Experiment set2S26 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Thymine 0.793 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS06665 -2.7 -3.1 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS02325 -2.6 -3.0 23S ribosomal RNA compare
A4249_RS13805 -2.0 -2.3 HAD family hydrolase compare
A4249_RS07610 -1.3 -1.7 methyltransferase type 11 compare
A4249_RS06230 -1.3 -2.4 OmpH family outer membrane protein compare
A4249_RS01590 -1.2 -2.2 site-specific DNA-methyltransferase compare
A4249_RS16085 -1.1 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
A4249_RS00145 -1.0 -2.0 SURF1 family protein compare
A4249_RS11125 -0.9 -6.8 glycosyltransferase family 9 protein compare
A4249_RS13190 -0.9 -2.1 2-oxo acid dehydrogenase subunit E2 compare
A4249_RS05620 -0.9 -5.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS11150 -0.8 -4.6 capsular biosynthesis protein compare
A4249_RS13035 -0.8 -4.0 hypothetical protein compare
A4249_RS05590 -0.8 -2.6 amino acid ABC transporter substrate-binding protein compare
A4249_RS10390 -0.8 -1.8 translation elongation factor 4 compare
A4249_RS16455 -0.8 -1.0 helix-turn-helix transcriptional regulator compare
A4249_RS00290 -0.8 -1.4 histidine phosphatase family protein compare
A4249_RS13020 -0.8 -4.7 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS13180 -0.8 -1.6 SDR family oxidoreductase compare
A4249_RS13060 -0.7 -6.1 AGE family epimerase/isomerase compare
A4249_RS13025 -0.7 -5.9 hypothetical protein compare
A4249_RS09330 -0.7 -1.3 glycine cleavage system protein GcvH compare
A4249_RS04995 -0.7 -2.1 DUF2171 domain-containing protein compare
A4249_RS05625 -0.7 -5.6 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS11780 -0.7 -1.0 hypothetical protein compare
A4249_RS13200 -0.7 -1.9 thiamine pyrophosphate-dependent enzyme compare
A4249_RS16585 -0.7 -1.6 hypothetical protein compare
A4249_RS13045 -0.7 -5.7 glycosyltransferase family 1 protein compare
A4249_RS09275 -0.7 -3.2 DUF3035 domain-containing protein compare
A4249_RS16790 -0.7 -2.3 hypothetical protein compare
A4249_RS13030 -0.7 -4.5 glycosyltransferase family 1 protein compare
A4249_RS10430 -0.7 -4.1 S1/P1 Nuclease compare
A4249_RS12980 -0.7 -6.0 GDP-mannose 4,6-dehydratase compare
A4249_RS17075 -0.6 -0.8 energy transducer TonB compare
A4249_RS04085 -0.6 -1.8 ribonuclease E/G compare
A4249_RS04080 -0.6 -2.5 M48 family metalloprotease compare
A4249_RS05485 -0.6 -1.4 uracil-DNA glycosylase compare
A4249_RS12260 -0.6 -1.5 3-hydroxybutyryl-CoA dehydrogenase compare
A4249_RS08855 -0.6 -1.8 L,D-transpeptidase family protein compare
A4249_RS13175 -0.6 -1.3 Rrf2 family transcriptional regulator compare
A4249_RS14895 -0.6 -1.2 phosphonate ABC transporter, permease protein PhnE compare
A4249_RS15110 -0.6 -1.9 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS00305 -0.6 -1.7 DUF4908 domain-containing protein compare
A4249_RS13070 -0.6 -4.3 phosphomannomutase/phosphoglucomutase compare
A4249_RS12455 -0.6 -1.8 hypothetical protein compare
A4249_RS05845 -0.5 -1.5 sigma-70 family RNA polymerase sigma factor compare
A4249_RS04635 -0.5 -4.7 cyclic nucleotide-binding domain-containing protein compare
A4249_RS03440 -0.5 -2.1 hypothetical protein compare
