Experiment set2S263 for Escherichia coli ECRC101

Compare to:

WM_RB68

200 most important genes:

  gene name fitness t score description  
MCAODC_06165 rfaG -4.9 -5.8 Lipopolysaccharide core biosynthesis protein RfaG compare
MCAODC_12295 guaA -4.4 -3.0 glutamine-hydrolyzing GMP synthase compare
MCAODC_00860 dksA -4.0 -9.8 RNA polymerase-binding protein DksA compare
MCAODC_00995 acnB -3.9 -2.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
MCAODC_12720 ptsI -3.8 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
MCAODC_21675 rssB -3.8 -6.0 two-component system response regulator RssB compare
MCAODC_20530 wcaA -3.4 -3.0 glycosyl transferase compare
MCAODC_05085 wecA -3.4 -16.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
MCAODC_12460 purC -3.3 -7.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
MCAODC_21670 galU -3.1 -3.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MCAODC_12340 purM -3.1 -8.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MCAODC_24855 ihfB -3.1 -1.9 integration host factor subunit beta compare
MCAODC_04590 typA -3.1 -11.9 ribosome-dependent GTPase TypA compare
MCAODC_20540 -3.0 -12.5 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
MCAODC_27055 purE -3.0 -5.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
MCAODC_12290 guaB -3.0 -4.0 IMP dehydrogenase compare
MCAODC_01360 apaH -2.9 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
MCAODC_06190 rfaB -2.9 -5.0 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
MCAODC_19155 nudB -2.7 -3.9 dihydroneopterin triphosphate diphosphatase compare
MCAODC_27555 clpX -2.6 -3.5 ATP-dependent protease ATP-binding subunit ClpX compare
MCAODC_03810 purH -2.6 -13.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
MCAODC_08475 lptC -2.6 -4.3 LPS export ABC transporter periplasmic protein LptC compare
MCAODC_08450 ptsN -2.6 -3.4 PTS IIA-like nitrogen regulatory protein PtsN compare
MCAODC_12000 purL -2.5 -16.3 phosphoribosylformylglycinamidine synthase compare
MCAODC_27060 purK -2.5 -9.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
MCAODC_02745 purA -2.5 -2.1 adenylosuccinate synthase compare
MCAODC_09845 tkt -2.5 -2.7 transketolase compare
MCAODC_20490 wbdQ -2.3 -2.0 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
MCAODC_06185 rfaJ -2.3 -6.1 glucosyltransferase compare
MCAODC_15430 sopA -2.2 -4.5 plasmid-partitioning protein SopA compare
MCAODC_12335 purN -2.2 -9.1 phosphoribosylglycinamide formyltransferase compare
MCAODC_14170 nrdA -2.2 -1.6 ribonucleoside-diphosphate reductase subunit alpha compare
MCAODC_13755 purF -2.1 -10.8 amidophosphoribosyltransferase compare
MCAODC_14915 rusA -2.1 -2.1 crossover junction endodeoxyribonuclease RusA compare
MCAODC_01715 serB -2.1 -7.1 phosphoserine phosphatase compare
MCAODC_24880 serC -2.1 -7.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
MCAODC_03815 purD -2.0 -8.3 Phosphoribosylamine--glycine ligase compare
MCAODC_25195 -2.0 -1.4 DUF1418 domain-containing protein compare
MCAODC_20525 wzy -2.0 -4.4 O157 family O-antigen polymerase compare
MCAODC_21850 ychF -2.0 -1.5 redox-regulated ATPase YchF compare
MCAODC_24775 aspC -2.0 -2.0 aspartate transaminase compare
MCAODC_25180 ybjN -1.9 -3.5 Uncharacterized protein YbjN compare
MCAODC_26025 tolB -1.9 -5.4 Tol-Pal system protein TolB compare
MCAODC_06195 rfaL -1.9 -5.2 O-antigen ligase RfaL compare
MCAODC_12300 yfgI -1.7 -1.3 Uncharacterized protein YfgI compare
