Experiment set2S261 for Escherichia coli ECRC101

Compare to:

WM_TP9

200 most detrimental genes:

  gene name fitness t score description  
MCAODC_11020 rpoS +2.0 15.7 RNA polymerase sigma factor RpoS compare
MCAODC_15510 yubL +1.7 1.8 UPF0401 protein YubL compare
MCAODC_02770 hfq +1.5 4.8 RNA chaperone Hfq compare
MCAODC_17700 mdtI +1.5 1.4 multidrug/spermidine efflux SMR transporter subunit MdtI compare
MCAODC_14170 nrdA +1.5 1.7 ribonucleoside-diphosphate reductase subunit alpha compare
MCAODC_16475 pptA +1.4 2.9 tautomerase PptA compare
MCAODC_10380 +1.3 1.9 Transglycosylase SLT domain-containing protein compare
MCAODC_16550 yddG +1.3 2.8 aromatic amino acid efflux DMT transporter YddG compare
MCAODC_23670 +1.2 2.3 restriction endonuclease compare
MCAODC_20145 +1.2 1.9 DUF1391 domain-containing protein compare
MCAODC_18565 ynjH +1.2 1.9 Uncharacterized protein YnjH compare
MCAODC_14750 +1.2 2.2 Putative bacteriophage protein compare
MCAODC_17575 +1.1 2.9 exonuclease compare
MCAODC_06780 gadW +1.1 9.2 acid resistance transcriptional activator GadW compare
MCAODC_07415 glgB +1.1 9.7 1,4-alpha-glucan branching enzyme compare
MCAODC_18095 +1.1 1.6 Putative oxidoreductase Fe-S subunit compare
MCAODC_23440 +1.1 1.9 hypothetical protein compare
MCAODC_07640 aroK +1.1 5.3 shikimate kinase AroK compare
MCAODC_17100 +1.1 3.5 AraC family transcriptional regulator compare
MCAODC_14235 rcsB +1.1 4.9 transcriptional regulator RcsB compare
MCAODC_16880 mgtS +1.1 1.8 protein MgtS compare
MCAODC_07430 glgA +1.0 8.4 glycogen synthase GlgA compare
MCAODC_18970 yebV +1.0 1.4 Uncharacterized protein YebV compare
MCAODC_07425 glgC +1.0 8.9 glucose-1-phosphate adenylyltransferase compare
MCAODC_17275 +1.0 1.4 T3SS effector NleG compare
MCAODC_16915 ydfH +1.0 2.6 DNA-binding transcriptional regulator YdfH compare
MCAODC_25840 +1.0 2.0 DUF1382 domain-containing protein compare
MCAODC_11230 recA +1.0 1.2 recombinase RecA compare
MCAODC_15160 tap +1.0 1.5 RepA leader peptide Tap compare
MCAODC_00205 crl +1.0 5.9 sigma factor-binding protein Crl compare
MCAODC_19005 yobA +1.0 1.7 CopC domain-containing protein YobA compare
MCAODC_16530 espR1 +1.0 2.2 T3SS effector leucine-rich repeat protein EspR1 compare
MCAODC_11535 +1.0 1.6 protein NinG compare
MCAODC_03505 +1.0 1.8 CPS-53 (KpLE1) prophage protein compare
MCAODC_24215 +0.9 0.9 phage tail protein compare
MCAODC_23045 flgM +0.9 1.2 anti-sigma-28 factor FlgM compare
MCAODC_19460 +0.9 1.5 Phage protein compare
MCAODC_16855 marB +0.9 1.2 multiple antibiotic resistance protein MarB compare
MCAODC_21525 +0.9 1.3 hypothetical protein compare
MCAODC_17035 +0.9 1.2 head-tail connector protein compare
MCAODC_18125 lpp +0.9 0.8 murein lipoprotein Lpp compare
MCAODC_23300 +0.9 0.9 chemotaxis protein compare
MCAODC_22365 +0.9 1.3 hypothetical protein compare
MCAODC_22335 nudJ +0.9 1.7 phosphatase NudJ compare
MCAODC_07150 acpP +0.9 1.3 acyl carrier protein compare
MCAODC_00045 rusA +0.9 0.8 crossover junction endodeoxyribonuclease RusA compare
MCAODC_19175 yecN +0.9 2.2 Inner membrane protein YecN compare
MCAODC_26830 ybdZ +0.9 1.0 Enterobactin biosynthesis protein YbdZ compare
MCAODC_17770 manA +0.9 1.6 mannose-6-phosphate isomerase compare
MCAODC_16255 ydcA +0.9 2.9 Uncharacterized protein YdcA compare
MCAODC_21010 glpR +0.8 1.0 transcriptional regulator compare