A4249_RS10710 -0.5 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
A4249_RS13760 -0.5 -1.1 YggS family pyridoxal phosphate-dependent enzyme compare
A4249_RS03225 -0.5 -2.3 hypothetical protein compare
A4249_RS16135 -0.5 -2.1 glycoside hydrolase family 3 N-terminal domain-containing protein compare
A4249_RS08550 -0.5 -1.4 flagellar basal-body protein FlbY compare
A4249_RS13560 -0.5 -1.7 glutaredoxin 3 compare
A4249_RS11430 -0.5 -1.2 cell division protein compare
A4249_RS01090 -0.5 -1.3 sigma-70 family RNA polymerase sigma factor compare
A4249_RS08510 -0.5 -1.4 hypothetical protein compare
A4249_RS02485 -0.5 -2.7 methylmalonyl-CoA mutase family protein compare
A4249_RS10460 -0.5 -4.2 ATP-binding protein compare
A4249_RS15865 -0.5 -1.0 Holliday junction branch migration DNA helicase RuvB compare
A4249_RS09265 -0.5 -1.1 exodeoxyribonuclease VII large subunit compare
A4249_RS02650 -0.5 -0.9 hypothetical protein compare
A4249_RS00860 -0.5 -1.5 hypothetical protein compare
A4249_RS07995 -0.5 -0.8 type II 3-dehydroquinate dehydratase compare
A4249_RS11675 -0.4 -1.7 hypothetical protein compare
A4249_RS08805 -0.4 -3.0 HAMP domain-containing sensor histidine kinase compare
A4249_RS05705 -0.4 -1.9 ATP-binding cassette domain-containing protein compare
A4249_RS07665 -0.4 -1.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS07195 -0.4 -1.5 hypothetical protein compare
A4249_RS12825 -0.4 -1.3 SDR family oxidoreductase compare
A4249_RS10360 -0.4 -0.7 HAMP domain-containing sensor histidine kinase compare
A4249_RS01235 -0.4 -0.6 hypothetical protein compare
A4249_RS12210 -0.4 -1.2 tyrosine recombinase XerC compare
A4249_RS10490 -0.4 -1.9 YjfK family protein compare
A4249_RS01010 -0.4 -2.7 capsular polysaccharide biosynthesis protein compare
A4249_RS04790 -0.4 -1.7 sulfurtransferase TusA family protein compare
A4249_RS00240 -0.4 -1.5 rhodanese family protein compare
A4249_RS03570 -0.4 -1.5 TonB family protein compare
A4249_RS09350 -0.4 -1.2 PGPGW domain-containing protein compare
A4249_RS12150 -0.4 -2.4 PTS sugar transporter subunit IIA compare
A4249_RS07200 -0.4 -2.1 hypothetical protein compare
A4249_RS12970 -0.4 -1.4 glycosyltransferase family 61 protein compare
A4249_RS14680 -0.4 -1.2 PAS domain-containing sensor histidine kinase compare
A4249_RS08705 -0.4 -2.1 response regulator compare
A4249_RS06985 -0.4 -0.9 hypothetical protein compare
A4249_RS08730 -0.4 -2.8 hypothetical protein compare
A4249_RS04215 -0.4 -1.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS10110 -0.4 -1.2 DUF805 domain-containing protein compare
A4249_RS11755 -0.4 -2.0 efflux RND transporter periplasmic adaptor subunit compare
A4249_RS11185 -0.4 -1.7 exopolysaccharide biosynthesis protein compare
A4249_RS06435 -0.4 -1.0 tRNA-Asp compare
A4249_RS15180 -0.4 -2.2 hypothetical protein compare
A4249_RS16615 -0.4 -1.5 hypothetical protein compare
A4249_RS07910 -0.4 -0.9 2-hydroxyacid dehydrogenase compare
A4249_RS08495 -0.4 -0.4 Na+/H+ antiporter subunit E compare
A4249_RS13745 -0.4 -2.3 DUF3576 domain-containing protein compare
A4249_RS12640 -0.4 -0.8 hypothetical protein compare
A4249_RS10735 -0.3 -1.5 phosphogluconate dehydratase compare