MCAODC_08625 nusA -1.7 -2.4 Transcription termination/antitermination protein NusA compare
MCAODC_10900 cysI -1.7 -7.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
MCAODC_20605 wcaE -1.7 -1.9 colanic acid biosynthesis glycosyltransferase WcaE compare
MCAODC_13240 -1.7 -2.0 Replication protein P compare
MCAODC_27545 -1.7 -6.0 Lon protease compare
MCAODC_11635 espM2 -1.7 -1.6 T3SS effector guanine nucleotide exchange factor EspM2 compare
MCAODC_21865 ldcA -1.6 -2.5 muramoyltetrapeptide carboxypeptidase compare
MCAODC_12270 bamB -1.6 -4.2 outer membrane protein assembly factor BamB compare
MCAODC_19890 -1.6 -1.5 Phage-related protein, tail protein J compare
MCAODC_22110 -1.6 -2.4 Tail tube terminator protein compare
MCAODC_17170 -1.6 -1.6 DUF1627 domain-containing protein compare
MCAODC_09775 yggS -1.6 -5.1 pyridoxal phosphate homeostasis protein compare
MCAODC_09980 serA -1.6 -7.5 phosphoglycerate dehydrogenase compare
MCAODC_08200 fis -1.5 -1.3 DNA-binding transcriptional regulator Fis compare
MCAODC_15435 sopA -1.5 -2.2 plasmid-partitioning protein SopA compare
MCAODC_26035 tolR -1.5 -1.2 colicin uptake protein TolR compare
MCAODC_13750 cvpA -1.4 -3.2 colicin V production protein compare
MCAODC_08660 pnp -1.4 -4.5 polyribonucleotide nucleotidyltransferase compare
MCAODC_06270 cysE -1.4 -0.9 serine O-acetyltransferase compare
MCAODC_18255 ydiT -1.4 -2.2 Ferredoxin-like protein YdiT compare
MCAODC_25955 gpmA -1.4 -2.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
MCAODC_19070 zwf -1.4 -2.7 glucose-6-phosphate dehydrogenase compare
MCAODC_01340 surA -1.4 -3.2 peptidylprolyl isomerase SurA compare
MCAODC_22960 yceD -1.3 -2.6 23S rRNA accumulation protein YceD compare
MCAODC_21010 glpR -1.3 -1.1 transcriptional regulator compare
MCAODC_24420 ydiL -1.3 -0.9 CPBP family intramembrane metalloprotease compare
MCAODC_14755 -1.3 -3.6 hypothetical protein compare
MCAODC_10905 cysH -1.3 -3.5 phosphoadenosine phosphosulfate reductase compare
MCAODC_04330 pfkA -1.3 -1.5 6-phosphofructokinase compare
MCAODC_22420 -1.3 -1.5 DUF4222 domain-containing protein compare
MCAODC_16895 ydeI -1.3 -3.1 YdeI family stress tolerance OB fold protein compare
MCAODC_10895 cysJ -1.2 -7.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
MCAODC_16485 yddH -1.2 -2.1 Uncharacterized protein YddH compare
MCAODC_06175 waaO -1.2 -2.1 lipopolysaccharide 3-alpha-galactosyltransferase compare
MCAODC_24140 gfcE -1.2 -6.2 Putative polysaccharide export protein GfcE compare
MCAODC_14780 -1.2 -1.9 conjugal transfer protein TraR compare
MCAODC_22520 rri1 -1.2 -2.3 phage tail protein compare
MCAODC_19430 -1.2 -2.5 hypothetical protein compare
MCAODC_18220 ydiF -1.2 -1.7 Acetate CoA-transferase YdiF compare
MCAODC_19835 hiuH -1.2 -2.3 hydroxyisourate hydrolase compare
MCAODC_23895 cadC1 -1.2 -1.3 transcriptional regulator compare
MCAODC_27410 rsmS -1.2 -2.6 pleiotropic regulatory protein RsmS compare
MCAODC_19405 -1.2 -1.9 DUF4761 domain-containing protein compare
MCAODC_27020 fimA -1.2 -2.3 type 1 fimbrial major subunit FimA compare
MCAODC_28035 lacI -1.2 -3.9 DNA-binding transcriptional repressor LacI compare
MCAODC_08640 rbfA -1.2 -2.6 30S ribosome-binding factor RbfA compare
MCAODC_24145 etp -1.2 -4.0 protein-tyrosine-phosphatase Etp compare
MCAODC_24965 lrp -1.2 -4.0 leucine-responsive transcriptional regulator Lrp compare
MCAODC_16945 nleG6-2 -1.2 -0.9 DUF1076 domain-containing protein compare
MCAODC_15150 repA2 -1.1 -7.4 Replication regulatory protein repA2 compare
