Experiment set2S228 for Escherichia coli ECRC98

Compare to:

WM_JK32

200 most important genes:

  gene name fitness t score description  
JDDGAC_19300 rfaJ -8.1 -5.6 glucosyltransferase compare
JDDGAC_28510 -7.8 -10.8 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_19310 rfaL -7.6 -5.3 O-antigen ligase RfaL compare
JDDGAC_28575 perB -7.5 -4.9 GDP-perosamine N-acetyltransferase compare
JDDGAC_19305 rfaB -7.5 -5.2 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_17890 rfaH -7.4 -3.9 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_19290 waaO -6.6 -7.2 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_28540 rfbE -6.6 -3.0 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_18205 wecA -6.4 -14.9 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_28525 wzy -6.4 -3.2 O157 family O-antigen polymerase compare
JDDGAC_19280 rfaG -6.1 -8.3 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_25435 guaB -5.9 -4.1 IMP dehydrogenase compare
JDDGAC_22885 yggS -5.9 -11.9 pyridoxal phosphate homeostasis protein compare
JDDGAC_10355 acrZ -5.8 -1.6 multidrug efflux pump accessory protein AcrZ compare
JDDGAC_18185 rffG -5.8 -15.1 dTDP-glucose 4,6-dehydratase compare
JDDGAC_25755 purM -5.5 -10.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
JDDGAC_28590 wzzB -5.3 -14.3 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_28520 wcaA -5.2 -2.0 glycosyl transferase compare
JDDGAC_16935 purH -5.0 -15.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
JDDGAC_11485 purE -5.0 -5.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
JDDGAC_19285 rfaP -4.9 -5.8 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_26675 purF -4.7 -12.1 amidophosphoribosyltransferase compare
JDDGAC_21580 lptC -4.7 -2.2 LPS export ABC transporter periplasmic protein LptC compare
JDDGAC_25135 purL -4.6 -17.7 phosphoribosylformylglycinamidine synthase compare
JDDGAC_25875 purC -4.6 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
JDDGAC_17735 glnG -4.4 -2.6 nitrogen regulation protein NR(I) compare
JDDGAC_25750 purN -4.3 -8.6 phosphoribosylglycinamide formyltransferase compare
JDDGAC_15870 purA -4.2 -4.1 adenylosuccinate synthase compare
JDDGAC_16940 purD -4.2 -6.6 Phosphoribosylamine--glycine ligase compare
JDDGAC_14440 apaH -3.8 -2.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_11490 purK -3.7 -6.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
JDDGAC_25440 guaA -3.6 -2.5 glutamine-hydrolyzing GMP synthase compare
JDDGAC_23100 serA -3.6 -10.7 phosphoglycerate dehydrogenase compare
JDDGAC_09100 serC -3.6 -9.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
JDDGAC_18180 rfbA -3.4 -5.9 glucose-1-phosphate thymidylyltransferase RfbA compare
JDDGAC_19320 rfaF -3.4 -2.7 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_21455 sspA -3.3 -8.2 stringent starvation protein A compare
JDDGAC_05985 galU -3.3 -3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_09385 lrp -3.3 -6.7 leucine-responsive transcriptional regulator Lrp compare
JDDGAC_10815 nagA -2.9 -4.7 N-acetylglucosamine-6-phosphate deacetylase compare
JDDGAC_26670 cvpA -2.9 -5.3 colicin V production protein compare
JDDGAC_10465 tolA -2.9 -3.0 cell envelope integrity protein TolA compare
JDDGAC_25690 -2.8 -1.7 acyltransferase compare
JDDGAC_18175 rffC -2.8 -5.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
JDDGAC_15900 miaA -2.7 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_13120 -2.7 -1.7 DUF2635 domain-containing protein compare
JDDGAC_14795 serB -2.7 -3.1 phosphoserine phosphatase compare
JDDGAC_13940 dksA -2.7 -6.5 RNA polymerase-binding protein DksA compare
JDDGAC_17715 typA -2.6 -10.6 ribosome-dependent GTPase TypA compare
JDDGAC_20740 aroK -2.4 -2.7 shikimate kinase AroK compare
JDDGAC_27740 -2.4 -1.8 regulator compare
JDDGAC_11470 cysS -2.3 -1.3 cysteine--tRNA ligase compare
JDDGAC_23570 yqeH -2.2 -2.0 Uncharacterized protein YqeH compare
JDDGAC_25045 rseA -2.2 -4.3 anti-sigma-E factor RseA compare
JDDGAC_28560 wbdQ -2.0 -1.1 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_18170 rffA -1.9 -4.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
JDDGAC_13640 gmhB -1.9 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
JDDGAC_18785 -1.9 -1.7 hypothetical protein compare
JDDGAC_24035 cysJ -1.8 -10.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
JDDGAC_08145 dgcT -1.7 -2.1 putative diguanylate cyclase DgcT compare
JDDGAC_24115 cysC -1.7 -7.3 Adenylyl-sulfate kinase compare
JDDGAC_06700 -1.7 -2.2 DUF4222 domain-containing protein compare
JDDGAC_16800 pgi -1.7 -6.3 glucose-6-phosphate isomerase compare
JDDGAC_18405 mnmG -1.7 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_15675 cysQ -1.7 -5.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
JDDGAC_24040 cysI -1.7 -5.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
JDDGAC_24045 cysH -1.6 -6.5 phosphoadenosine phosphosulfate reductase compare
JDDGAC_10470 tolR -1.6 -2.6 colicin uptake protein TolR compare
JDDGAC_09540 -1.6 -1.1 hypothetical protein compare
JDDGAC_00825 nudB -1.6 -1.3 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_10455 pal -1.6 -1.7 peptidoglycan-associated lipoprotein Pal compare
JDDGAC_11240 fepG -1.5 -3.2 iron-enterobactin ABC transporter permease compare
JDDGAC_08665 -1.5 -1.9 Hok/gef family compare
JDDGAC_02315 asr -1.5 -1.2 acid resistance repetitive basic protein Asr compare
JDDGAC_06890 -1.5 -1.1 HNH endonuclease compare
JDDGAC_03805 ddpX -1.4 -1.8 D-alanyl-D-alanine dipeptidase compare
JDDGAC_10460 tolB -1.4 -3.4 Tol-Pal system protein TolB compare
JDDGAC_26635 -1.4 -5.7 Protein DedA compare
JDDGAC_09435 cspD -1.4 -2.0 cold shock-like protein CspD compare
JDDGAC_20780 frlD -1.4 -1.5 fructoselysine 6-kinase compare
JDDGAC_23645 ygdR -1.4 -1.9 lipoprotein YgdR compare
JDDGAC_14270 rsmH -1.4 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_14420 surA -1.4 -2.1 peptidylprolyl isomerase SurA compare
JDDGAC_10810 nagB -1.3 -3.7 glucosamine-6-phosphate deaminase compare
JDDGAC_28515 galF -1.3 -2.6 UTP--glucose-1-phosphate uridylyltransferase GalF compare
JDDGAC_11975 -1.3 -1.9 Lon protease compare
JDDGAC_14075 acnB -1.3 -2.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
JDDGAC_11035 lipB -1.3 -0.8 lipoyl(octanoyl) transferase LipB compare
JDDGAC_09815 mntS -1.3 -0.9 manganase accumulation protein MntS compare
JDDGAC_19185 rpoZ -1.3 -0.9 DNA-directed RNA polymerase subunit omega compare
JDDGAC_14710 thrL -1.2 -2.8 thr operon leader peptide compare
JDDGAC_21765 pnp -1.2 -3.5 polyribonucleotide nucleotidyltransferase compare
JDDGAC_04725 ynaL -1.2 -1.1 Protein YnaL compare
JDDGAC_29975 sopA -1.2 -2.8 plasmid-partitioning protein SopA compare
JDDGAC_28670 yeeD -1.2 -1.2 Putative sulfur carrier protein YeeD compare
JDDGAC_25525 -1.2 -1.9 hypothetical protein compare
JDDGAC_12265 proC -1.2 -2.1 pyrroline-5-carboxylate reductase compare
JDDGAC_11985 clpX -1.2 -2.0 ATP-dependent protease ATP-binding subunit ClpX compare
JDDGAC_11450 fimA -1.1 -1.4 type 1 fimbrial major subunit FimA compare
JDDGAC_15620 chpB -1.1 -2.6 type II toxin-antitoxin system ChpB family toxin compare
JDDGAC_13035 -1.1 -1.1 tRNA-Xxx compare
JDDGAC_26945 arnD -1.1 -1.9 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase compare
JDDGAC_04365 -1.1 -1.1 Putative phage tail component compare
JDDGAC_24675 -1.1 -1.0 hypothetical protein compare
JDDGAC_07825 -1.1 -0.8 Membrane protein compare
JDDGAC_23440 sctT -1.1 -1.5 type III secretion system export apparatus subunit SctT compare
JDDGAC_05255 -1.1 -1.1 hypothetical protein compare
JDDGAC_22025 tdcR -1.1 -2.1 transcriptional activator TdcR compare
JDDGAC_23140 ygfB -1.1 -1.5 UPF0149 family protein YgfB compare
JDDGAC_24540 ygaP -1.1 -1.1 thiosulfate sulfurtransferase YgaP compare
JDDGAC_18395 asnC -1.1 -6.7 transcriptional regulator AsnC compare
JDDGAC_06055 narX -1.1 -2.8 nitrate/nitrite two-component system sensor histidine kinase NarX compare
JDDGAC_05215 trpB -1.0 -4.0 tryptophan synthase subunit beta compare
JDDGAC_01040 prc -1.0 -4.3 carboxy terminal-processing peptidase compare
JDDGAC_26350 yfdY -1.0 -1.9 Uncharacterized protein YfdY compare
JDDGAC_27410 psuK -1.0 -0.9 pseudouridine kinase compare
JDDGAC_17730 glnL -1.0 -1.6 nitrogen regulation protein NR(II) compare
JDDGAC_19110 -1.0 -1.2 toxin compare
JDDGAC_22605 exbD -1.0 -2.7 TonB system transport protein ExbD compare
JDDGAC_12460 lacI -1.0 -2.3 DNA-binding transcriptional repressor LacI compare
JDDGAC_06145 prs -1.0 -2.0 ribose-phosphate diphosphokinase compare
JDDGAC_06675 -1.0 -1.2 hypothetical protein compare
JDDGAC_18890 ler -1.0 -1.5 transcription regulator Ler compare
JDDGAC_20930 yheO -1.0 -1.4 Uncharacterized protein YheO compare
JDDGAC_23195 sdhE -1.0 -1.5 FAD assembly factor SdhE compare
JDDGAC_06575 emrE -1.0 -2.0 multidrug efflux SMR transporter EmrE compare
JDDGAC_18760 tisB -1.0 -0.7 Small toxic protein TisB compare
JDDGAC_11805 recR -1.0 -1.2 recombination mediator RecR compare
JDDGAC_06690 -1.0 -2.7 hypothetical protein compare
JDDGAC_02120 rsxE -0.9 -1.9 electron transport complex subunit RsxE compare
JDDGAC_27785 rusA -0.9 -0.7 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_04635 -0.9 -2.3 Putative bacterial toxin ydaT compare
JDDGAC_30180 repA2 -0.9 -2.7 Replication regulatory protein repA2 compare
JDDGAC_00945 -0.9 -2.0 hypothetical protein compare
JDDGAC_28800 -0.9 -1.3 XRE family transcriptional regulator compare
JDDGAC_06025 narJ -0.9 -0.8 nitrate reductase molybdenum cofactor assembly chaperone compare
JDDGAC_20810 cysG -0.9 -4.1 siroheme synthase CysG compare
JDDGAC_27065 yfaE -0.9 -0.8 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_06760 -0.9 -1.2 Mutator family transposase compare
JDDGAC_01275 cdgI -0.9 -2.4 putative diguanylate cyclase CdgI compare
JDDGAC_04200 -0.9 -2.3 hypothetical protein compare
JDDGAC_24995 trxC -0.9 -1.6 thioredoxin TrxC compare
JDDGAC_28060 zorO -0.9 -0.8 Small toxic protein ZorO compare
JDDGAC_03880 yddG -0.9 -1.0 aromatic amino acid efflux DMT transporter YddG compare
JDDGAC_03665 lsrD -0.9 -2.6 autoinducer 2 ABC transporter permease LsrD compare
JDDGAC_14705 thrA -0.9 -6.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
JDDGAC_20745 aroB -0.8 -3.2 3-dehydroquinate synthase compare
JDDGAC_08130 cadC1 -0.8 -0.7 transcriptional regulator compare
JDDGAC_02375 ynfC -0.8 -1.3 YnfC family lipoprotein compare
JDDGAC_11290 hokE -0.8 -1.8 type I toxin-antitoxin system toxin HokE compare
JDDGAC_04195 ydcF -0.8 -1.3 Protein YdcF compare
JDDGAC_20915 slyD -0.8 -4.1 peptidylprolyl isomerase compare
JDDGAC_05080 yciT -0.8 -1.7 DNA-binding transcriptional regulator YciT compare
JDDGAC_02140 rsxB -0.8 -1.5 electron transport complex subunit RsxB compare
JDDGAC_00110 espJ -0.8 -1.1 type III secretion system effector ADP-ribosyltransferase EspJ compare
JDDGAC_09300 -0.8 -2.1 Replication gene B protein compare
JDDGAC_29995 -0.8 -1.5 hypothetical protein compare
JDDGAC_04630 ydaU -0.8 -1.3 Uncharacterized protein YdaU compare
JDDGAC_06620 mnmA -0.8 -1.5 tRNA 2-thiouridine(34) synthase MnmA compare
JDDGAC_11990 clpP -0.8 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
JDDGAC_28450 wcaF -0.8 -1.4 colanic acid biosynthesis acetyltransferase WcaF compare
JDDGAC_18020 corA -0.8 -1.1 magnesium/cobalt transporter CorA compare
JDDGAC_13050 -0.8 -1.0 phage tail protein compare
JDDGAC_19275 rfaQ -0.8 -2.8 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_00520 -0.8 -2.0 Phage protein compare
JDDGAC_14280 cra -0.8 -2.1 catabolite repressor/activator compare
JDDGAC_00285 fliI -0.8 -2.1 flagellum-specific ATP synthase FliI compare
JDDGAC_23460 -0.8 -1.0 Type III secretion protein EprH compare
JDDGAC_05990 rssB -0.8 -3.2 two-component system response regulator RssB compare
JDDGAC_23480 -0.8 -1.5 type III secretion apparatus protein OrgA/MxiK compare
JDDGAC_27790 ylcG -0.8 -1.0 Uncharacterized protein YlcG compare
JDDGAC_06290 ycgJ -0.8 -2.1 Uncharacterized protein YcgJ compare
JDDGAC_26340 ypdK -0.8 -0.7 membrane protein YpdK compare
JDDGAC_27385 yeiW -0.8 -2.3 UPF0153 protein YeiW compare
JDDGAC_16385 ytcA -0.8 -0.8 Uncharacterized protein YtcA compare
JDDGAC_00950 yebE -0.8 -1.4 Inner membrane protein YebE compare
JDDGAC_01145 yoaC -0.8 -1.7 Uncharacterized protein YoaC compare
JDDGAC_05620 -0.8 -1.3 hypothetical protein compare
JDDGAC_10575 odhB -0.8 -1.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
JDDGAC_19635 cspA -0.8 -0.9 Major cold shock protein compare
JDDGAC_27425 yeiL -0.7 -0.7 Regulatory protein YeiL compare
JDDGAC_26820 nuoE -0.7 -0.8 NADH-quinone oxidoreductase subunit NuoE compare
JDDGAC_09625 ybjM -0.7 -1.9 Inner membrane protein YbjM compare
JDDGAC_16555 tyrB -0.7 -4.2 aromatic amino acid transaminase compare
JDDGAC_21505 gltD -0.7 -4.1 glutamate synthase subunit GltD compare
JDDGAC_07460 mdoG -0.7 -2.6 glucans biosynthesis protein MdoG compare
JDDGAC_12945 -0.7 -2.2 Clp protease ClpB compare
JDDGAC_22020 yhaB -0.7 -1.4 Uncharacterized protein YhaB compare
JDDGAC_04130 ydcH -0.7 -1.0 Uncharacterized protein YdcH compare
JDDGAC_10285 -0.7 -0.7 Cell division protein ZapA compare
JDDGAC_18160 rffT -0.7 -3.1 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
JDDGAC_11235 fepD -0.7 -1.3 ferrienterobactin ABC transporter permease compare
JDDGAC_01060 yobH -0.7 -1.8 Uncharacterized protein YobH compare
JDDGAC_10605 sdhC -0.7 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
JDDGAC_06230 fadR -0.7 -1.3 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_30055 yubL -0.7 -1.1 UPF0401 protein YubL compare
JDDGAC_27880 -0.7 -1.1 Phage protein compare
JDDGAC_10390 gpmA -0.7 -3.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
JDDGAC_07410 yceO -0.7 -0.9 Uncharacterized protein YceO compare
JDDGAC_24250 hycD -0.7 -2.7 formate hydrogenlyase subunit HycD compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC98 in phage experiments

For phage Phage across organisms