Experiment set2S25 for Brevundimonas sp. GW460-12-10-14-LB2

Compare to:

Thymine 0.793 mM carbon source

200 most important genes:

  gene name fitness t score description  
A4249_RS01460 -2.0 -2.4 signal peptide peptidase SppA compare
A4249_RS06230 -2.0 -3.2 OmpH family outer membrane protein compare
A4249_RS13805 -1.8 -1.4 HAD family hydrolase compare
A4249_RS02645 -1.5 -2.2 cobalamin biosynthesis protein CbiG compare
A4249_RS10360 -1.3 -2.4 HAMP domain-containing sensor histidine kinase compare
A4249_RS13060 -1.1 -9.0 AGE family epimerase/isomerase compare
A4249_RS11150 -1.1 -5.8 capsular biosynthesis protein compare
A4249_RS11125 -1.1 -9.6 glycosyltransferase family 9 protein compare
A4249_RS12970 -1.1 -4.0 glycosyltransferase family 61 protein compare
A4249_RS12980 -1.1 -9.9 GDP-mannose 4,6-dehydratase compare
A4249_RS00895 -1.1 -2.1 DUF1476 domain-containing protein compare
A4249_RS13025 -1.1 -8.3 hypothetical protein compare
A4249_RS12305 -1.0 -3.5 glycosyltransferase family 1 protein compare
A4249_RS13070 -1.0 -7.6 phosphomannomutase/phosphoglucomutase compare
A4249_RS13030 -1.0 -7.0 glycosyltransferase family 1 protein compare
A4249_RS13035 -1.0 -5.7 hypothetical protein compare
A4249_RS05620 -1.0 -5.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
A4249_RS13045 -1.0 -8.0 glycosyltransferase family 1 protein compare
A4249_RS08855 -1.0 -2.7 L,D-transpeptidase family protein compare
A4249_RS04080 -0.9 -3.4 M48 family metalloprotease compare
A4249_RS10430 -0.9 -5.1 S1/P1 Nuclease compare
A4249_RS13020 -0.9 -4.9 NAD-dependent epimerase/dehydratase family protein compare
A4249_RS07995 -0.8 -1.7 type II 3-dehydroquinate dehydratase compare
A4249_RS07610 -0.8 -1.3 methyltransferase type 11 compare
A4249_RS08300 -0.8 -1.5 cold-shock protein compare
A4249_RS03060 -0.8 -1.9 metalloregulator ArsR/SmtB family transcription factor compare
A4249_RS05625 -0.8 -6.5 ADP-glyceromanno-heptose 6-epimerase compare
A4249_RS04215 -0.8 -2.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
A4249_RS08500 -0.7 -2.6 K+/H+ antiporter subunit F compare
A4249_RS09350 -0.7 -2.2 PGPGW domain-containing protein compare
A4249_RS10460 -0.7 -6.6 ATP-binding protein compare
A4249_RS06665 -0.7 -1.5 endonuclease/exonuclease/phosphatase family protein compare
A4249_RS09265 -0.7 -1.3 exodeoxyribonuclease VII large subunit compare
A4249_RS11825 -0.7 -1.3 DUF6521 family protein compare
A4249_RS00050 -0.7 -1.3 type 1 glutamine amidotransferase compare
A4249_RS05485 -0.7 -1.5 uracil-DNA glycosylase compare
A4249_RS10815 -0.7 -2.1 Do family serine endopeptidase compare
A4249_RS01010 -0.7 -4.2 capsular polysaccharide biosynthesis protein compare
A4249_RS16585 -0.7 -1.5 hypothetical protein compare
A4249_RS01285 -0.7 -3.0 head decoration protein compare
A4249_RS08705 -0.7 -3.8 response regulator compare
A4249_RS00720 -0.7 -1.7 DUF1294 domain-containing protein compare
A4249_RS08805 -0.6 -4.6 HAMP domain-containing sensor histidine kinase compare
A4249_RS11720 -0.6 -1.2 strawberry notch C-terminal domain-containing protein compare
A4249_RS00215 -0.6 -2.7 bifunctional diguanylate cyclase/phosphodiesterase compare
A4249_RS13125 -0.6 -2.1 ribonuclease PH compare
