.2 triose-phosphate isomerase compare
ABI39_RS06935 -2.5 -7.3 hemolysin activation protein compare
ABI39_RS19465 -2.5 -2.5 hypothetical protein compare
ABI39_RS16320 -2.4 -1.2 DUF3989 domain-containing protein compare
ABI39_RS23150 -2.4 -1.0 S26 family signal peptidase compare
ABI39_RS17195 -2.4 -8.2 hypothetical protein compare
ABI39_RS15760 -2.4 -1.0 hypothetical protein compare
ABI39_RS08780 -2.4 -1.7 DUF3408 domain-containing protein compare
ABI39_RS04465 -2.4 -6.8 SusF/SusE family outer membrane protein compare
ABI39_RS00755 -2.4 -6.3 hypothetical protein compare
ABI39_RS04285 -2.3 -8.3 tetratricopeptide repeat protein compare
ABI39_RS12995 -2.3 -9.1 inositol-3-phosphate synthase compare
ABI39_RS00240 -2.3 -2.8 NigD-like N-terminal domain-containing protein compare
ABI39_RS07725 -2.3 -4.7 porin family protein compare
ABI39_RS19845 -2.3 -1.3 hypothetical protein compare
ABI39_RS17320 -2.3 -2.5 YhcH/YjgK/YiaL family protein compare
ABI39_RS00210 -2.3 -2.7 DUF4827 domain-containing protein compare
ABI39_RS07560 -2.3 -1.1 hypothetical protein compare
ABI39_RS16885 -2.3 -2.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit D compare
ABI39_RS16235 -2.3 -2.3 hypothetical protein compare
ABI39_RS11185 -2.3 -0.9 DUF3408 domain-containing protein compare
ABI39_RS04730 -2.2 -0.9 Lrp/AsnC ligand binding domain-containing protein compare
ABI39_RS16515 -2.2 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
ABI39_RS17730 -2.2 -5.0 carboxynorspermidine decarboxylase compare
ABI39_RS14240 -2.2 -3.5 biotin synthase BioB compare
ABI39_RS11940 -2.2 -8.7 saccharopine dehydrogenase family protein compare
ABI39_RS09685 -2.1 -1.2 hypothetical protein compare
ABI39_RS19950 -2.1 -2.0 diaminopimelate decarboxylase compare
ABI39_RS13855 -2.1 -3.3 response regulator transcription factor compare
ABI39_RS17775 -2.1 -7.1 2-iminoacetate synthase ThiH compare
ABI39_RS17315 -2.1 -8.9 alpha amylase C-terminal domain-containing protein compare
ABI39_RS17175 -2.1 -1.4 tetratricopeptide repeat protein compare
ABI39_RS02355 -2.1 -3.6 ABC transporter ATP-binding protein compare
ABI39_RS00205 -2.1 -2.0 phosphoglucosamine mutase compare
ABI39_RS17950 -2.1 -1.4 Crp/Fnr family transcriptional regulator compare
ABI39_RS13010 -2.1 -4.5 hypothetical protein compare
ABI39_RS19400 -2.1 -0.8 helix-turn-helix domain-containing protein compare
ABI39_RS08135 -2.1 -1.3 YicC family protein compare
ABI39_RS06940 -2.1 -3.1 LicD family protein compare
ABI39_RS19385 -2.1 -1.8 hypothetical protein compare
ABI39_RS11710 -2.0 -2.0 RNA polymerase sigma factor compare
ABI39_RS13720 -2.0 -2.6 PqqD family protein compare
ABI39_RS10090 -2.0 -7.6 hypothetical protein compare
ABI39_RS17945 -2.0 -9.1 glutamine synthetase III compare
ABI39_RS21650 -2.0 -1.6 phage integrase SAM-like domain-containing protein compare
ABI39_RS18745 -2.0 -1.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Amylopectin from Potato; autoclaved in Phocaeicola dorei CL03T12C01

For carbon source Amylopectin from Potato; autoclaved across organisms