A4249_RS06785 -0.3 -1.3 endolytic transglycosylase MltG compare
A4249_RS14610 -0.3 -2.8 glycosyltransferase family 39 protein compare
A4249_RS14695 -0.3 -1.2 transcription elongation factor GreA compare
A4249_RS08535 -0.3 -0.8 flagellar assembly protein FliX compare
A4249_RS09075 -0.3 -0.7 hypothetical protein compare
A4249_RS14360 -0.3 -1.3 pilus assembly protein compare
A4249_RS02675 -0.3 -1.6 N-acetyltransferase compare
A4249_RS00685 -0.3 -1.8 hypothetical protein compare
A4249_RS09880 -0.3 -3.1 TonB-dependent receptor compare
A4249_RS10105 -0.3 -0.5 DUF2460 domain-containing protein compare
A4249_RS01290 -0.3 -2.1 S49 family peptidase compare
A4249_RS16940 -0.3 -1.5 GIY-YIG nuclease family protein compare
A4249_RS02300 -0.3 -1.5 rhomboid family intramembrane serine protease compare
A4249_RS08725 -0.3 -1.4 hypothetical protein compare
A4249_RS14230 -0.3 -1.6 hypothetical protein compare
A4249_RS08500 -0.3 -1.2 K+/H+ antiporter subunit F compare
A4249_RS14780 -0.3 -2.2 NepR family anti-sigma factor compare
A4249_RS01610 -0.3 -0.6 TetR/AcrR family transcriptional regulator compare
A4249_RS01765 -0.3 -1.6 DUF3489 domain-containing protein compare
A4249_RS12390 -0.3 -1.3 ATP-dependent protease subunit HslV compare
A4249_RS07030 -0.3 -1.1 hypothetical protein compare
A4249_RS07105 -0.3 -0.6 hypothetical protein compare
A4249_RS12085 -0.3 -0.9 DUF883 family protein compare
A4249_RS06525 -0.3 -0.5 SCP2 sterol-binding domain-containing protein compare
A4249_RS14445 -0.3 -1.0 hypothetical protein compare
A4249_RS05960 -0.3 -0.9 MerR family transcriptional regulator compare
A4249_RS07180 -0.3 -1.9 hypothetical protein compare
A4249_RS01075 -0.3 -1.0 DNA-binding domain-containing protein compare
A4249_RS13335 -0.3 -1.5 DUF2459 domain-containing protein compare
A4249_RS16485 -0.3 -0.8 hypothetical protein compare
A4249_RS09480 -0.3 -1.1 hypothetical protein compare
A4249_RS11435 -0.3 -2.9 YdcF family protein compare
A4249_RS15755 -0.3 -1.6 amino acid racemase compare
A4249_RS12855 -0.3 -1.9 serine protease compare
A4249_RS11770 -0.3 -1.0 cation transporter compare
A4249_RS11720 -0.3 -0.6 strawberry notch C-terminal domain-containing protein compare
A4249_RS16725 -0.3 -0.8 hypothetical protein compare
A4249_RS16365 -0.3 -1.6 DUF393 domain-containing protein compare
A4249_RS10115 -0.3 -0.8 phage tail tape measure protein compare
A4249_RS10185 -0.3 -1.7 hypothetical protein compare
A4249_RS02875 -0.3 -1.9 autotransporter assembly complex family protein compare
A4249_RS06180 -0.3 -1.4 transcriptional repressor LexA compare
A4249_RS15965 -0.3 -1.2 YdeI/OmpD-associated family protein compare
A4249_RS15820 -0.3 -1.1 arsenate reductase (glutaredoxin) compare
A4249_RS07145 -0.3 -0.7 hypothetical protein compare
A4249_RS14395 -0.3 -1.0 hypothetical protein compare
A4249_RS03060 -0.3 -0.6 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS14905 -0.3 -0.6 phosphonate ABC transporter ATP-binding protein compare
A4249_RS06085 -0.3 -2.0 peroxide stress protein YaaA compare
A4249_RS14825 -0.3 -1.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
A4249_RS09565 -0.3 -1.3 hypothetical protein compare