A4249_RS01415 -0.6 -1.4 phage Gp37/Gp68 family protein compare
A4249_RS09405 -0.6 -1.4 beta-N-acetylhexosaminidase compare
A4249_RS00170 -0.6 -0.9 TetR/AcrR family transcriptional regulator compare
A4249_RS16455 -0.6 -0.7 helix-turn-helix transcriptional regulator compare
A4249_RS09275 -0.6 -3.0 DUF3035 domain-containing protein compare
A4249_RS08730 -0.6 -4.5 hypothetical protein compare
A4249_RS01905 -0.6 -1.2 TrbC/VirB2 family protein compare
A4249_RS15110 -0.6 -1.8 YbaB/EbfC family nucleoid-associated protein compare
A4249_RS08825 -0.6 -2.9 tryptophan-rich sensory protein compare
A4249_RS09880 -0.5 -5.1 TonB-dependent receptor compare
A4249_RS08285 -0.5 -1.4 preQ(1) synthase compare
A4249_RS06435 -0.5 -1.4 tRNA-Asp compare
A4249_RS04635 -0.5 -4.7 cyclic nucleotide-binding domain-containing protein compare
A4249_RS14445 -0.5 -1.1 hypothetical protein compare
A4249_RS10390 -0.5 -1.1 translation elongation factor 4 compare
A4249_RS07050 -0.5 -1.0 hypothetical protein compare
A4249_RS16460 -0.5 -1.6 hypothetical protein compare
A4249_RS07665 -0.5 -1.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
A4249_RS00815 -0.5 -2.6 tyrosine-protein phosphatase compare
A4249_RS05960 -0.5 -1.0 MerR family transcriptional regulator compare
A4249_RS16565 -0.5 -1.4 hypothetical protein compare
A4249_RS08865 -0.5 -1.1 DUF1192 domain-containing protein compare
A4249_RS09255 -0.5 -0.4 phosphoribosylamine--glycine ligase compare
A4249_RS02780 -0.4 -2.0 DMT family transporter compare
A4249_RS12085 -0.4 -1.2 DUF883 family protein compare
A4249_RS09455 -0.4 -2.6 methyl-accepting chemotaxis protein compare
A4249_RS14905 -0.4 -1.2 phosphonate ABC transporter ATP-binding protein compare
A4249_RS04510 -0.4 -2.1 polymer-forming cytoskeletal protein compare
A4249_RS13450 -0.4 -1.6 PilZ domain-containing protein compare
A4249_RS01275 -0.4 -1.5 hypothetical protein compare
A4249_RS08535 -0.4 -1.0 flagellar assembly protein FliX compare
A4249_RS15360 -0.4 -1.1 DNA replication/repair protein RecF compare
A4249_RS13545 -0.4 -1.3 Flp family type IVb pilin compare
A4249_RS08725 -0.4 -1.6 hypothetical protein compare
A4249_RS10500 -0.4 -1.0 PspA/IM30 family protein compare
A4249_RS04490 -0.4 -1.1 cobaltochelatase subunit CobS compare
A4249_RS14835 -0.4 -2.3 S41 family peptidase compare
A4249_RS07505 -0.4 -1.8 hypothetical protein compare
A4249_RS09515 -0.4 -1.3 hypothetical protein compare
A4249_RS08405 -0.4 -2.0 TIGR01841 family phasin compare
A4249_RS01135 -0.4 -2.0 DsbA family protein compare
A4249_RS14840 -0.4 -1.8 carboxynorspermidine decarboxylase compare
A4249_RS13850 -0.4 -1.4 twin transmembrane helix small protein compare
A4249_RS12665 -0.4 -2.3 HIT family protein compare
A4249_RS08355 -0.4 -3.1 response regulator compare
A4249_RS04345 -0.4 -1.5 glycosyltransferase family A protein compare
A4249_RS02865 -0.4 -0.9 arsenate reductase family protein compare
A4249_RS13560 -0.4 -0.9 glutaredoxin 3 compare
A4249_RS03680 -0.4 -1.1 DUF6249 domain-containing protein compare
A4249_RS16725 -0.4 -0.9 hypothetical protein compare
A4249_RS11435 -0.4 -3.5 YdcF family protein compare
A4249_RS03590 -0.4 -3.2 enoyl-CoA hydratase/isomerase family protein compare