MCAODC_04680 yihD +0.8 2.2 Protein YihD compare
MCAODC_21305 +0.8 1.0 phage tail tape measure protein compare
MCAODC_05810 escT +0.8 1.8 type III secretion system LEE export apparatus protein EscT compare
MCAODC_13625 +0.8 1.9 Minor fimbrial subunit compare
MCAODC_08190 yhdU +0.8 1.5 Inner membrane protein YhdU compare
MCAODC_24070 cbpM +0.8 2.3 chaperone modulator CbpM compare
MCAODC_12300 yfgI +0.8 1.1 Uncharacterized protein YfgI compare
MCAODC_15940 ycjV +0.8 1.8 Uncharacterized ABC transporter ATP-binding protein YcjV compare
MCAODC_25565 moaE +0.8 1.2 molybdopterin synthase catalytic subunit MoaE compare
MCAODC_00340 +0.8 3.2 sel1 repeat family protein compare
MCAODC_08785 +0.8 1.9 galactosamine-6-phosphate isomerase compare
MCAODC_21155 metG +0.8 1.3 methionine--tRNA ligase compare
MCAODC_20670 udk +0.8 3.3 uridine kinase compare
MCAODC_19570 uvrC +0.8 3.3 excinuclease ABC subunit UvrC compare
MCAODC_11045 pphB +0.8 1.6 protein-serine/threonine phosphatase compare
MCAODC_23035 flgB +0.8 1.7 flagellar basal body rod protein FlgB compare
MCAODC_08720 yhbO +0.8 2.5 protein/nucleic acid deglycase compare
MCAODC_22095 +0.7 2.1 phage tail assembly protein T compare
MCAODC_24780 gloC +0.7 1.3 hydroxyacylglutathione hydrolase GloC compare
MCAODC_14670 yohP +0.7 1.5 protein YohP compare
MCAODC_15590 trpA +0.7 2.9 tryptophan synthase subunit alpha compare
MCAODC_02755 hflC +0.7 1.7 protease modulator HflC compare
MCAODC_07830 yheO +0.7 1.2 Uncharacterized protein YheO compare
MCAODC_13150 +0.7 1.4 DUF1382 domain-containing protein compare
MCAODC_23560 tnpB +0.7 1.2 IS66 family insertion sequence element accessory protein TnpB compare
MCAODC_24350 +0.7 1.7 hypothetical protein compare
MCAODC_11950 recO +0.7 1.5 DNA repair protein RecO compare
MCAODC_09595 tnpB +0.7 1.2 IS66 family insertion sequence element accessory protein TnpB compare
MCAODC_12280 +0.7 1.1 Protein compare
MCAODC_20380 yeeD +0.7 2.5 Putative sulfur carrier protein YeeD compare
MCAODC_25110 artQ +0.7 3.7 arginine ABC transporter permease ArtQ compare
MCAODC_13470 +0.7 1.8 hypothetical protein compare
MCAODC_21540 +0.7 1.1 hypothetical protein compare
MCAODC_16445 vgrG,tssI +0.7 2.5 type VI secretion system effector VgrG compare
MCAODC_15720 yciH +0.7 0.7 stress response translation initiation inhibitor YciH compare
MCAODC_04230 ftsN +0.7 2.7 cell division protein FtsN compare
MCAODC_20295 +0.7 1.8 dGTPase compare
MCAODC_02325 yjgN +0.7 2.3 Inner membrane protein YjgN compare
MCAODC_17270 nleG7 +0.7 1.9 Type III secretion system effector NleG7, E3 Ubiquitin Ligase compare
MCAODC_21705 narI +0.7 1.5 respiratory nitrate reductase subunit gamma compare
MCAODC_25855 +0.7 2.2 hypothetical protein compare
MCAODC_14820 +0.7 1.6 cell division inhibitor protein compare
MCAODC_06810 gadE +0.7 2.5 acid resistance transcriptional activator GadE compare
MCAODC_16285 ydcJ +0.7 2.3 Uncharacterized protein YdcJ compare
MCAODC_15210 insA +0.7 1.8 Transposase InsA compare
MCAODC_17615 ynfB +0.7 1.3 DUF1283 domain-containing protein compare
MCAODC_22790 potC +0.6 0.8 spermidine/putrescine ABC transporter permease PotC compare
MCAODC_21140 fimA +0.6 0.8 Uncharacterized fimbrial-like protein YehD compare
MCAODC_22085 +0.6 1.4 phage tail protein compare
MCAODC_27630 thiI +0.6 2.5 tRNA sulfurtransferase compare