MCAODC_13395 -1.1 -1.5 SAR-endolysin compare
MCAODC_07710 cysG -1.1 -6.1 siroheme synthase CysG compare
MCAODC_00185 Thr_trna -1.1 -0.9 tRNA-Thr(cgt) compare
MCAODC_24125 gfcB -1.1 -2.3 Uncharacterized lipoprotein GfcB compare
MCAODC_02550 cysQ -1.1 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MCAODC_11910 rseA -1.1 -2.6 anti-sigma-E factor RseA compare
MCAODC_11930 lepA -1.1 -1.9 translation elongation factor 4 compare
MCAODC_21025 gatB -1.0 -0.9 PTS galactitol transporter subunit IIB compare
MCAODC_26140 odhB -1.0 -1.5 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
MCAODC_13235 -1.0 -1.6 Replication protein O compare
MCAODC_17775 ydgA -1.0 -1.7 Protein YdgA compare
MCAODC_20475 perB -1.0 -2.1 GDP-perosamine N-acetyltransferase compare
MCAODC_22980 rne -1.0 -1.8 ribonuclease E compare
MCAODC_04605 glnL -1.0 -4.2 nitrogen regulation protein NR(II) compare
MCAODC_26030 tolA -1.0 -2.2 cell envelope integrity protein TolA compare
MCAODC_24475 -1.0 -1.6 hypothetical protein compare
MCAODC_23830 fhaC -1.0 -1.4 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
MCAODC_24130 gfcC -1.0 -3.4 Uncharacterized protein GfcC compare
MCAODC_10820 -1.0 -1.8 LemA family protein compare
MCAODC_06170 rfaP -1.0 -2.5 lipopolysaccharide core heptose(I) kinase RfaP compare
MCAODC_24150 etk -1.0 -4.8 tyrosine-protein kinase compare
MCAODC_20220 Asn_trna -1.0 -0.7 tRNA-Asn(gtt) compare
MCAODC_23910 -1.0 -1.2 GGDEF domain-containing protein compare
MCAODC_14300 napD -0.9 -3.3 chaperone NapD compare
MCAODC_19425 -0.9 -1.7 Phage protein compare
MCAODC_00455 -0.9 -2.5 Peptidoglycan-binding protein LysM compare
MCAODC_23355 spo0J -0.9 -1.9 transcriptional regulator compare
MCAODC_17040 -0.9 -2.5 Portal protein compare
MCAODC_16570 yddM -0.9 -1.9 HigA family addiction module antitoxin compare
MCAODC_23585 -0.9 -1.3 Membrane protein compare
MCAODC_13200 -0.9 -1.7 hypothetical protein compare
MCAODC_24780 gloC -0.9 -1.4 hydroxyacylglutathione hydrolase GloC compare
MCAODC_26145 sucA -0.9 -2.1 2-oxoglutarate dehydrogenase E1 component compare
MCAODC_23260 -0.9 -1.9 toxin compare
MCAODC_05845 sepD -0.9 -1.8 type III secretion system LEE switch protein SepD compare
MCAODC_19645 yedE -0.9 -2.3 selenium metabolism membrane protein YedE/FdhT compare
MCAODC_20110 -0.9 -3.3 hypothetical protein compare
MCAODC_17235 -0.9 -1.0 site-specific integrase compare
MCAODC_09480 exbB -0.9 -4.4 tol-pal system-associated acyl-CoA thioesterase compare
MCAODC_26380 nagA -0.9 -4.1 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_03425 -0.9 -2.4 hypothetical protein compare
MCAODC_26375 nagB -0.9 -4.7 glucosamine-6-phosphate deaminase compare
MCAODC_16705 ydeR -0.9 -1.1 Uncharacterized fimbrial-like protein YdeR compare
MCAODC_05280 asnC -0.9 -5.0 transcriptional regulator AsnC compare
MCAODC_17160 -0.9 -1.9 hypothetical protein compare
MCAODC_11505 -0.9 -1.0 hypothetical protein compare
MCAODC_21925 ycgN -0.9 -2.4 YcgN family cysteine cluster protein compare
MCAODC_18400 ybcI -0.9 -2.0 metal-dependent hydrolase compare
MCAODC_22415 -0.8 -3.1 DNA primase compare
MCAODC_07720 nirD -0.8 -2.7 nitrite reductase small subunit NirD compare
MCAODC_01625 thrA -0.8 -6.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
MCAODC_12040 glyA -0.8 -0.9 serine hydroxymethyltransferase compare
MCAODC_15635 rluB -0.8 -2.1 23S rRNA pseudouridine(2605) synthase RluB compare
MCAODC_01620 thrB -0.8 -3.1 homoserine kinase compare