A4249_RS11505 -0.4 -2.0 TlpA disulfide reductase family protein compare
A4249_RS08290 -0.4 -2.5 nitronate monooxygenase family protein compare
A4249_RS15595 -0.4 -1.5 hypothetical protein compare
A4249_RS07185 -0.3 -1.9 hypothetical protein compare
A4249_RS09940 -0.3 -2.1 sugar MFS transporter compare
A4249_RS00950 -0.3 -1.9 tetratricopeptide repeat protein compare
A4249_RS00015 -0.3 -1.9 CsbD family protein compare
A4249_RS12210 -0.3 -0.9 tyrosine recombinase XerC compare
A4249_RS15845 -0.3 -2.2 hemerythrin domain-containing protein compare
A4249_RS10480 -0.3 -0.8 DUF1190 domain-containing protein compare
A4249_RS11730 -0.3 -1.9 DUF305 domain-containing protein compare
A4249_RS07320 -0.3 -1.0 hypothetical protein compare
A4249_RS07165 -0.3 -2.9 WcbI family polysaccharide biosynthesis putative acetyltransferase compare
A4249_RS16485 -0.3 -0.8 hypothetical protein compare
A4249_RS09620 -0.3 -1.3 flagellar basal-body rod protein FlgF compare
A4249_RS03820 -0.3 -0.9 DUF1489 domain-containing protein compare
A4249_RS06895 -0.3 -1.4 hypothetical protein compare
A4249_RS07205 -0.3 -2.1 hypothetical protein compare
A4249_RS05885 -0.3 -1.8 cold-shock protein compare
A4249_RS01545 -0.3 -2.1 thioredoxin domain-containing protein compare
A4249_RS06550 -0.3 -1.0 chorismate mutase compare
A4249_RS09285 -0.3 -1.4 Tat pathway signal sequence domain protein compare
A4249_RS11010 -0.3 -2.6 ATP-dependent chaperone ClpB compare
A4249_RS05160 -0.3 -1.5 response regulator compare
A4249_RS10735 -0.3 -1.3 phosphogluconate dehydratase compare
A4249_RS01675 -0.3 -1.2 DMT family transporter compare
A4249_RS13615 -0.3 -0.9 Rrf2 family transcriptional regulator compare
A4249_RS13195 -0.3 -1.4 alpha-ketoacid dehydrogenase subunit beta compare
A4249_RS02325 -0.3 -0.5 23S ribosomal RNA compare
A4249_RS03645 -0.3 -1.7 TonB-dependent receptor compare
A4249_RS14875 -0.3 -1.2 benzoate/H(+) symporter BenE family transporter compare
A4249_RS11380 -0.3 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
A4249_RS15625 -0.3 -2.1 response regulator compare
A4249_RS09535 -0.3 -1.6 FecR domain-containing protein compare
A4249_RS16570 -0.3 -1.5 hypothetical protein compare
A4249_RS08250 -0.3 -2.3 DUF3126 family protein compare
A4249_RS10965 -0.3 -0.5 response regulator compare
A4249_RS08520 -0.3 -1.3 hypothetical protein compare
A4249_RS11180 -0.3 -1.0 YqaA family protein compare
A4249_RS12215 -0.3 -1.4 hypothetical protein compare
A4249_RS14985 -0.3 -1.4 DHA2 family efflux MFS transporter permease subunit compare
A4249_RS09645 -0.3 -0.8 hypothetical protein compare
A4249_RS07170 -0.3 -1.8 hypothetical protein compare
A4249_RS04475 -0.3 -0.7 response regulator transcription factor compare
A4249_RS10135 -0.3 -0.9 phage head-tail adapter protein compare
A4249_RS08870 -0.3 -1.7 NAD(P)H-quinone oxidoreductase compare
A4249_RS11985 -0.3 -1.2 hypothetical protein compare
A4249_RS11930 -0.3 -1.0 YcxB family protein compare
A4249_RS07915 -0.3 -1.7 EF-hand domain-containing protein compare
A4249_RS07150 -0.3 -2.4 hypothetical protein compare
A4249_RS13010 -0.3 -1.7 FkbM family methyltransferase compare
A4249_RS14780 -0.3 -1.9 NepR family anti-sigma factor compare