MCAODC_19750 dsrB +0.6 0.4 protein DsrB compare
MCAODC_01920 gmrSD +0.6 0.9 DUF262 domain-containing protein compare
MCAODC_17390 +0.6 1.3 DUF3950 domain-containing protein compare
MCAODC_24415 +0.6 1.6 Lipoprotein compare
MCAODC_01445 caiF +0.6 2.6 carnitine metabolism transcriptional regulator CaiF compare
MCAODC_18195 ydiL +0.6 1.2 Uncharacterized protein YdiL compare
MCAODC_11200 srlB +0.6 1.1 PTS glucitol/sorbitol transporter subunit IIA compare
MCAODC_07030 sgaB +0.6 2.2 PTS sugar transporter subunit IIB compare
MCAODC_16670 yddA +0.6 1.6 Inner membrane ABC transporter ATP-binding protein YddA compare
MCAODC_06525 yiaG +0.6 1.3 HTH-type transcriptional regulator compare
MCAODC_07410 yhgO +0.6 2.0 Protein YhgO compare
MCAODC_16490 nhoA +0.6 1.7 N-hydroxyarylamine O-acetyltransferase compare
MCAODC_04785 tatB +0.6 2.1 Sec-independent protein translocase protein TatB compare
MCAODC_08995 yqjE +0.6 2.6 Inner membrane protein YqjE compare
MCAODC_14850 +0.6 1.2 Replication protein O compare
MCAODC_20220 Asn_trna +0.6 0.6 tRNA-Asn(gtt) compare
MCAODC_11460 Ile2_trna +0.6 1.3 tRNA-Ile2(cat) compare
MCAODC_26575 rlmH +0.6 0.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MCAODC_11015 nlpD +0.6 3.5 murein hydrolase activator NlpD compare
MCAODC_28150 yahL +0.6 1.5 Uncharacterized protein YahL compare
MCAODC_17935 slyA +0.6 1.5 transcriptional regulator SlyA compare
MCAODC_19800 yedJ +0.6 0.8 phosphohydrolase compare
MCAODC_19580 sdiA +0.6 3.0 transcriptional regulator SdiA compare
MCAODC_09970 argP +0.6 1.4 DNA-binding transcriptional regulator ArgP compare
MCAODC_20290 +0.6 0.9 hypothetical protein compare
MCAODC_16860 eamA +0.6 1.2 O-acetylserine/cysteine exporter compare
MCAODC_15945 ompG +0.6 1.4 monomeric porin OmpG compare
MCAODC_08895 +0.6 1.3 YhaC family protein compare
MCAODC_26635 cspE +0.6 2.6 transcription antiterminator/RNA stability regulator CspE compare
MCAODC_16790 yneE +0.6 1.5 UPF0187 protein YneE compare
MCAODC_20345 +0.6 0.9 toxin of the YeeV-YeeU toxin-antitoxin system compare
MCAODC_08970 yhaI +0.6 0.7 Inner membrane protein YhaI compare
MCAODC_19990 +0.6 1.9 hypothetical protein compare
MCAODC_20975 +0.6 1.3 Replication gene B protein compare
MCAODC_20560 wzxC +0.6 2.0 colanic acid undecaprenyl disphosphate flippase WzxC compare
MCAODC_21460 +0.6 1.8 DUF968 domain-containing protein compare
MCAODC_11135 hycI +0.6 2.3 hydrogenase maturation peptidase HycI compare
MCAODC_18905 rlmA +0.6 1.9 23S rRNA (guanine(745)-N(1))-methyltransferase compare
MCAODC_10780 mazE +0.6 0.6 type II toxin-antitoxin system antitoxin MazE compare
MCAODC_00350 +0.6 0.8 Ankyrin repeat containing virulence factor compare
MCAODC_15835 puuR +0.6 2.3 HTH-type transcriptional regulator PuuR compare
MCAODC_05945 cesD2 +0.6 0.7 LcrR family type III secretion system chaperone CesD2 compare
MCAODC_00580 rcsF +0.6 2.8 Rcs stress response system protein RcsF compare
MCAODC_06095 yicC +0.6 3.2 UPF0701 protein YicC compare
MCAODC_06605 Pro_trna +0.6 1.4 tRNA-Pro(cgg) compare
MCAODC_25715 +0.6 1.3 phage tail protein compare
MCAODC_15860 pspA +0.6 2.0 phage shock protein PspA compare
MCAODC_28370 +0.6 0.7 hypothetical protein compare
MCAODC_12480 ypfN +0.6 0.8 UPF0370 protein YpfN compare
MCAODC_00155 cro +0.6 1.9 Regulatory protein cro compare
MCAODC_16525 narU +0.5 1.6 nitrate/nitrite transporter NarU compare
MCAODC_21470 +0.5 1.0 Hypothetical rem protein compare
MCAODC_09850 cmtB +0.5 1.4 PTS mannitol transporter subunit IIA compare
MCAODC_20090 +0.5 1.4 DUF551 domain-containing protein compare
MCAODC_18215 aroD +0.5 1.7 3-dehydroquinate dehydratase compare
MCAODC_21145 +0.5 1.7 DUF2574 domain-containing protein compare
MCAODC_05985 +0.5 0.6 Aec79 compare
MCAODC_15995 +0.5 1.7 Peptidase-S15 domain-containing protein compare
MCAODC_11875 grcA +0.5 1.4 autonomous glycyl radical cofactor GrcA compare
MCAODC_23280 yeeS +0.5 0.5 UPF0758 protein YeeS compare
MCAODC_16685 ydeO +0.5 1.5 acid stress response transcriptional regulator YdeO compare
MCAODC_07705 yhfL +0.5 1.0 Uncharacterized protein YhfL compare
MCAODC_00470 +0.5 2.0 Uncharacterized lipoprotein YafT compare
MCAODC_25325 gsiA +0.5 1.9 glutathione ABC transporter ATP-binding protein GsiA compare
MCAODC_21995 menH +0.5 1.8 alpha/beta hydrolase compare
MCAODC_20375 sbcB +0.5 1.9 exodeoxyribonuclease I compare
MCAODC_24015 rutD +0.5 1.5 pyrimidine utilization protein D compare
MCAODC_00315 +0.5 1.0 ISAs1-like element ISEc26 family transposase compare
MCAODC_16585 sra +0.5 1.6 stationary-phase-induced ribosome-associated protein compare
MCAODC_20705 terY +0.5 1.8 Uncharacterized protein YegL compare
MCAODC_20700 pphC +0.5 1.9 Serine/threonine-protein phosphatase 3 compare
MCAODC_28345 rclC +0.5 1.6 reactive chlorine species resistance protein RclC compare
MCAODC_13870 lrhA +0.5 2.8 transcriptional regulator LrhA compare
MCAODC_21495 +0.5 0.9 DNA-binding protein compare
MCAODC_13920 nuoJ +0.5 1.5 NADH-quinone oxidoreductase subunit J compare
MCAODC_26540 ybeL +0.5 1.3 zinc ribbon-containing protein compare
MCAODC_05900 map +0.5 1.4 type III secretion system LEE effector Map (Rho guanine exchange factor) compare
MCAODC_10265 araC +0.5 1.4 AraC family transcriptional regulator compare
MCAODC_16385 patD +0.5 1.8 aminobutyraldehyde dehydrogenase compare
MCAODC_20635 wzb +0.5 0.7 low molecular weight protein-tyrosine-phosphatase Wzb compare
MCAODC_05820 etgA +0.5 1.7 type III secretion system LEE muramidase EtgA compare
MCAODC_08900 yhaB +0.5 0.5 Uncharacterized protein YhaB compare
MCAODC_19675 fliE +0.5 0.8 flagellar hook-basal body complex protein FliE compare
MCAODC_04615 +0.5 1.1 Uncharacterized protein YshB compare
MCAODC_09120 ebgC +0.5 1.6 beta-galactosidase subunit beta compare
MCAODC_23225 ycdZ +0.5 1.5 Inner membrane protein YcdZ compare
MCAODC_23930 pgaB +0.5 2.0 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
MCAODC_21935 ycgL +0.5 1.8 Protein YcgL compare
MCAODC_24545 +0.5 1.5 integrase compare
MCAODC_08675 deaD +0.5 2.6 ATP-dependent RNA helicase DeaD compare
MCAODC_20155 +0.5 0.7 DUF1482 domain-containing protein compare
MCAODC_09990 +0.5 1.4 Type I toxin-antitoxin system Ibs family toxin compare
MCAODC_21325 +0.5 1.3 phage tail protein compare
MCAODC_18980 pphA +0.5 1.0 protein-serine/threonine phosphatase compare
MCAODC_08220 yhdT +0.5 0.7 Uncharacterized membrane protein YhdT compare
MCAODC_20955 +0.5 1.2 Uncharacterized protein in GpA 5'region compare
MCAODC_01530 fimD +0.5 1.3 fimbrial assembly protein compare
MCAODC_18815 fadD +0.5 1.9 long-chain-fatty-acid--CoA ligase FadD compare
MCAODC_07625 hofO +0.5 1.9 DNA utilization protein HofO compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage Phage across organisms