A4249_RS02560 -0.3 -1.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
A4249_RS00225 -0.3 -1.3 TetR family transcriptional regulator compare
A4249_RS01145 -0.3 -1.8 OsmC family protein compare
A4249_RS09285 -0.3 -1.2 Tat pathway signal sequence domain protein compare
A4249_RS08355 -0.3 -1.8 response regulator compare
A4249_RS05055 -0.3 -1.7 hypothetical protein compare
A4249_RS16515 -0.3 -1.0 hypothetical protein compare
A4249_RS10840 -0.3 -1.6 hypothetical protein compare
A4249_RS12045 -0.3 -1.6 TadE/TadG family type IV pilus assembly protein compare
A4249_RS05900 -0.3 -0.7 hypothetical protein compare
A4249_RS03590 -0.3 -2.3 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS01215 -0.3 -0.8 hypothetical protein compare
A4249_RS02565 -0.3 -2.1 cytochrome b N-terminal domain-containing protein compare
A4249_RS02905 -0.3 -0.6 tRNA guanosine(34) transglycosylase Tgt compare
A4249_RS13700 -0.3 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
A4249_RS00720 -0.2 -0.8 DUF1294 domain-containing protein compare
A4249_RS04350 -0.2 -0.9 lipopolysaccharide biosynthesis protein compare
A4249_RS07140 -0.2 -1.9 hypothetical protein compare
A4249_RS16430 -0.2 -1.5 hypothetical protein compare
A4249_RS14985 -0.2 -1.1 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS14965 -0.2 -1.5 MarR family transcriptional regulator compare
A4249_RS01285 -0.2 -1.0 head decoration protein compare
A4249_RS14225 -0.2 -1.5 hypothetical protein compare
A4249_RS11900 -0.2 -2.1 hypothetical protein compare
A4249_RS07850 -0.2 -1.3 pseudouridine synthase compare
A4249_RS15055 -0.2 -0.8 SprT family zinc-dependent metalloprotease compare
A4249_RS15980 -0.2 -0.6 multidrug efflux SMR transporter compare
A4249_RS00830 -0.2 -1.4 hypothetical protein compare
A4249_RS07205 -0.2 -1.7 hypothetical protein compare
A4249_RS03370 -0.2 -0.4 copper-binding protein compare
A4249_RS08570 -0.2 -1.4 group III truncated hemoglobin compare
A4249_RS15580 -0.2 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
A4249_RS00660 -0.2 -1.9 cell wall hydrolase compare
A4249_RS04125 -0.2 -0.6 mechanosensitive ion channel family protein compare
A4249_RS02180 -0.2 -1.6 hypothetical protein compare
A4249_RS13750 -0.2 -0.5 hypothetical protein compare
A4249_RS16165 -0.2 -1.0 homoserine O-succinyltransferase compare
A4249_RS12000 -0.2 -1.5 type II secretion system F family protein compare
A4249_RS13010 -0.2 -1.2 FkbM family methyltransferase compare
A4249_RS10540 -0.2 -0.9 DEAD/DEAH box helicase compare
A4249_RS01000 -0.2 -1.0 DoxX family protein compare
A4249_RS01265 -0.2 -1.2 hypothetical protein compare
A4249_RS02735 -0.2 -0.9 flagellin compare
A4249_RS14795 -0.2 -1.4 acyl dehydratase compare
A4249_RS08960 -0.2 -1.6 hypothetical protein compare
A4249_RS08720 -0.2 -0.8 PaaI family thioesterase compare
A4249_RS07165 -0.2 -1.9 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS04685 -0.2 -1.6 VTT domain-containing protein compare
A4249_RS07135 -0.2 -1.2 hypothetical protein compare
A4249_RS10630 -0.2 -1.3 FAD:protein FMN transferase compare
A4249_RS00360 -0.2 -1.0 type II toxin-antitoxin system prevent-host-death family antitoxin compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Thymine across organisms