A4249_RS12455 -0.3 -0.7 hypothetical protein compare
A4249_RS17075 -0.3 -0.5 energy transducer TonB compare
A4249_RS11640 -0.3 -1.5 hypothetical protein compare
A4249_RS07900 -0.3 -1.3 Do family serine endopeptidase compare
A4249_RS07195 -0.3 -1.0 hypothetical protein compare
A4249_RS15505 -0.3 -1.6 DUF3617 family protein compare
A4249_RS06925 -0.3 -2.0 hypothetical protein compare
A4249_RS09415 -0.3 -1.3 deoxyguanosinetriphosphate triphosphohydrolase compare
A4249_RS15265 -0.3 -1.7 hypothetical protein compare
A4249_RS07190 -0.3 -1.3 hypothetical protein compare
A4249_RS10915 -0.3 -0.9 hypothetical protein compare
A4249_RS03520 -0.3 -1.3 antibiotic biosynthesis monooxygenase compare
A4249_RS15180 -0.3 -1.8 hypothetical protein compare
A4249_RS12755 -0.3 -0.9 hydrogen peroxide-inducible genes activator compare
A4249_RS05155 -0.3 -1.4 CHASE3 domain-containing protein compare
A4249_RS05370 -0.3 -1.3 DNA polymerase Y family protein compare
A4249_RS16605 -0.3 -1.6 hypothetical protein compare
A4249_RS07180 -0.3 -1.7 hypothetical protein compare
A4249_RS00100 -0.3 -0.6 PadR family transcriptional regulator compare
A4249_RS13250 -0.3 -1.4 MaoC family dehydratase compare
A4249_RS16545 -0.3 -0.9 hypothetical protein compare
A4249_RS13970 -0.3 -1.3 amidohydrolase family protein compare
A4249_RS04845 -0.3 -1.3 HAD-IA family hydrolase compare
A4249_RS14900 -0.3 -1.6 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
A4249_RS06180 -0.3 -1.2 transcriptional repressor LexA compare
A4249_RS07485 -0.3 -1.4 hypothetical protein compare
A4249_RS11590 -0.2 -1.4 sulfite exporter TauE/SafE family protein compare
A4249_RS11285 -0.2 -0.9 double-strand break repair protein AddB compare
A4249_RS11770 -0.2 -0.7 cation transporter compare
A4249_RS09355 -0.2 -1.7 hypothetical protein compare
A4249_RS16770 -0.2 -1.4 hypothetical protein compare
A4249_RS14690 -0.2 -1.7 TIGR03862 family flavoprotein compare
A4249_RS12445 -0.2 -1.8 radical SAM family heme chaperone HemW compare
A4249_RS14610 -0.2 -2.1 glycosyltransferase family 39 protein compare
A4249_RS01325 -0.2 -0.7 hypothetical protein compare
A4249_RS12170 -0.2 -1.6 hypothetical protein compare
A4249_RS01235 -0.2 -0.6 hypothetical protein compare
A4249_RS12295 -0.2 -0.6 trehalose-phosphatase compare
A4249_RS04125 -0.2 -0.7 mechanosensitive ion channel family protein compare
A4249_RS01340 -0.2 -1.4 phosphoadenosine phosphosulfate reductase family protein compare
A4249_RS02085 -0.2 -1.9 pectate lyase compare
A4249_RS09930 -0.2 -1.9 efflux RND transporter periplasmic adaptor subunit compare
A4249_RS00045 -0.2 -1.4 hypothetical protein compare
A4249_RS03325 -0.2 -1.4 hypothetical protein compare
A4249_RS08495 -0.2 -0.4 Na+/H+ antiporter subunit E compare
A4249_RS10070 -0.2 -1.7 response regulator compare
A4249_RS03150 -0.2 -1.5 cation transporter compare
A4249_RS07480 -0.2 -1.6 hypothetical protein compare
A4249_RS03480 -0.2 -1.6 SRPBCC family protein compare
A4249_RS02060 -0.2 -1.1 SDR family oxidoreductase compare


Specific Phenotypes

None in this experiment

For Brevundimonas sp. GW460-12-10-14-LB2 in carbon source experiments

For carbon source Thymine across organisms