MCAODC_27440 tomB -0.8 -0.8 Hha toxicity modulator TomB compare
MCAODC_15880 pspE -0.8 -1.8 thiosulfate sulfurtransferase PspE compare
MCAODC_03575 plsB -0.8 -0.7 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
MCAODC_11400 ygaP -0.8 -1.5 thiosulfate sulfurtransferase YgaP compare
MCAODC_12730 cysK -0.8 -4.9 cysteine synthase A compare
MCAODC_24055 -0.8 -1.1 YccE compare
MCAODC_11320 ygaZ -0.8 -3.3 L-valine exporter subunit YgaZ compare
MCAODC_00230 ykfJ -0.8 -1.4 Putative uncharacterized protein YkfJ compare
MCAODC_13155 -0.8 -0.6 cruciferin compare
MCAODC_16155 ydbL -0.8 -1.4 DUF1318 domain-containing protein compare
MCAODC_27135 hyi -0.8 -1.1 hydroxypyruvate isomerase compare
MCAODC_06955 pitA -0.8 -1.1 inorganic phosphate transporter PitA compare
MCAODC_09485 exbD -0.8 -2.3 TonB system transport protein ExbD compare
MCAODC_19830 hprR -0.8 -2.5 response regulator transcription factor HprR compare
MCAODC_24120 -0.8 -1.3 Threonine-rich inner membrane protein GfcA compare
MCAODC_16335 sutR -0.8 -1.2 DNA-binding transcriptional regulator SutR compare
MCAODC_17245 iS285 -0.8 -2.1 IS256 family transposase compare
MCAODC_20810 -0.8 -1.7 Tail tube protein compare
MCAODC_15950 ycjW -0.8 -1.7 Uncharacterized HTH-type transcriptional regulator YcjW compare
MCAODC_19995 -0.8 -1.8 hypothetical protein compare
MCAODC_21940 -0.8 -2.5 hypothetical protein compare
MCAODC_21840 ychH -0.7 -1.9 stress-induced protein YchH compare
MCAODC_15400 ccdB -0.7 -0.6 type II toxin-antitoxin system toxin CcdB compare
MCAODC_18210 ydiB -0.7 -2.3 quinate/shikimate dehydrogenase compare
MCAODC_24135 gfcD -0.7 -4.9 Uncharacterized lipoprotein GfcD compare
MCAODC_00465 -0.7 -0.9 hypothetical protein compare
MCAODC_13850 hxpA -0.7 -2.3 hexitol phosphatase HxpA compare
MCAODC_07520 -0.7 -1.8 NfuA family Fe-S biogenesis protein compare
MCAODC_18285 selO -0.7 -3.0 protein adenylyltransferase SelO compare
MCAODC_03430 tyrB -0.7 -4.1 aromatic amino acid transaminase compare
MCAODC_13840 yfbV -0.7 -2.5 UPF0208 membrane protein YfbV compare
MCAODC_14150 yfaE -0.7 -1.2 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
MCAODC_26040 tolQ -0.7 -1.0 Tol-Pal system protein TolQ compare
MCAODC_10975 cysC -0.7 -4.3 Adenylyl-sulfate kinase compare
MCAODC_14870 -0.7 -1.0 replication protein P compare
MCAODC_21335 -0.7 -0.8 phage tail protein compare
MCAODC_15735 yciZ -0.7 -1.5 UPF0509 protein YciZ compare
MCAODC_21600 clsA -0.7 -1.6 cardiolipin synthase ClsA compare
MCAODC_10305 fliN -0.7 -2.1 YscQ/HrcQ family type III secretion apparatus protein compare
MCAODC_23045 flgM -0.7 -0.7 anti-sigma-28 factor FlgM compare
MCAODC_11640 -0.7 -0.7 DinI-like protein Z3916/ECs3483 compare
MCAODC_20445 hisA -0.7 -1.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
MCAODC_04180 metJ -0.7 -2.3 met regulon transcriptional regulator MetJ compare
MCAODC_11660 rnfH -0.7 -2.3 RnfH family protein compare
MCAODC_27835 proC -0.7 -1.7 pyrroline-5-carboxylate reductase compare
MCAODC_23650 ureD1 -0.7 -2.2 Putative urease accessory UreD-like protein compare
MCAODC_02435 yjgA -0.7 -2.9 ribosome-associated protein compare
MCAODC_22495 -0.7 -0.7 CP4-44 prophage putative disrupted hemin or colicin receptor compare
MCAODC_19715 fliM -0.7 -2.4 flagellar motor switch protein FliM compare
MCAODC_27170 -0.7 -1.2 Protein compare
MCAODC_16615 ddpB -0.7 -1.8 putative D,D-dipeptide transport system permease protein DdpB compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms